© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3350.t1 |
| Gene name | |
| Location | scaffold_05:421966..423683 |
| Strand | + |
| Gene length (bp) | 1717 |
| Transcript length (bp) | 1437 |
| Coding sequence length (bp) | 1437 |
| Protein length (aa) | 479 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00344 | SecY | SecY | 5.5E-72 | 76 | 457 |
| PF10559 | Plug_translocon | Plug domain of Sec61p | 4.9E-16 | 42 | 75 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0015031 | protein transport | Yes |
| GO:0071702 | organic substance transport | No |
| GO:0008104 | protein localization | No |
| GO:0045184 | establishment of protein localization | No |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051641 | cellular localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0033036 | macromolecule localization | No |
| GO:0051234 | establishment of localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0070727 | cellular macromolecule localization | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 33 | 55 | 22 |
| 2 | 75 | 97 | 22 |
| 3 | 118 | 140 | 22 |
| 4 | 145 | 167 | 22 |
| 5 | 174 | 195 | 21 |
| 6 | 241 | 263 | 22 |
| 7 | 283 | 305 | 22 |
| 8 | 354 | 376 | 22 |
| 9 | 416 | 435 | 19 |
| 10 | 440 | 462 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 95.68 | 58.76 | 132.60 |
| 5d_25C | Five days - 25 degrees Celsius | 62.12 | 37.20 | 87.04 |
| 7d_25C | Seven days - 25 degrees Celsius | 55.78 | 33.28 | 78.29 |
| 10d_25C | Ten days - 25 degrees Celsius | 62.15 | 37.59 | 86.71 |
| 7d_15C | Seven days - 15 degrees Celsius | 64.86 | 37.64 | 92.08 |
| 7d_30C | Seven days - 30 degrees Celsius | 96.04 | 55.47 | 136.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.037164 | yes |
| 3d_25C | 7d_25C | 0.009124 | yes |
| 3d_25C | 7d_15C | 0.073778 | no |
| 3d_25C | 7d_30C | 0.990852 | no |
| 3d_25C | 10d_25C | 0.036724 | yes |
| 5d_25C | 7d_25C | 0.718525 | no |
| 5d_25C | 7d_15C | 0.900503 | no |
| 5d_25C | 7d_30C | 0.043971 | yes |
| 5d_25C | 10d_25C | 0.998695 | no |
| 7d_25C | 7d_15C | 0.587058 | no |
| 7d_25C | 7d_30C | 0.008133 | yes |
| 7d_25C | 10d_25C | 0.708494 | no |
| 7d_15C | 7d_30C | 0.082307 | no |
| 7d_15C | 10d_25C | 0.904032 | no |
| 7d_30C | 10d_25C | 0.042422 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3350.t1 MSGLRFLDLIKPFTPLLPEVAAPETKVPFNQKLMWTGLTLMIFLVMSQMPLYGIVSSDTSDPLYWLRMMLASNRG TLMELGITPIISSGMVFQLLAGTHLIDVNLDLKTDRELYQTAQKLFAIILSFGQACVYVLTGLYGQPSDLGAGIC VLLIVQLVVAGLVVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGPEFEGAIIALFHLLLTW PDKQRALYEAFYRQNLPNVMNLLATLLVFAAVIYLQGFRVEIPVKSSRQRGMRGSYPVRLFYTSNMPIMLQSALC SNIFLISQMLYSRFSENILVQLLGVWEPREGSAQLYAASGIAYYMSPPLNFKEALLDPIHTAVYITFMLVACALF SKTWIEVSGSAPRDVAKQLKDQGLVMSGHREQSMYKELKRVIPTAAAFGGACIGGLSVASDLMGALGSGTGILLA VTIIYGYFEIAAREGDIGAGLKGLVPGS* |
| Coding | >Pro_DTO377G3_2|g3350.t1 ATGAGCGGCCTACGCTTCCTTGACTTGATCAAGCCCTTTACGCCCCTCCTCCCGGAGGTGGCAGCTCCTGAGACT AAGGTGCCCTTCAACCAGAAGTTGATGTGGACTGGTTTGACTTTGATGATCTTCTTGGTCATGAGTCAGATGCCT CTTTACGGCATTGTCTCCTCCGATACTTCGGACCCCCTGTACTGGCTCCGTATGATGCTGGCCAGTAACCGGGGT ACTCTGATGGAGCTGGGTATCACCCCTATTATCTCCTCCGGCATGGTCTTCCAGCTCCTTGCCGGTACCCACCTC ATTGATGTCAACCTCGACTTGAAGACCGACCGCGAGCTCTACCAGACCGCCCAGAAGCTCTTCGCTATCATTCTC TCCTTCGGCCAGGCCTGTGTTTACGTTCTGACTGGTCTATACGGCCAGCCCAGTGATCTCGGTGCCGGTATCTGT GTTCTCCTGATTGTCCAGCTGGTTGTCGCTGGTCTTGTTGTTATTCTGCTTGACGAGCTTCTCCAGAAGGGCTAC GGTCTGGGCAGCGGTATCTCCCTGTTCATTGCCACCAACATTTGCGAGTCGATTGTCTGGAAGGCCTTCTCCCCC ACGACCATCAATACCGGCCGTGGCCCCGAGTTCGAGGGTGCTATTATTGCTCTGTTCCACCTTCTTCTGACCTGG CCCGATAAGCAGCGCGCCCTGTACGAGGCGTTCTACCGCCAGAACCTGCCCAACGTCATGAACCTCCTGGCTACT CTCCTCGTCTTCGCCGCTGTCATCTACCTGCAGGGTTTCCGTGTTGAGATCCCCGTCAAGTCTTCCCGCCAGCGT GGCATGCGCGGCTCATACCCCGTCCGCCTCTTCTACACCTCCAACATGCCCATCATGCTCCAGTCCGCTCTGTGC TCCAACATCTTCCTTATCAGTCAGATGCTGTACTCGCGCTTCTCGGAGAACATCCTGGTCCAGCTTCTCGGAGTT TGGGAGCCCCGTGAGGGATCTGCTCAGCTTTACGCCGCCTCGGGTATTGCTTACTACATGTCGCCTCCTCTCAAC TTCAAGGAGGCTCTCCTCGACCCCATCCACACTGCCGTCTACATCACCTTCATGCTTGTGGCTTGCGCCCTCTTC TCCAAGACTTGGATTGAGGTTTCCGGCTCCGCTCCCCGTGACGTTGCCAAGCAGCTCAAGGACCAGGGTCTCGTC ATGTCTGGTCACCGCGAGCAGAGTATGTACAAGGAGCTGAAGCGCGTTATCCCTACTGCCGCTGCATTCGGTGGT GCCTGCATTGGTGGTCTTTCCGTCGCCTCGGACCTCATGGGTGCTCTCGGCAGCGGTACTGGTATTCTTCTTGCC GTCACCATCATCTACGGCTACTTCGAAATTGCCGCCCGTGAGGGTGACATTGGCGCTGGCCTCAAGGGCCTCGTC CCCGGCAGCTAA |
| Transcript | >Pro_DTO377G3_2|g3350.t1 ATGAGCGGCCTACGCTTCCTTGACTTGATCAAGCCCTTTACGCCCCTCCTCCCGGAGGTGGCAGCTCCTGAGACT AAGGTGCCCTTCAACCAGAAGTTGATGTGGACTGGTTTGACTTTGATGATCTTCTTGGTCATGAGTCAGATGCCT CTTTACGGCATTGTCTCCTCCGATACTTCGGACCCCCTGTACTGGCTCCGTATGATGCTGGCCAGTAACCGGGGT ACTCTGATGGAGCTGGGTATCACCCCTATTATCTCCTCCGGCATGGTCTTCCAGCTCCTTGCCGGTACCCACCTC ATTGATGTCAACCTCGACTTGAAGACCGACCGCGAGCTCTACCAGACCGCCCAGAAGCTCTTCGCTATCATTCTC TCCTTCGGCCAGGCCTGTGTTTACGTTCTGACTGGTCTATACGGCCAGCCCAGTGATCTCGGTGCCGGTATCTGT GTTCTCCTGATTGTCCAGCTGGTTGTCGCTGGTCTTGTTGTTATTCTGCTTGACGAGCTTCTCCAGAAGGGCTAC GGTCTGGGCAGCGGTATCTCCCTGTTCATTGCCACCAACATTTGCGAGTCGATTGTCTGGAAGGCCTTCTCCCCC ACGACCATCAATACCGGCCGTGGCCCCGAGTTCGAGGGTGCTATTATTGCTCTGTTCCACCTTCTTCTGACCTGG CCCGATAAGCAGCGCGCCCTGTACGAGGCGTTCTACCGCCAGAACCTGCCCAACGTCATGAACCTCCTGGCTACT CTCCTCGTCTTCGCCGCTGTCATCTACCTGCAGGGTTTCCGTGTTGAGATCCCCGTCAAGTCTTCCCGCCAGCGT GGCATGCGCGGCTCATACCCCGTCCGCCTCTTCTACACCTCCAACATGCCCATCATGCTCCAGTCCGCTCTGTGC TCCAACATCTTCCTTATCAGTCAGATGCTGTACTCGCGCTTCTCGGAGAACATCCTGGTCCAGCTTCTCGGAGTT TGGGAGCCCCGTGAGGGATCTGCTCAGCTTTACGCCGCCTCGGGTATTGCTTACTACATGTCGCCTCCTCTCAAC TTCAAGGAGGCTCTCCTCGACCCCATCCACACTGCCGTCTACATCACCTTCATGCTTGTGGCTTGCGCCCTCTTC TCCAAGACTTGGATTGAGGTTTCCGGCTCCGCTCCCCGTGACGTTGCCAAGCAGCTCAAGGACCAGGGTCTCGTC ATGTCTGGTCACCGCGAGCAGAGTATGTACAAGGAGCTGAAGCGCGTTATCCCTACTGCCGCTGCATTCGGTGGT GCCTGCATTGGTGGTCTTTCCGTCGCCTCGGACCTCATGGGTGCTCTCGGCAGCGGTACTGGTATTCTTCTTGCC GTCACCATCATCTACGGCTACTTCGAAATTGCCGCCCGTGAGGGTGACATTGGCGCTGGCCTCAAGGGCCTCGTC CCCGGCAGCTAA |
| Gene | >Pro_DTO377G3_2|g3350.t1 ATGAGCGGCCGTGAGTCCCCCGAAACCTCGTCGCGCAATCCCGACAATCCGTCTCGAATCGCCCTCAATTGAAGG CCAAATGCTGATGGAGGAATATAGTACGCTTCCTTGACTTGATCAAGCCCTTTACGCCCCTCCTCCCGGAGGTGG CAGCTCCTGAGACTAAGGTGCCCTTCAACCAGAAGTTGATGTGGACTGGTGTATGTCGCCCTGAATCCGCCCTCT CCGCGCGAAATCGACTTGGATCCTAATGAATTACGTTATAGTTGACTTTGATGATCTTCTTGGTCATGAGTCAGA TGCCTCTTTACGGCATTGTCTCCTCCGATACTTCGGACCCCCTGTACTGGCTCCGTATGATGCTGGCCAGTAACC GGGGTACTCTGATGGAGCTGGGTATCACCCCTATTATCTCCTCCGGCATGGTCTTCCAGGTATGCGATTCCAAAA AACTCATATGTTATTCTTCGCGGTGATTGTACTGACATATTTTGTGCCCCAGCTCCTTGCCGGTACCCACCTCAT TGATGTCAACCTCGACTTGAAGACCGACCGCGAGCTCTACCAGACCGCCCAGAAGCTCTTCGCTATCATTCTCTC CTTCGGCCAGGCCTGTGTTTACGTTCTGACTGGTCTATACGGCCAGCCCAGTGATCTCGGTGCCGGTATCTGTGT TCTCCTGATTGTCCAGCTGGTTGTCGCTGGTCTTGTTGTTATTCTGCTTGACGAGCTTCTCCAGAAGGGCTACGG TCTGGGCAGCGGTATCTCCCTGTTCATTGCCACCAACATTTGCGAGTCGATTGTCTGGAAGGCCTTCTCCCCCAC GACCATCAATACCGGCCGTGGCCCCGAGTTCGAGGGTGCTATTATTGCTCTGTTCCACCTTCTTCTGACCTGGCC CGATAAGCAGCGCGCCCTGTACGAGGCGTTCTACCGCCAGAACCTGCCCAACGTCATGAACCTCCTGGCTACTCT CCTCGTCTTCGCCGCTGTCATCTACCTGCAGGGTTTCCGTGTTGAGATCCCCGTCAAGTCTTCCCGCCAGCGTGG CATGCGCGGCTCATACCCCGTCCGCCTCTTCTACACCTCCAACATGCCCATCATGCTCCAGTCCGCTCTGTGCTC CAACATCTTCCTTATCAGTCAGATGCTGTACTCGCGCTTCTCGGAGAACATCCTGGTCCAGCTTCTCGGAGTTTG GGAGCCCCGTGAGGGATCTGCTCAGCTTTACGCCGCCTCGGGTATTGCTTACTACATGTCGCCTCCTCTCAACTT CAAGGAGGCTCTCCTCGACCCCATCCACACTGCCGTCTACATCACCTTCATGCTTGTGGCTTGCGCCCTCTTCTC CAAGACTTGGATTGAGGTTTCCGGCTCCGCTCCCCGTGACGTTGCCAAGCAGCTCAAGGACCAGGGTCTCGTCAT GTCTGGTCACCGCGAGCAGAGTATGTACAAGGAGCTGAAGCGCGTTATCCCTACTGCCGCTGCATTCGGTGGTGC CTGCATTGGTGGTCTTTCCGTCGCCTCGGACCTCATGGGTGCTCTCGGCAGCGGTACTGGTATTCTTCTTGCCGT CACGTAAGTTCCTTCGTTGATACATCAATTGTGTTCATTTCAGCTAACAGCTCAATACAGCATCATCTACGGCTA CTTCGAAATTGCCGCCCGTGAGGGTGACATTGGCGCTGGCCTCAAGGGCCTCGTCCCCGGCAGCTAA |