© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3339.t1 |
| Gene name | |
| Location | scaffold_05:391867..393080 |
| Strand | + |
| Gene length (bp) | 1213 |
| Transcript length (bp) | 678 |
| Coding sequence length (bp) | 678 |
| Protein length (aa) | 226 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 7.8E-18 | 76 | 199 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 92.92 | 53.35 | 132.49 |
| 5d_25C | Five days - 25 degrees Celsius | 111.50 | 65.39 | 157.60 |
| 7d_25C | Seven days - 25 degrees Celsius | 90.36 | 51.72 | 129.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 103.08 | 59.73 | 146.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 124.58 | 73.72 | 175.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 101.11 | 58.09 | 144.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.501823 | no |
| 3d_25C | 7d_25C | 0.941446 | no |
| 3d_25C | 7d_15C | 0.235613 | no |
| 3d_25C | 7d_30C | 0.794959 | no |
| 3d_25C | 10d_25C | 0.736715 | no |
| 5d_25C | 7d_25C | 0.429367 | no |
| 5d_25C | 7d_15C | 0.710824 | no |
| 5d_25C | 7d_30C | 0.754706 | no |
| 5d_25C | 10d_25C | 0.804399 | no |
| 7d_25C | 7d_15C | 0.177500 | no |
| 7d_25C | 7d_30C | 0.714412 | no |
| 7d_25C | 10d_25C | 0.651196 | no |
| 7d_15C | 7d_30C | 0.422158 | no |
| 7d_15C | 10d_25C | 0.472904 | no |
| 7d_30C | 10d_25C | 0.957585 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3339.t1 MSARVQAKSKLISRGPLDPSEARWARMVKTTYTDPLGVERTWESAERTKRGLALVGLPSRLPGPQQTRPDGIDLD GVGIVAILNKDSGSELLLQKQYRPPIDAVVIEVPAGLIDAGETPEQCAVRELKEETGYVGVAEQTSPVMFNDPGL CNTNLHMVHVRVDMSLPENKNPKPELEDNEFIECFTIPLTSLFDELKKLEKEGYAIDARIGTLAEGIELAKKWKL * |
| Coding | >Pro_DTO377G3_2|g3339.t1 ATGTCAGCTCGCGTACAGGCCAAGTCGAAACTCATTTCGCGGGGACCATTGGACCCCAGCGAAGCCCGCTGGGCT CGAATGGTGAAGACAACATACACCGACCCCCTGGGTGTCGAGCGAACATGGGAATCAGCTGAGCGCACGAAACGG GGACTAGCATTAGTGGGGCTCCCCAGTCGACTCCCGGGACCTCAACAGACTCGTCCTGACGGGATTGATCTTGAT GGCGTTGGGATCGTCGCTATTTTGAACAAGGATTCTGGCTCGGAGCTGCTTCTGCAGAAGCAATACCGCCCTCCC ATTGATGCTGTTGTCATTGAGGTTCCTGCGGGGCTTATCGATGCGGGCGAGACGCCTGAGCAATGTGCTGTTCGA GAACTTAAGGAGGAGACTGGTTATGTTGGCGTCGCGGAGCAGACTAGTCCGGTTATGTTTAACGACCCAGGGCTT TGCAATACCAACCTGCATATGGTCCACGTCCGGGTTGATATGTCTCTTCCCGAGAACAAGAACCCGAAGCCTGAG CTCGAGGATAACGAGTTCATTGAATGCTTTACTATTCCTTTGACATCGTTGTTCGACGAGTTAAAGAAGCTTGAA AAAGAGGGTTATGCCATTGATGCCAGGATCGGAACCCTAGCCGAGGGCATTGAACTCGCAAAGAAATGGAAGTTG TGA |
| Transcript | >Pro_DTO377G3_2|g3339.t1 ATGTCAGCTCGCGTACAGGCCAAGTCGAAACTCATTTCGCGGGGACCATTGGACCCCAGCGAAGCCCGCTGGGCT CGAATGGTGAAGACAACATACACCGACCCCCTGGGTGTCGAGCGAACATGGGAATCAGCTGAGCGCACGAAACGG GGACTAGCATTAGTGGGGCTCCCCAGTCGACTCCCGGGACCTCAACAGACTCGTCCTGACGGGATTGATCTTGAT GGCGTTGGGATCGTCGCTATTTTGAACAAGGATTCTGGCTCGGAGCTGCTTCTGCAGAAGCAATACCGCCCTCCC ATTGATGCTGTTGTCATTGAGGTTCCTGCGGGGCTTATCGATGCGGGCGAGACGCCTGAGCAATGTGCTGTTCGA GAACTTAAGGAGGAGACTGGTTATGTTGGCGTCGCGGAGCAGACTAGTCCGGTTATGTTTAACGACCCAGGGCTT TGCAATACCAACCTGCATATGGTCCACGTCCGGGTTGATATGTCTCTTCCCGAGAACAAGAACCCGAAGCCTGAG CTCGAGGATAACGAGTTCATTGAATGCTTTACTATTCCTTTGACATCGTTGTTCGACGAGTTAAAGAAGCTTGAA AAAGAGGGTTATGCCATTGATGCCAGGATCGGAACCCTAGCCGAGGGCATTGAACTCGCAAAGAAATGGAAGTTG TGA |
| Gene | >Pro_DTO377G3_2|g3339.t1 ATGTCAGCTCGCGTACAGGCCAAGTCGAAACTCATTTCGCGGGGACCATTGGTACGTTTTTCTAATCTCCCTTGG GTCTCTTCAGCGAATCCCAAGTCCATTATATAGACAGAGCGCGGAGGATATCACCAAAAAAGCGCCAATGCACGA CTGACACGTCTCACCAAACAGGACCCCAGCGAAGCCCGCTGGGCTCGAATGGTGAAGACAACATACACCGACCCC CTGGGTGTCGAGCGAACATGGGAATCAGCTGAGCGCACGGTAAGACCTATCCCTTGTTCTGTGCTTATTGTATTA TGCGCGCTGTTGGTAGATGTCTGGGGTATATGTATGTATCGCACCTATCGCAGGTATCCACCTGTCTGCATGACT GTCACGAAAGCCAAGCTACCCAACTAAGATCCGGCCTCATCTAAATCTAGAAACGGGGACTAGCATTAGTGGGGC TCCCCAGTCGACTCCCGGGACCTCAACAGGTGGCATAAACCCGGGCGTTGCCTGGCGCTGTATCAACTAAAACCA CATGACCGGTTGCCTTGCGATGTGTATCGGACCCATTGGTCACCATCTAACTCAAAAATCTATCAGAGCCTCCGT TTGAAATTAGACTTCGGATTTGATGCTAACCGCGTTTTCCTAGACTCGTCCTGACGGGATTGATCTTGATGGCGT TGGGATCGTCGCTATTTTGAACAAGGATTCTGGCTCGGAGCTGCTTCTGCAGAAGCAATACCGCCCTCCCATTGA TGCTGTTGTCATTGAGGTTCCTGCGGGGCTTATCGATGCGGGCGAGACGCCTGAGCAATGTGCTGTTCGAGAACT TAAGGAGGAGACTGGTTATGTTGGCGTCGCGGAGCAGACTAGTCCGGTTATGTTTAACGGTACGTGAGATTGCTA TGGGATTTGTTTTGTTCTCGCGGGTTATTTTACTTCTTGTAAAGCTAAAGCTGACAAACATATGTGGTTATCAGA CCCAGGGCTTTGCAATACCAACCTGCATATGGTCCACGTCCGGGTTGATATGTCTCTTCCCGAGAACAAGAACCC GAAGCCTGAGCTCGAGGATAACGAGTTCATTGAATGCTTTACTATTCCTTTGACATCGTTGTTCGACGAGTTAAA GAAGCTTGAAAAAGAGGGTTATGCCATTGATGCCAGGATCGGAACCCTAGCCGAGGGCATTGAACTCGCAAAGAA ATGGAAGTTGTGA |