Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3332.t1
Gene name
Locationscaffold_05:374593..376108
Strand-
Gene length (bp)1515
Transcript length (bp)999
Coding sequence length (bp)999
Protein length (aa) 333

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-16 103 172
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 2.2E-05 243 296

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 46 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 112.65 68.53 156.77
5d_25C Five days - 25 degrees Celsius 151.06 92.79 209.33
7d_25C Seven days - 25 degrees Celsius 159.37 97.89 220.85
10d_25C Ten days - 25 degrees Celsius 229.49 139.84 319.13
7d_15C Seven days - 15 degrees Celsius 121.90 74.04 169.76
7d_30C Seven days - 30 degrees Celsius 152.30 93.44 211.16

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.192251 no
3d_25C 7d_25C 0.104750 no
3d_25C 7d_15C 0.793488 no
3d_25C 7d_30C 0.179558 no
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.860655 no
5d_25C 7d_15C 0.377602 no
5d_25C 7d_30C 0.981936 no
5d_25C 10d_25C 0.043019 yes
7d_25C 7d_15C 0.238276 no
7d_25C 7d_30C 0.884924 no
7d_25C 10d_25C 0.080462 no
7d_15C 7d_30C 0.352836 no
7d_15C 10d_25C 0.001804 yes
7d_30C 10d_25C 0.048822 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3332.t1
MDRSLDEIIAEDTRNPGRTSGGGGGSRRHNNSGRRHERDGVRKVRPPFPPLRILSLLRDNHRVDLNLDWVHDKFD
DDRSRPSRGGRRGRDGHDSDRPSSLTKVRVDNLHYDITESDLEDLFGRIGPVSELTVSYDRAGRSEGVAFVTYAR
LKDAHLSIQEYDGANAKGQPIRLSLVPGRRERNPLESAQRPRSSLLDRVERPRDDRSMSPEDSDRRRRGGRAHRS
DVTKPAPDNIDRYVPGQRSSQRSPNRRGGGRRGGGRDNRSQQTEGSNRRSNARPRKTQEELDQEMEDYWGSANNG
GGEAAAPAQDAPQQTAPAPSAPAADDDIDMIE*
Coding >Pro_DTO377G3_2|g3332.t1
ATGGACCGCAGCTTGGACGAAATCATCGCTGAAGACACGCGGAACCCTGGTCGTACTTCAGGCGGTGGTGGTGGT
TCTCGTCGTCACAATAACTCCGGCCGTCGTCACGAGCGCGATGGCGTCAGAAAGGTCCGCCCTCCTTTTCCTCCT
CTGCGAATTCTCTCCTTGCTCCGTGACAATCACCGTGTCGATCTTAACCTAGACTGGGTGCACGACAAATTCGAC
GACGACCGATCCCGCCCGTCCCGTGGAGGCCGCAGAGGCCGCGACGGACATGATTCCGATCGCCCTAGCTCACTG
ACCAAGGTTCGCGTGGATAATCTCCACTACGACATTACTGAAAGCGATCTTGAAGATCTCTTCGGCCGAATTGGA
CCCGTCTCTGAACTTACTGTCTCTTACGACCGCGCTGGACGCTCCGAGGGAGTTGCTTTCGTCACATATGCCCGC
CTGAAGGATGCACACCTCTCCATTCAGGAGTACGACGGAGCCAACGCTAAGGGCCAGCCCATTCGTCTTTCTCTC
GTCCCCGGCCGCCGTGAACGTAACCCCCTCGAGTCCGCACAGCGCCCTAGGTCCAGCCTTTTGGACCGCGTAGAG
CGCCCCCGCGACGACCGTAGCATGAGCCCCGAGGACAGCGACCGACGCCGCCGTGGCGGTCGTGCTCATCGCAGC
GACGTCACTAAGCCCGCCCCAGACAACATCGACCGTTACGTTCCCGGGCAACGCTCCAGCCAGCGCTCTCCCAAC
CGCCGCGGCGGAGGCAGACGTGGTGGTGGCCGCGACAACCGTTCCCAACAGACTGAAGGATCCAACCGCCGATCC
AATGCCCGTCCGCGCAAGACTCAGGAGGAGTTGGACCAGGAGATGGAAGATTACTGGGGTAGTGCCAACAACGGC
GGTGGTGAAGCTGCTGCACCCGCTCAGGACGCCCCTCAGCAGACTGCTCCGGCCCCTAGCGCACCCGCTGCCGAC
GATGATATCGATATGATTGAGTAA
Transcript >Pro_DTO377G3_2|g3332.t1
ATGGACCGCAGCTTGGACGAAATCATCGCTGAAGACACGCGGAACCCTGGTCGTACTTCAGGCGGTGGTGGTGGT
TCTCGTCGTCACAATAACTCCGGCCGTCGTCACGAGCGCGATGGCGTCAGAAAGGTCCGCCCTCCTTTTCCTCCT
CTGCGAATTCTCTCCTTGCTCCGTGACAATCACCGTGTCGATCTTAACCTAGACTGGGTGCACGACAAATTCGAC
GACGACCGATCCCGCCCGTCCCGTGGAGGCCGCAGAGGCCGCGACGGACATGATTCCGATCGCCCTAGCTCACTG
ACCAAGGTTCGCGTGGATAATCTCCACTACGACATTACTGAAAGCGATCTTGAAGATCTCTTCGGCCGAATTGGA
CCCGTCTCTGAACTTACTGTCTCTTACGACCGCGCTGGACGCTCCGAGGGAGTTGCTTTCGTCACATATGCCCGC
CTGAAGGATGCACACCTCTCCATTCAGGAGTACGACGGAGCCAACGCTAAGGGCCAGCCCATTCGTCTTTCTCTC
GTCCCCGGCCGCCGTGAACGTAACCCCCTCGAGTCCGCACAGCGCCCTAGGTCCAGCCTTTTGGACCGCGTAGAG
CGCCCCCGCGACGACCGTAGCATGAGCCCCGAGGACAGCGACCGACGCCGCCGTGGCGGTCGTGCTCATCGCAGC
GACGTCACTAAGCCCGCCCCAGACAACATCGACCGTTACGTTCCCGGGCAACGCTCCAGCCAGCGCTCTCCCAAC
CGCCGCGGCGGAGGCAGACGTGGTGGTGGCCGCGACAACCGTTCCCAACAGACTGAAGGATCCAACCGCCGATCC
AATGCCCGTCCGCGCAAGACTCAGGAGGAGTTGGACCAGGAGATGGAAGATTACTGGGGTAGTGCCAACAACGGC
GGTGGTGAAGCTGCTGCACCCGCTCAGGACGCCCCTCAGCAGACTGCTCCGGCCCCTAGCGCACCCGCTGCCGAC
GATGATATCGATATGATTGAGTAA
Gene >Pro_DTO377G3_2|g3332.t1
ATGGACCGCAGCTTGGACGAAATCATCGCTGAAGACACGGTAAGGCTCCAGCGACTAATGAAACCACCAAAACGT
GCAACTTACTCATTCAATTGCAGCGGAACCCTGGTCGTACTTCAGGCGGTGGTGGTGGTTCTCGTCGTCACAATA
ACTCCGGCCGTCGTCACGAGCGCGATGGCGTCAGAAAGGTACAGCTTGACTAGAAACCGAGGCTTTCTTCTGGAG
TCCCATTTGCATAGCATCGAAGCTAACATCACACTCGGTGTCCAGGTCCGCCCTCCTTTTCCTCCTCTGCGAATT
CTCTCCTTGCTCCGTGACAATCGTAGCCAGTCCCCTGGATCGTTGGAGACTCGCCAACGACCACGCCACGGCAAA
GACATGGAAAAGAACTTTGCACGATATCTCATCTGACTTGGAGCTAACGCTAAGTTCCTTCGATAATAACAGCCA
TACACTTCAGACCGTGTCGATCTTAACCTGTGATTATACCTCCTATCTACTACGGTGTGGGTGATACTGACGGGT
TTCTGGTTATAGAGACTGGGTGCACGACAAATTCGACGACGACCGATGTATGTGGCTTTCCCGTACTTTGCTGGG
ACCTATCTAACAGCATTCCTCTCCAGCCCGCCCGTCCCGTGGAGGCCGCAGAGGCCGCGACGGACATGATTCCGA
TCGGTAGGCGCCTCCTTCAGCCTTAAATTTTAAGCTTGTCTGACAGCGCTAATTGAATTCTTAGCCCTAGCTCAC
TGACCAAGGTTCGCGTGGATAATCTCCACTACGACATTACTGAAAGCGATCTTGAAGTACGTTTCAATCATACTC
AAACCATCACAGAATAACACCCTAACAAACCCCCTCGCTGAACAGGATCTCTTCGGCCGAATTGGACCCGTCTCT
GAACTTACTGTCTCTTACGACCGCGCTGGACGCTCCGAGGGAGTTGCTTTCGTCACATATGCCCGCCTGAAGGAT
GCACACCTCTCCATTCAGGAGTACGACGGAGCCAACGCTAAGGGCCAGCCCATTCGTCTTTCTCTCGTCCCCGGC
CGCCGTGAACGTAACCCCCTCGAGTCCGCACAGCGCCCTAGGTCCAGCCTTTTGGACCGCGTAGAGCGCCCCCGC
GACGACCGTAGCATGAGCCCCGAGGACAGCGACCGACGCCGCCGTGGCGGTCGTGCTCATCGCAGCGACGTCACT
AAGCCCGCCCCAGACAACATCGACCGTTACGTTCCCGGGCAACGCTCCAGCCAGCGCTCTCCCAACCGCCGCGGC
GGAGGCAGACGTGGTGGTGGCCGCGACAACCGTTCCCAACAGACTGAAGGATCCAACCGCCGATCCAATGCCCGT
CCGCGCAAGACTCAGGAGGAGTTGGACCAGGAGATGGAAGATTACTGGGGTAGTGCCAACAACGGCGGTGGTGAA
GCTGCTGCACCCGCTCAGGACGCCCCTCAGCAGACTGCTCCGGCCCCTAGCGCACCCGCTGCCGACGATGATATC
GATATGATTGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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