© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g3328.t1 |
| Gene name | |
| Location | scaffold_05:363125..364069 |
| Strand | + |
| Gene length (bp) | 944 |
| Transcript length (bp) | 714 |
| Coding sequence length (bp) | 714 |
| Protein length (aa) | 238 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03853 | YjeF_N | YjeF-related protein N-terminus | 7.7E-35 | 27 | 190 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1690.29 | 922.57 | 2458.01 |
| 5d_25C | Five days - 25 degrees Celsius | 2036.74 | 1093.34 | 2980.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 1650.97 | 879.84 | 2422.10 |
| 10d_25C | Ten days - 25 degrees Celsius | 2061.21 | 1101.61 | 3020.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 2301.98 | 1157.86 | 3446.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 1536.94 | 816.08 | 2257.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.542135 | no |
| 3d_25C | 7d_25C | 0.954338 | no |
| 3d_25C | 7d_15C | 0.266604 | no |
| 3d_25C | 7d_30C | 0.785036 | no |
| 3d_25C | 10d_25C | 0.505578 | no |
| 5d_25C | 7d_25C | 0.482707 | no |
| 5d_25C | 7d_15C | 0.724314 | no |
| 5d_25C | 7d_30C | 0.306777 | no |
| 5d_25C | 10d_25C | 0.977728 | no |
| 7d_25C | 7d_15C | 0.222685 | no |
| 7d_25C | 7d_30C | 0.842113 | no |
| 7d_25C | 10d_25C | 0.448036 | no |
| 7d_15C | 7d_30C | 0.123900 | no |
| 7d_15C | 10d_25C | 0.755441 | no |
| 7d_30C | 10d_25C | 0.282120 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3328.t1 MSLKAISAKDAASLDKDLMEVGGWSLDQLMELAGLSVAEAVWRVHPPSAGKKVLVVCGPGNNGGDGLVATRHLAQ FGYTPSLYYPKQGKKELYERLKTQLHNLSVPFVDDFEPALKTADFLVDAIFGFSFGGPLRDPFDKIVSQIESANV PVLSVDAPSSWDIQTGPPKEGPGAKFMPHALISLSAPKPCVAFYHGRHFIGGRFLTKNITDKYGLDLPKYQGVDQ VLEIGVDAEGRL* |
| Coding | >Pro_DTO377G3_2|g3328.t1 ATGTCGTTGAAGGCAATCTCAGCCAAAGATGCCGCATCACTTGACAAAGACCTCATGGAGGTCGGCGGCTGGTCT CTGGACCAGTTGATGGAGCTAGCAGGCCTCTCTGTCGCGGAAGCCGTCTGGAGGGTCCACCCCCCAAGCGCAGGC AAGAAAGTTCTAGTCGTCTGCGGACCAGGCAACAATGGCGGGGATGGTCTCGTAGCAACTCGCCACCTAGCCCAA TTCGGCTACACCCCGTCTCTGTACTACCCAAAGCAGGGCAAAAAGGAGCTTTACGAACGCCTCAAAACCCAACTG CATAACCTCTCAGTCCCCTTCGTTGACGACTTTGAACCAGCCCTGAAGACGGCAGACTTCCTGGTCGACGCCATC TTCGGCTTCTCCTTCGGCGGACCATTGCGTGATCCATTCGACAAAATCGTCTCGCAAATCGAGTCCGCCAATGTC CCGGTGCTGAGTGTCGATGCGCCCAGCTCATGGGATATCCAGACCGGACCACCGAAGGAAGGACCCGGTGCGAAG TTCATGCCGCATGCGTTGATCAGTTTGTCTGCACCTAAGCCGTGCGTGGCATTTTATCACGGCAGGCATTTTATC GGTGGTAGGTTTTTGACGAAGAACATTACTGATAAGTATGGGCTTGATTTGCCCAAGTATCAGGGCGTTGATCAG GTTTTGGAGATTGGGGTTGATGCGGAGGGCAGATTGTAA |
| Transcript | >Pro_DTO377G3_2|g3328.t1 ATGTCGTTGAAGGCAATCTCAGCCAAAGATGCCGCATCACTTGACAAAGACCTCATGGAGGTCGGCGGCTGGTCT CTGGACCAGTTGATGGAGCTAGCAGGCCTCTCTGTCGCGGAAGCCGTCTGGAGGGTCCACCCCCCAAGCGCAGGC AAGAAAGTTCTAGTCGTCTGCGGACCAGGCAACAATGGCGGGGATGGTCTCGTAGCAACTCGCCACCTAGCCCAA TTCGGCTACACCCCGTCTCTGTACTACCCAAAGCAGGGCAAAAAGGAGCTTTACGAACGCCTCAAAACCCAACTG CATAACCTCTCAGTCCCCTTCGTTGACGACTTTGAACCAGCCCTGAAGACGGCAGACTTCCTGGTCGACGCCATC TTCGGCTTCTCCTTCGGCGGACCATTGCGTGATCCATTCGACAAAATCGTCTCGCAAATCGAGTCCGCCAATGTC CCGGTGCTGAGTGTCGATGCGCCCAGCTCATGGGATATCCAGACCGGACCACCGAAGGAAGGACCCGGTGCGAAG TTCATGCCGCATGCGTTGATCAGTTTGTCTGCACCTAAGCCGTGCGTGGCATTTTATCACGGCAGGCATTTTATC GGTGGTAGGTTTTTGACGAAGAACATTACTGATAAGTATGGGCTTGATTTGCCCAAGTATCAGGGCGTTGATCAG GTTTTGGAGATTGGGGTTGATGCGGAGGGCAGATTGTAA |
| Gene | >Pro_DTO377G3_2|g3328.t1 ATGTCGTTGAAGGTATAGTTGTCTGATATTAGCTCCATCTCAAAACCTAACCATGTTCCTAGGCAATCTCAGCCA AAGATGCCGCATCACTTGACAAAGACCTCATGGAGGTCGGCGGCTGGTCTCTGGACCAGTTGATGGAGCTAGCAG GCCTCTCTGTCGCGGAAGCCGGTCAGAACCATCAATCTCGAGCATGTAGTCGGGCCATACTGATACAAGCAACTA GTCTGGAGGGTCCACCCCCCAAGCGCAGGCAAGAAAGTTCTAGTCGTCTGCGGACCAGGCAACAATGGTGAGAAG CATCTCCAACCTTGCCATTCGAGCAACAGCAACCTAACAAACCACCAGGCGGGGATGGTCTCGTAGCAACTCGCC ACCTAGCCCAATTCGGCTACACCCCGTCTCTGTACTACCCAAAGCAGGGCAAAAAGGAGCTTTACGAAGTACGCA ATCCCAAACCAGAAGGATCGTAGAAGCAAAAAAAAAAAAGAAGAAAATCTAACCCAAGCCAGCGCCTCAAAACCC AACTGCATAACCTCTCAGTCCCCTTCGTTGACGACTTTGAACCAGCCCTGAAGACGGCAGACTTCCTGGTCGACG CCATCTTCGGCTTCTCCTTCGGCGGACCATTGCGTGATCCATTCGACAAAATCGTCTCGCAAATCGAGTCCGCCA ATGTCCCGGTGCTGAGTGTCGATGCGCCCAGCTCATGGGATATCCAGACCGGACCACCGAAGGAAGGACCCGGTG CGAAGTTCATGCCGCATGCGTTGATCAGTTTGTCTGCACCTAAGCCGTGCGTGGCATTTTATCACGGCAGGCATT TTATCGGTGGTAGGTTTTTGACGAAGAACATTACTGATAAGTATGGGCTTGATTTGCCCAAGTATCAGGGCGTTG ATCAGGTTTTGGAGATTGGGGTTGATGCGGAGGGCAGATTGTAA |