Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3326.t1
Gene name
Locationscaffold_05:358647..360450
Strand-
Gene length (bp)1803
Transcript length (bp)1803
Coding sequence length (bp)1803
Protein length (aa) 601

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-14 392 455

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 165.06 99.50 230.61
5d_25C Five days - 25 degrees Celsius 191.67 114.33 269.02
7d_25C Seven days - 25 degrees Celsius 226.11 134.33 317.89
10d_25C Ten days - 25 degrees Celsius 391.28 219.82 562.73
7d_15C Seven days - 15 degrees Celsius 183.48 110.14 256.82
7d_30C Seven days - 30 degrees Celsius 192.41 114.88 269.95

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.586703 no
3d_25C 7d_25C 0.170566 no
3d_25C 7d_15C 0.710144 no
3d_25C 7d_30C 0.569208 no
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.546547 no
5d_25C 7d_15C 0.895918 no
5d_25C 7d_30C 0.992129 no
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.400600 no
7d_25C 7d_30C 0.550861 no
7d_25C 10d_25C 0.013211 yes
7d_15C 7d_30C 0.885476 no
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.001278 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3326.t1
MSGSSSQSTRTSPGSFGTTQLTESVSSGSPPQQSLPSSQVPLTAQHAMSTDVYSPNASQPPSSMNPSFSYPFSPI
GTTASFDTNMRLGDNDRNLQGLNGLNRGNGGAILMRKLPRNTSREALRSMLLFAKDFVDADFVTLDLPEDDGFLT
AIARFITLPAAEEARSLLDGKPNSKNDANMVVEMYPGPMGANLSNTRRNTIDHTATRALMGASNGPLARQSSRFN
GTFQSLERLSNANPNQAIGEGLPPTSESRMHSLFSPQSPIGNGIDNLPRITGKSMIDEDPDEETGELLKDPVGYA
ENGHSSNISAGRRATNPQIPTNRFANMSLSTNMSSPPLQNYPGGGAQRMGGGTPTSGYPNQGHGYPYNAQHTPRH
SLPAANPNDLNPPCNTLYVGNLPPDTSEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFDEVAMASKALNELYGY
KLSNSVKTGIRLSFSKNPLGVRSGQPGSMNSSNSPSGQGAVPGGSSLSGIHNNMFSAVNGPPPGLAAPPGLGMPM
PAPPMRNGTSMHNPVNPHAQMMGNTSYNPNSGLGIRNGANSMMMSPPPPPNSGGNNPTPNLNGYNSFYPDYMMGR
*
Coding >Pro_DTO377G3_2|g3326.t1
ATGAGCGGCAGCTCTAGCCAGTCCACTCGTACGAGTCCCGGCTCTTTTGGAACTACGCAGCTCACAGAGTCCGTG
TCATCCGGTTCGCCCCCACAGCAGTCACTCCCTTCTTCGCAGGTGCCTTTGACGGCTCAGCATGCGATGTCGACC
GACGTGTACAGTCCGAATGCGTCGCAACCGCCTTCATCTATGAATCCATCTTTCTCATACCCTTTCTCCCCTATC
GGTACAACAGCTTCATTCGATACCAACATGCGCTTAGGCGATAACGATCGCAACCTCCAGGGTCTAAATGGCCTG
AATCGCGGAAACGGAGGCGCCATTCTCATGCGCAAACTGCCGCGAAATACGAGCCGCGAAGCCCTGCGCAGCATG
CTTCTCTTCGCCAAAGACTTTGTCGACGCCGACTTTGTCACCTTGGACCTGCCCGAGGATGATGGGTTCTTGACT
GCGATCGCGCGATTCATTACTTTGCCAGCCGCCGAAGAGGCCAGATCACTCCTCGATGGCAAGCCGAACTCCAAA
AACGACGCCAACATGGTCGTCGAGATGTACCCCGGTCCGATGGGCGCGAATCTGTCCAACACCCGCCGTAACACC
ATCGATCACACCGCCACCCGTGCGTTAATGGGTGCCTCGAACGGTCCCCTAGCGCGTCAATCCTCGCGCTTTAAC
GGCACTTTCCAAAGTTTGGAGAGGCTATCCAACGCCAACCCCAATCAGGCTATTGGCGAAGGACTTCCTCCGACC
TCCGAATCGCGCATGCATAGCCTTTTCTCCCCACAATCTCCGATCGGAAATGGCATTGATAACCTTCCACGCATA
ACTGGGAAGTCTATGATCGATGAGGACCCGGACGAGGAGACGGGCGAGCTGCTCAAGGATCCGGTGGGCTATGCG
GAGAACGGCCATTCTTCCAATATCTCCGCTGGGCGCCGAGCGACCAACCCTCAAATCCCGACCAACCGCTTTGCC
AATATGTCCCTATCAACCAACATGTCCTCGCCACCTTTGCAGAACTACCCTGGAGGTGGCGCGCAACGCATGGGC
GGTGGAACACCCACATCTGGATACCCGAACCAAGGCCATGGTTACCCATACAACGCTCAGCATACCCCACGCCAC
AGCCTGCCTGCTGCGAACCCGAATGACCTGAATCCTCCTTGCAACACTTTGTACGTCGGCAACTTGCCGCCAGAC
ACCTCCGAGGAAGAACTCAAGGCCCTTTTCTCCAAACAACGCGGGTACAAACGACTCTGTTTCCGAAACAAGCAG
AACGGACCCATGTGCTTTGTGGAATTCGACGAGGTCGCCATGGCAAGCAAAGCACTCAATGAGCTGTACGGCTAC
AAGCTGTCAAACAGTGTCAAGACTGGCATCCGTCTCAGCTTCTCAAAGAATCCGTTGGGTGTGCGCTCTGGTCAA
CCCGGCAGCATGAACTCATCCAACTCGCCCTCTGGGCAGGGCGCAGTCCCCGGAGGCAGCAGCTTGAGTGGAATC
CACAACAACATGTTCTCGGCCGTCAACGGCCCTCCTCCCGGACTGGCAGCACCCCCTGGTCTTGGCATGCCCATG
CCTGCGCCTCCGATGCGCAATGGCACCTCCATGCACAACCCCGTCAATCCGCATGCTCAAATGATGGGCAATACT
TCATACAACCCGAACTCGGGCCTGGGAATCCGAAACGGAGCCAATTCCATGATGATGTCGCCGCCGCCCCCTCCT
AATTCCGGCGGCAACAATCCGACACCGAACCTGAACGGCTATAATTCCTTTTACCCTGACTACATGATGGGTCGC
TAA
Transcript >Pro_DTO377G3_2|g3326.t1
ATGAGCGGCAGCTCTAGCCAGTCCACTCGTACGAGTCCCGGCTCTTTTGGAACTACGCAGCTCACAGAGTCCGTG
TCATCCGGTTCGCCCCCACAGCAGTCACTCCCTTCTTCGCAGGTGCCTTTGACGGCTCAGCATGCGATGTCGACC
GACGTGTACAGTCCGAATGCGTCGCAACCGCCTTCATCTATGAATCCATCTTTCTCATACCCTTTCTCCCCTATC
GGTACAACAGCTTCATTCGATACCAACATGCGCTTAGGCGATAACGATCGCAACCTCCAGGGTCTAAATGGCCTG
AATCGCGGAAACGGAGGCGCCATTCTCATGCGCAAACTGCCGCGAAATACGAGCCGCGAAGCCCTGCGCAGCATG
CTTCTCTTCGCCAAAGACTTTGTCGACGCCGACTTTGTCACCTTGGACCTGCCCGAGGATGATGGGTTCTTGACT
GCGATCGCGCGATTCATTACTTTGCCAGCCGCCGAAGAGGCCAGATCACTCCTCGATGGCAAGCCGAACTCCAAA
AACGACGCCAACATGGTCGTCGAGATGTACCCCGGTCCGATGGGCGCGAATCTGTCCAACACCCGCCGTAACACC
ATCGATCACACCGCCACCCGTGCGTTAATGGGTGCCTCGAACGGTCCCCTAGCGCGTCAATCCTCGCGCTTTAAC
GGCACTTTCCAAAGTTTGGAGAGGCTATCCAACGCCAACCCCAATCAGGCTATTGGCGAAGGACTTCCTCCGACC
TCCGAATCGCGCATGCATAGCCTTTTCTCCCCACAATCTCCGATCGGAAATGGCATTGATAACCTTCCACGCATA
ACTGGGAAGTCTATGATCGATGAGGACCCGGACGAGGAGACGGGCGAGCTGCTCAAGGATCCGGTGGGCTATGCG
GAGAACGGCCATTCTTCCAATATCTCCGCTGGGCGCCGAGCGACCAACCCTCAAATCCCGACCAACCGCTTTGCC
AATATGTCCCTATCAACCAACATGTCCTCGCCACCTTTGCAGAACTACCCTGGAGGTGGCGCGCAACGCATGGGC
GGTGGAACACCCACATCTGGATACCCGAACCAAGGCCATGGTTACCCATACAACGCTCAGCATACCCCACGCCAC
AGCCTGCCTGCTGCGAACCCGAATGACCTGAATCCTCCTTGCAACACTTTGTACGTCGGCAACTTGCCGCCAGAC
ACCTCCGAGGAAGAACTCAAGGCCCTTTTCTCCAAACAACGCGGGTACAAACGACTCTGTTTCCGAAACAAGCAG
AACGGACCCATGTGCTTTGTGGAATTCGACGAGGTCGCCATGGCAAGCAAAGCACTCAATGAGCTGTACGGCTAC
AAGCTGTCAAACAGTGTCAAGACTGGCATCCGTCTCAGCTTCTCAAAGAATCCGTTGGGTGTGCGCTCTGGTCAA
CCCGGCAGCATGAACTCATCCAACTCGCCCTCTGGGCAGGGCGCAGTCCCCGGAGGCAGCAGCTTGAGTGGAATC
CACAACAACATGTTCTCGGCCGTCAACGGCCCTCCTCCCGGACTGGCAGCACCCCCTGGTCTTGGCATGCCCATG
CCTGCGCCTCCGATGCGCAATGGCACCTCCATGCACAACCCCGTCAATCCGCATGCTCAAATGATGGGCAATACT
TCATACAACCCGAACTCGGGCCTGGGAATCCGAAACGGAGCCAATTCCATGATGATGTCGCCGCCGCCCCCTCCT
AATTCCGGCGGCAACAATCCGACACCGAACCTGAACGGCTATAATTCCTTTTACCCTGACTACATGATGGGTCGC
TAA
Gene >Pro_DTO377G3_2|g3326.t1
ATGAGCGGCAGCTCTAGCCAGTCCACTCGTACGAGTCCCGGCTCTTTTGGAACTACGCAGCTCACAGAGTCCGTG
TCATCCGGTTCGCCCCCACAGCAGTCACTCCCTTCTTCGCAGGTGCCTTTGACGGCTCAGCATGCGATGTCGACC
GACGTGTACAGTCCGAATGCGTCGCAACCGCCTTCATCTATGAATCCATCTTTCTCATACCCTTTCTCCCCTATC
GGTACAACAGCTTCATTCGATACCAACATGCGCTTAGGCGATAACGATCGCAACCTCCAGGGTCTAAATGGCCTG
AATCGCGGAAACGGAGGCGCCATTCTCATGCGCAAACTGCCGCGAAATACGAGCCGCGAAGCCCTGCGCAGCATG
CTTCTCTTCGCCAAAGACTTTGTCGACGCCGACTTTGTCACCTTGGACCTGCCCGAGGATGATGGGTTCTTGACT
GCGATCGCGCGATTCATTACTTTGCCAGCCGCCGAAGAGGCCAGATCACTCCTCGATGGCAAGCCGAACTCCAAA
AACGACGCCAACATGGTCGTCGAGATGTACCCCGGTCCGATGGGCGCGAATCTGTCCAACACCCGCCGTAACACC
ATCGATCACACCGCCACCCGTGCGTTAATGGGTGCCTCGAACGGTCCCCTAGCGCGTCAATCCTCGCGCTTTAAC
GGCACTTTCCAAAGTTTGGAGAGGCTATCCAACGCCAACCCCAATCAGGCTATTGGCGAAGGACTTCCTCCGACC
TCCGAATCGCGCATGCATAGCCTTTTCTCCCCACAATCTCCGATCGGAAATGGCATTGATAACCTTCCACGCATA
ACTGGGAAGTCTATGATCGATGAGGACCCGGACGAGGAGACGGGCGAGCTGCTCAAGGATCCGGTGGGCTATGCG
GAGAACGGCCATTCTTCCAATATCTCCGCTGGGCGCCGAGCGACCAACCCTCAAATCCCGACCAACCGCTTTGCC
AATATGTCCCTATCAACCAACATGTCCTCGCCACCTTTGCAGAACTACCCTGGAGGTGGCGCGCAACGCATGGGC
GGTGGAACACCCACATCTGGATACCCGAACCAAGGCCATGGTTACCCATACAACGCTCAGCATACCCCACGCCAC
AGCCTGCCTGCTGCGAACCCGAATGACCTGAATCCTCCTTGCAACACTTTGTACGTCGGCAACTTGCCGCCAGAC
ACCTCCGAGGAAGAACTCAAGGCCCTTTTCTCCAAACAACGCGGGTACAAACGACTCTGTTTCCGAAACAAGCAG
AACGGACCCATGTGCTTTGTGGAATTCGACGAGGTCGCCATGGCAAGCAAAGCACTCAATGAGCTGTACGGCTAC
AAGCTGTCAAACAGTGTCAAGACTGGCATCCGTCTCAGCTTCTCAAAGAATCCGTTGGGTGTGCGCTCTGGTCAA
CCCGGCAGCATGAACTCATCCAACTCGCCCTCTGGGCAGGGCGCAGTCCCCGGAGGCAGCAGCTTGAGTGGAATC
CACAACAACATGTTCTCGGCCGTCAACGGCCCTCCTCCCGGACTGGCAGCACCCCCTGGTCTTGGCATGCCCATG
CCTGCGCCTCCGATGCGCAATGGCACCTCCATGCACAACCCCGTCAATCCGCATGCTCAAATGATGGGCAATACT
TCATACAACCCGAACTCGGGCCTGGGAATCCGAAACGGAGCCAATTCCATGATGATGTCGCCGCCGCCCCCTCCT
AATTCCGGCGGCAACAATCCGACACCGAACCTGAACGGCTATAATTCCTTTTACCCTGACTACATGATGGGTCGC
TAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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