© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3326.t1 |
| Gene name | |
| Location | scaffold_05:358647..360450 |
| Strand | - |
| Gene length (bp) | 1803 |
| Transcript length (bp) | 1803 |
| Coding sequence length (bp) | 1803 |
| Protein length (aa) | 601 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-14 | 392 | 455 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 165.06 | 99.50 | 230.61 |
| 5d_25C | Five days - 25 degrees Celsius | 191.67 | 114.33 | 269.02 |
| 7d_25C | Seven days - 25 degrees Celsius | 226.11 | 134.33 | 317.89 |
| 10d_25C | Ten days - 25 degrees Celsius | 391.28 | 219.82 | 562.73 |
| 7d_15C | Seven days - 15 degrees Celsius | 183.48 | 110.14 | 256.82 |
| 7d_30C | Seven days - 30 degrees Celsius | 192.41 | 114.88 | 269.95 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.586703 | no |
| 3d_25C | 7d_25C | 0.170566 | no |
| 3d_25C | 7d_15C | 0.710144 | no |
| 3d_25C | 7d_30C | 0.569208 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.546547 | no |
| 5d_25C | 7d_15C | 0.895918 | no |
| 5d_25C | 7d_30C | 0.992129 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.400600 | no |
| 7d_25C | 7d_30C | 0.550861 | no |
| 7d_25C | 10d_25C | 0.013211 | yes |
| 7d_15C | 7d_30C | 0.885476 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.001278 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3326.t1 MSGSSSQSTRTSPGSFGTTQLTESVSSGSPPQQSLPSSQVPLTAQHAMSTDVYSPNASQPPSSMNPSFSYPFSPI GTTASFDTNMRLGDNDRNLQGLNGLNRGNGGAILMRKLPRNTSREALRSMLLFAKDFVDADFVTLDLPEDDGFLT AIARFITLPAAEEARSLLDGKPNSKNDANMVVEMYPGPMGANLSNTRRNTIDHTATRALMGASNGPLARQSSRFN GTFQSLERLSNANPNQAIGEGLPPTSESRMHSLFSPQSPIGNGIDNLPRITGKSMIDEDPDEETGELLKDPVGYA ENGHSSNISAGRRATNPQIPTNRFANMSLSTNMSSPPLQNYPGGGAQRMGGGTPTSGYPNQGHGYPYNAQHTPRH SLPAANPNDLNPPCNTLYVGNLPPDTSEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFDEVAMASKALNELYGY KLSNSVKTGIRLSFSKNPLGVRSGQPGSMNSSNSPSGQGAVPGGSSLSGIHNNMFSAVNGPPPGLAAPPGLGMPM PAPPMRNGTSMHNPVNPHAQMMGNTSYNPNSGLGIRNGANSMMMSPPPPPNSGGNNPTPNLNGYNSFYPDYMMGR * |
| Coding | >Pro_DTO377G3_2|g3326.t1 ATGAGCGGCAGCTCTAGCCAGTCCACTCGTACGAGTCCCGGCTCTTTTGGAACTACGCAGCTCACAGAGTCCGTG TCATCCGGTTCGCCCCCACAGCAGTCACTCCCTTCTTCGCAGGTGCCTTTGACGGCTCAGCATGCGATGTCGACC GACGTGTACAGTCCGAATGCGTCGCAACCGCCTTCATCTATGAATCCATCTTTCTCATACCCTTTCTCCCCTATC GGTACAACAGCTTCATTCGATACCAACATGCGCTTAGGCGATAACGATCGCAACCTCCAGGGTCTAAATGGCCTG AATCGCGGAAACGGAGGCGCCATTCTCATGCGCAAACTGCCGCGAAATACGAGCCGCGAAGCCCTGCGCAGCATG CTTCTCTTCGCCAAAGACTTTGTCGACGCCGACTTTGTCACCTTGGACCTGCCCGAGGATGATGGGTTCTTGACT GCGATCGCGCGATTCATTACTTTGCCAGCCGCCGAAGAGGCCAGATCACTCCTCGATGGCAAGCCGAACTCCAAA AACGACGCCAACATGGTCGTCGAGATGTACCCCGGTCCGATGGGCGCGAATCTGTCCAACACCCGCCGTAACACC ATCGATCACACCGCCACCCGTGCGTTAATGGGTGCCTCGAACGGTCCCCTAGCGCGTCAATCCTCGCGCTTTAAC GGCACTTTCCAAAGTTTGGAGAGGCTATCCAACGCCAACCCCAATCAGGCTATTGGCGAAGGACTTCCTCCGACC TCCGAATCGCGCATGCATAGCCTTTTCTCCCCACAATCTCCGATCGGAAATGGCATTGATAACCTTCCACGCATA ACTGGGAAGTCTATGATCGATGAGGACCCGGACGAGGAGACGGGCGAGCTGCTCAAGGATCCGGTGGGCTATGCG GAGAACGGCCATTCTTCCAATATCTCCGCTGGGCGCCGAGCGACCAACCCTCAAATCCCGACCAACCGCTTTGCC AATATGTCCCTATCAACCAACATGTCCTCGCCACCTTTGCAGAACTACCCTGGAGGTGGCGCGCAACGCATGGGC GGTGGAACACCCACATCTGGATACCCGAACCAAGGCCATGGTTACCCATACAACGCTCAGCATACCCCACGCCAC AGCCTGCCTGCTGCGAACCCGAATGACCTGAATCCTCCTTGCAACACTTTGTACGTCGGCAACTTGCCGCCAGAC ACCTCCGAGGAAGAACTCAAGGCCCTTTTCTCCAAACAACGCGGGTACAAACGACTCTGTTTCCGAAACAAGCAG AACGGACCCATGTGCTTTGTGGAATTCGACGAGGTCGCCATGGCAAGCAAAGCACTCAATGAGCTGTACGGCTAC AAGCTGTCAAACAGTGTCAAGACTGGCATCCGTCTCAGCTTCTCAAAGAATCCGTTGGGTGTGCGCTCTGGTCAA CCCGGCAGCATGAACTCATCCAACTCGCCCTCTGGGCAGGGCGCAGTCCCCGGAGGCAGCAGCTTGAGTGGAATC CACAACAACATGTTCTCGGCCGTCAACGGCCCTCCTCCCGGACTGGCAGCACCCCCTGGTCTTGGCATGCCCATG CCTGCGCCTCCGATGCGCAATGGCACCTCCATGCACAACCCCGTCAATCCGCATGCTCAAATGATGGGCAATACT TCATACAACCCGAACTCGGGCCTGGGAATCCGAAACGGAGCCAATTCCATGATGATGTCGCCGCCGCCCCCTCCT AATTCCGGCGGCAACAATCCGACACCGAACCTGAACGGCTATAATTCCTTTTACCCTGACTACATGATGGGTCGC TAA |
| Transcript | >Pro_DTO377G3_2|g3326.t1 ATGAGCGGCAGCTCTAGCCAGTCCACTCGTACGAGTCCCGGCTCTTTTGGAACTACGCAGCTCACAGAGTCCGTG TCATCCGGTTCGCCCCCACAGCAGTCACTCCCTTCTTCGCAGGTGCCTTTGACGGCTCAGCATGCGATGTCGACC GACGTGTACAGTCCGAATGCGTCGCAACCGCCTTCATCTATGAATCCATCTTTCTCATACCCTTTCTCCCCTATC GGTACAACAGCTTCATTCGATACCAACATGCGCTTAGGCGATAACGATCGCAACCTCCAGGGTCTAAATGGCCTG AATCGCGGAAACGGAGGCGCCATTCTCATGCGCAAACTGCCGCGAAATACGAGCCGCGAAGCCCTGCGCAGCATG CTTCTCTTCGCCAAAGACTTTGTCGACGCCGACTTTGTCACCTTGGACCTGCCCGAGGATGATGGGTTCTTGACT GCGATCGCGCGATTCATTACTTTGCCAGCCGCCGAAGAGGCCAGATCACTCCTCGATGGCAAGCCGAACTCCAAA AACGACGCCAACATGGTCGTCGAGATGTACCCCGGTCCGATGGGCGCGAATCTGTCCAACACCCGCCGTAACACC ATCGATCACACCGCCACCCGTGCGTTAATGGGTGCCTCGAACGGTCCCCTAGCGCGTCAATCCTCGCGCTTTAAC GGCACTTTCCAAAGTTTGGAGAGGCTATCCAACGCCAACCCCAATCAGGCTATTGGCGAAGGACTTCCTCCGACC TCCGAATCGCGCATGCATAGCCTTTTCTCCCCACAATCTCCGATCGGAAATGGCATTGATAACCTTCCACGCATA ACTGGGAAGTCTATGATCGATGAGGACCCGGACGAGGAGACGGGCGAGCTGCTCAAGGATCCGGTGGGCTATGCG GAGAACGGCCATTCTTCCAATATCTCCGCTGGGCGCCGAGCGACCAACCCTCAAATCCCGACCAACCGCTTTGCC AATATGTCCCTATCAACCAACATGTCCTCGCCACCTTTGCAGAACTACCCTGGAGGTGGCGCGCAACGCATGGGC GGTGGAACACCCACATCTGGATACCCGAACCAAGGCCATGGTTACCCATACAACGCTCAGCATACCCCACGCCAC AGCCTGCCTGCTGCGAACCCGAATGACCTGAATCCTCCTTGCAACACTTTGTACGTCGGCAACTTGCCGCCAGAC ACCTCCGAGGAAGAACTCAAGGCCCTTTTCTCCAAACAACGCGGGTACAAACGACTCTGTTTCCGAAACAAGCAG AACGGACCCATGTGCTTTGTGGAATTCGACGAGGTCGCCATGGCAAGCAAAGCACTCAATGAGCTGTACGGCTAC AAGCTGTCAAACAGTGTCAAGACTGGCATCCGTCTCAGCTTCTCAAAGAATCCGTTGGGTGTGCGCTCTGGTCAA CCCGGCAGCATGAACTCATCCAACTCGCCCTCTGGGCAGGGCGCAGTCCCCGGAGGCAGCAGCTTGAGTGGAATC CACAACAACATGTTCTCGGCCGTCAACGGCCCTCCTCCCGGACTGGCAGCACCCCCTGGTCTTGGCATGCCCATG CCTGCGCCTCCGATGCGCAATGGCACCTCCATGCACAACCCCGTCAATCCGCATGCTCAAATGATGGGCAATACT TCATACAACCCGAACTCGGGCCTGGGAATCCGAAACGGAGCCAATTCCATGATGATGTCGCCGCCGCCCCCTCCT AATTCCGGCGGCAACAATCCGACACCGAACCTGAACGGCTATAATTCCTTTTACCCTGACTACATGATGGGTCGC TAA |
| Gene | >Pro_DTO377G3_2|g3326.t1 ATGAGCGGCAGCTCTAGCCAGTCCACTCGTACGAGTCCCGGCTCTTTTGGAACTACGCAGCTCACAGAGTCCGTG TCATCCGGTTCGCCCCCACAGCAGTCACTCCCTTCTTCGCAGGTGCCTTTGACGGCTCAGCATGCGATGTCGACC GACGTGTACAGTCCGAATGCGTCGCAACCGCCTTCATCTATGAATCCATCTTTCTCATACCCTTTCTCCCCTATC GGTACAACAGCTTCATTCGATACCAACATGCGCTTAGGCGATAACGATCGCAACCTCCAGGGTCTAAATGGCCTG AATCGCGGAAACGGAGGCGCCATTCTCATGCGCAAACTGCCGCGAAATACGAGCCGCGAAGCCCTGCGCAGCATG CTTCTCTTCGCCAAAGACTTTGTCGACGCCGACTTTGTCACCTTGGACCTGCCCGAGGATGATGGGTTCTTGACT GCGATCGCGCGATTCATTACTTTGCCAGCCGCCGAAGAGGCCAGATCACTCCTCGATGGCAAGCCGAACTCCAAA AACGACGCCAACATGGTCGTCGAGATGTACCCCGGTCCGATGGGCGCGAATCTGTCCAACACCCGCCGTAACACC ATCGATCACACCGCCACCCGTGCGTTAATGGGTGCCTCGAACGGTCCCCTAGCGCGTCAATCCTCGCGCTTTAAC GGCACTTTCCAAAGTTTGGAGAGGCTATCCAACGCCAACCCCAATCAGGCTATTGGCGAAGGACTTCCTCCGACC TCCGAATCGCGCATGCATAGCCTTTTCTCCCCACAATCTCCGATCGGAAATGGCATTGATAACCTTCCACGCATA ACTGGGAAGTCTATGATCGATGAGGACCCGGACGAGGAGACGGGCGAGCTGCTCAAGGATCCGGTGGGCTATGCG GAGAACGGCCATTCTTCCAATATCTCCGCTGGGCGCCGAGCGACCAACCCTCAAATCCCGACCAACCGCTTTGCC AATATGTCCCTATCAACCAACATGTCCTCGCCACCTTTGCAGAACTACCCTGGAGGTGGCGCGCAACGCATGGGC GGTGGAACACCCACATCTGGATACCCGAACCAAGGCCATGGTTACCCATACAACGCTCAGCATACCCCACGCCAC AGCCTGCCTGCTGCGAACCCGAATGACCTGAATCCTCCTTGCAACACTTTGTACGTCGGCAACTTGCCGCCAGAC ACCTCCGAGGAAGAACTCAAGGCCCTTTTCTCCAAACAACGCGGGTACAAACGACTCTGTTTCCGAAACAAGCAG AACGGACCCATGTGCTTTGTGGAATTCGACGAGGTCGCCATGGCAAGCAAAGCACTCAATGAGCTGTACGGCTAC AAGCTGTCAAACAGTGTCAAGACTGGCATCCGTCTCAGCTTCTCAAAGAATCCGTTGGGTGTGCGCTCTGGTCAA CCCGGCAGCATGAACTCATCCAACTCGCCCTCTGGGCAGGGCGCAGTCCCCGGAGGCAGCAGCTTGAGTGGAATC CACAACAACATGTTCTCGGCCGTCAACGGCCCTCCTCCCGGACTGGCAGCACCCCCTGGTCTTGGCATGCCCATG CCTGCGCCTCCGATGCGCAATGGCACCTCCATGCACAACCCCGTCAATCCGCATGCTCAAATGATGGGCAATACT TCATACAACCCGAACTCGGGCCTGGGAATCCGAAACGGAGCCAATTCCATGATGATGTCGCCGCCGCCCCCTCCT AATTCCGGCGGCAACAATCCGACACCGAACCTGAACGGCTATAATTCCTTTTACCCTGACTACATGATGGGTCGC TAA |