© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3323.t1 |
| Gene name | |
| Location | scaffold_05:345287..347128 |
| Strand | - |
| Gene length (bp) | 1841 |
| Transcript length (bp) | 1779 |
| Coding sequence length (bp) | 1779 |
| Protein length (aa) | 593 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07732 | Cu-oxidase_3 | Multicopper oxidase | 7.8E-39 | 87 | 205 |
| PF07731 | Cu-oxidase_2 | Multicopper oxidase | 1.7E-36 | 432 | 558 |
| PF00394 | Cu-oxidase | Multicopper oxidase | 9.7E-31 | 217 | 363 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0005507 | copper ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.25 | 0.0 | 0.57 |
| 5d_25C | Five days - 25 degrees Celsius | 0.15 | 0.0 | 0.41 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.03 | 0.0 | 0.12 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.04 | 0.0 | 0.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.25 | 0.0 | 0.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3323.t1 MRFSSIIFLANLLGAGIACADCSYKPSTTLRPIATRTRLRNTYRPTGTPCAGNAPNDRSVWCNYSIDTDYENVVP DTGVTREYWFEVKEVTLSPDGFMAPRPVMTINGTFPGPPLVADWGDWVVVHVSNHLYKAMNGSSIHWHGIRQNYT NPNDGVPSLTQCPIAPGSTMTYKWRAGQYGSSWYHSHIGLQAWEGVYGAIIINGPATANYDVDKGALFLSDWTHE TVDQLHQDVQLRGPVRKLSNGLLNGKNVYGNGTNTTGSPFHMKVQKGKSYRLRLVNPAIDTHWKFTIDNHIMTVI AMDLVPIKPFVTNVVSIGMGQRYDVIITANQESVAESFWMRAIPADRCSQNEMAGNIRGIVYYGNRPKQPRTQSF PFTNVCEDELLTNLIPHVPKNVDLPVSPVWDRNVTVSNTRNAQNFFRWQFNSTSMNVSWENPTLMQVYHSDPGFS TSSGVIELPFKNKWVYLFIQNTLVTHPIHLHGHDFSILAQGQPGPGKPQWDGSIITQNPPRRDTAVLAGGGWLLI AFKTNNPGAWLMHCHIGWHVDEGLALQFIERQDEIRDLIDYTPFNENCAAWDKYVKTKNVVQQDSGV* |
| Coding | >Pro_DTO377G3_2|g3323.t1 ATGAGATTTTCATCCATTATATTCTTGGCAAATTTACTTGGTGCTGGCATTGCCTGTGCCGATTGCTCCTACAAA CCATCAACCACACTGCGACCAATAGCCACGAGAACCCGACTTCGAAATACCTATAGGCCTACCGGTACTCCATGT GCAGGAAATGCCCCCAATGACAGATCTGTTTGGTGCAATTACAGCATTGACACAGACTACGAGAATGTCGTCCCA GACACAGGTGTTACGCGCGAATACTGGTTTGAGGTCAAAGAAGTCACACTCTCTCCCGATGGATTCATGGCTCCA CGTCCGGTCATGACCATCAATGGCACCTTTCCTGGCCCGCCTCTTGTTGCAGACTGGGGCGACTGGGTGGTCGTC CACGTCTCCAACCATCTGTATAAGGCAATGAACGGTTCGAGTATTCACTGGCACGGTATTCGTCAGAACTACACA AATCCGAATGATGGCGTTCCTTCGCTCACCCAGTGTCCTATTGCTCCCGGCTCGACTATGACGTATAAATGGCGA GCTGGCCAGTATGGATCCTCGTGGTATCACTCTCATATCGGTTTGCAAGCCTGGGAAGGTGTATATGGTGCTATC ATTATCAATGGACCGGCGACTGCAAATTATGATGTGGACAAGGGCGCATTGTTTCTGAGTGATTGGACGCATGAA ACTGTGGATCAACTACACCAAGATGTCCAACTTCGCGGTCCTGTCAGGAAGTTGTCAAATGGACTCCTCAATGGC AAGAATGTCTATGGAAACGGTACAAATACTACCGGGTCTCCGTTCCACATGAAAGTGCAAAAAGGAAAATCTTAC CGGTTGCGACTTGTGAACCCTGCCATCGACACCCATTGGAAGTTCACTATTGACAACCACATAATGACTGTTATT GCAATGGATCTCGTTCCTATAAAGCCATTCGTCACAAACGTCGTCAGCATTGGAATGGGCCAACGCTATGATGTT ATCATCACAGCCAACCAGGAATCCGTGGCCGAATCCTTCTGGATGAGAGCTATACCAGCCGATAGATGCTCCCAA AATGAGATGGCCGGCAACATCCGCGGCATCGTCTACTACGGCAACAGGCCCAAGCAACCGCGCACGCAGTCATTC CCCTTCACAAACGTATGCGAAGACGAGCTTTTGACGAATCTCATACCTCACGTCCCCAAAAACGTCGATCTACCA GTTTCGCCAGTTTGGGATAGGAACGTGACGGTCAGCAATACCAGGAACGCACAGAATTTCTTCCGCTGGCAGTTC AATTCCACCTCGATGAACGTGAGCTGGGAGAACCCAACCCTGATGCAAGTCTACCATAGCGATCCGGGATTTTCT ACTTCAAGTGGCGTGATTGAGTTGCCCTTCAAGAATAAATGGGTATATCTCTTCATCCAAAACACCCTCGTTACT CATCCCATTCACCTTCACGGCCACGACTTCTCCATCCTAGCGCAAGGACAGCCTGGGCCTGGGAAGCCACAATGG GATGGTTCTATTATTACGCAGAATCCCCCACGTCGAGATACGGCCGTGCTAGCCGGAGGTGGGTGGCTGTTAATA GCTTTCAAGACGAATAACCCCGGAGCGTGGTTGATGCACTGTCACATTGGGTGGCATGTCGATGAGGGTCTTGCA TTACAGTTTATTGAGCGACAAGATGAGATCCGGGATCTCATTGATTATACTCCGTTTAATGAGAATTGTGCTGCG TGGGATAAATATGTCAAGACGAAGAATGTTGTGCAGCAAGACTCGGGAGTTTGA |
| Transcript | >Pro_DTO377G3_2|g3323.t1 ATGAGATTTTCATCCATTATATTCTTGGCAAATTTACTTGGTGCTGGCATTGCCTGTGCCGATTGCTCCTACAAA CCATCAACCACACTGCGACCAATAGCCACGAGAACCCGACTTCGAAATACCTATAGGCCTACCGGTACTCCATGT GCAGGAAATGCCCCCAATGACAGATCTGTTTGGTGCAATTACAGCATTGACACAGACTACGAGAATGTCGTCCCA GACACAGGTGTTACGCGCGAATACTGGTTTGAGGTCAAAGAAGTCACACTCTCTCCCGATGGATTCATGGCTCCA CGTCCGGTCATGACCATCAATGGCACCTTTCCTGGCCCGCCTCTTGTTGCAGACTGGGGCGACTGGGTGGTCGTC CACGTCTCCAACCATCTGTATAAGGCAATGAACGGTTCGAGTATTCACTGGCACGGTATTCGTCAGAACTACACA AATCCGAATGATGGCGTTCCTTCGCTCACCCAGTGTCCTATTGCTCCCGGCTCGACTATGACGTATAAATGGCGA GCTGGCCAGTATGGATCCTCGTGGTATCACTCTCATATCGGTTTGCAAGCCTGGGAAGGTGTATATGGTGCTATC ATTATCAATGGACCGGCGACTGCAAATTATGATGTGGACAAGGGCGCATTGTTTCTGAGTGATTGGACGCATGAA ACTGTGGATCAACTACACCAAGATGTCCAACTTCGCGGTCCTGTCAGGAAGTTGTCAAATGGACTCCTCAATGGC AAGAATGTCTATGGAAACGGTACAAATACTACCGGGTCTCCGTTCCACATGAAAGTGCAAAAAGGAAAATCTTAC CGGTTGCGACTTGTGAACCCTGCCATCGACACCCATTGGAAGTTCACTATTGACAACCACATAATGACTGTTATT GCAATGGATCTCGTTCCTATAAAGCCATTCGTCACAAACGTCGTCAGCATTGGAATGGGCCAACGCTATGATGTT ATCATCACAGCCAACCAGGAATCCGTGGCCGAATCCTTCTGGATGAGAGCTATACCAGCCGATAGATGCTCCCAA AATGAGATGGCCGGCAACATCCGCGGCATCGTCTACTACGGCAACAGGCCCAAGCAACCGCGCACGCAGTCATTC CCCTTCACAAACGTATGCGAAGACGAGCTTTTGACGAATCTCATACCTCACGTCCCCAAAAACGTCGATCTACCA GTTTCGCCAGTTTGGGATAGGAACGTGACGGTCAGCAATACCAGGAACGCACAGAATTTCTTCCGCTGGCAGTTC AATTCCACCTCGATGAACGTGAGCTGGGAGAACCCAACCCTGATGCAAGTCTACCATAGCGATCCGGGATTTTCT ACTTCAAGTGGCGTGATTGAGTTGCCCTTCAAGAATAAATGGGTATATCTCTTCATCCAAAACACCCTCGTTACT CATCCCATTCACCTTCACGGCCACGACTTCTCCATCCTAGCGCAAGGACAGCCTGGGCCTGGGAAGCCACAATGG GATGGTTCTATTATTACGCAGAATCCCCCACGTCGAGATACGGCCGTGCTAGCCGGAGGTGGGTGGCTGTTAATA GCTTTCAAGACGAATAACCCCGGAGCGTGGTTGATGCACTGTCACATTGGGTGGCATGTCGATGAGGGTCTTGCA TTACAGTTTATTGAGCGACAAGATGAGATCCGGGATCTCATTGATTATACTCCGTTTAATGAGAATTGTGCTGCG TGGGATAAATATGTCAAGACGAAGAATGTTGTGCAGCAAGACTCGGGAGTTTGA |
| Gene | >Pro_DTO377G3_2|g3323.t1 ATGAGATTTTCATCCATTATATTCTTGGCAAATTTACTTGGTGCTGGCATTGCCTGTGCCGATTGCTCCTACAAA CCATCAACCACACTGCGACCAATAGCCACGAGAACCCGACTTCGAAATACCTATAGGCCTACCGGTACTCCATGT GCAGGAAATGCCCCCAATGACAGATCTGTTTGGTGCAATTACAGCATTGACACAGACTACGAGAATGTCGTCCCA GACACAGGTGTTACGCGCGAATACTGGTTTGAGGTCAAAGAAGTCACACTCTCTCCCGATGGATTCATGGCTCCA CGTCCGGTCATGACCATCAATGGCACCTTTCCTGGCCCGCCTCTTGTTGCAGACTGGGGCGACTGGGTGGTCGTC CACGTCTCCAACCATCTGTATAAGGCAATGAACGGTTCGAGTATTCACTGGCACGGTATTCGTCAGAACTACACA AATCCGAATGATGGCGTTCCTTCGCTCACCCAGTGTCCTATTGCTCCCGGCTCGACTATGACGTATAAATGGCGA GCTGGCCAGTATGGATCCTCGTGGTATCACTCTCATATCGGTTTGCAAGCCTGGGAAGGTGTATATGGTGCTATC ATTATCAATGGACCGGCGACTGCAAATTATGATGTGGACAAGGGCGCATTGTTTCTGAGTGATTGGACGCATGAA ACTGTGGATCAACTACACCAAGATGTCCAACTTCGCGGTCCTGTCAGGAAGTTGTCAAATGGACTCCTCAATGGC AAGAATGTCTATGGAAACGGTACAAATACTACCGGGTCTCCGTTCCACATGAAAGTGCAAAAAGGAAAATCTTAC CGGTTGCGACTTGTGAACCCTGCCATCGACACCCATTGGAAGTTCACTATTGACAACCACATAATGACTGTTATT GCAATGGATCTCGTTCCTATAAAGCCATTCGTCACAAACGTCGTCAGCATTGGAATGGGTTCGTTTCTTGGCATC CCTATCGCTCTAAACATACGAATCCAGCTAATTTTATACATCCAGGCCAACGCTATGATGTTATCATCACAGCCA ACCAGGAATCCGTGGCCGAATCCTTCTGGATGAGAGCTATACCAGCCGATAGATGCTCCCAAAATGAGATGGCCG GCAACATCCGCGGCATCGTCTACTACGGCAACAGGCCCAAGCAACCGCGCACGCAGTCATTCCCCTTCACAAACG TATGCGAAGACGAGCTTTTGACGAATCTCATACCTCACGTCCCCAAAAACGTCGATCTACCAGTTTCGCCAGTTT GGGATAGGAACGTGACGGTCAGCAATACCAGGAACGCACAGAATTTCTTCCGCTGGCAGTTCAATTCCACCTCGA TGAACGTGAGCTGGGAGAACCCAACCCTGATGCAAGTCTACCATAGCGATCCGGGATTTTCTACTTCAAGTGGCG TGATTGAGTTGCCCTTCAAGAATAAATGGGTATATCTCTTCATCCAAAACACCCTCGTTACTCATCCCATTCACC TTCACGGCCACGACTTCTCCATCCTAGCGCAAGGACAGCCTGGGCCTGGGAAGCCACAATGGGATGGTTCTATTA TTACGCAGAATCCCCCACGTCGAGATACGGCCGTGCTAGCCGGAGGTGGGTGGCTGTTAATAGCTTTCAAGACGA ATAACCCCGGAGCGTGGTTGATGCACTGTCACATTGGGTGGCATGTCGATGAGGGTCTTGCATTACAGTTTATTG AGCGACAAGATGAGATCCGGGATCTCATTGATTATACTCCGTTTAATGAGAATTGTGCTGCGTGGGATAAATATG TCAAGACGAAGAATGTTGTGCAGCAAGACTCGGGAGTTTGA |