Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g3322.t1
Gene name
Location	scaffold_05:343821..344846
Strand	+
Gene length (bp)	1025
Transcript length (bp)	579
Coding sequence length (bp)	579
Protein length (aa)	193

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04193	PQ-loop	PQ loop repeat	2.2E-19	11	69

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	9	31	22
2	41	63	22
3	100	122	22
4	135	157	22
5	164	186	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
3d_25C	Three days - 25 degrees Celsius	0.04	0.0	0.30
5d_25C	Five days - 25 degrees Celsius	0.18	0.0	0.56
7d_25C	Seven days - 25 degrees Celsius	0.05	0.0	0.30
10d_25C	Ten days - 25 degrees Celsius	0.08	0.0	0.35
7d_15C	Seven days - 15 degrees Celsius	0.05	0.0	0.33
7d_30C	Seven days - 30 degrees Celsius	0.29	0.0	0.93

Differential expression

Label1	Label2	Q-value	Significant difference
3d_25C	5d_25C	1.0	no
3d_25C	7d_25C	1.0	no
3d_25C	7d_15C	1.0	no
3d_25C	7d_30C	1.0	no
3d_25C	10d_25C	1.0	no
5d_25C	7d_25C	1.0	no
5d_25C	7d_15C	1.0	no
5d_25C	7d_30C	1.0	no
5d_25C	10d_25C	1.0	no
7d_25C	7d_15C	1.0	no
7d_25C	7d_30C	1.0	no
7d_25C	10d_25C	1.0	no
7d_15C	7d_30C	1.0	no
7d_15C	10d_25C	1.0	no
7d_30C	10d_25C	1.0	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g3322.t1 MSSENNITLASNVLGTIGTVLWCIQLIPQIWYNWRRKNTDGFPAAMMFLWASCSVPMGAYLILQQVNIPLQIQPQ IFGFFSLVSWSQVLHYNHNYSKTKAVLVCLGTIVLFGGLEALLILTLRIPYNNGVTWPDIVVGVIAAIILIAGLV PPYFELWKRDGRVIGFNWVFLCIDTLGGLFSLFALGQAWSAS*
Coding	>Pro_DTO377G3_2\|g3322.t1 ATGTCATCAGAGAATAATATCACACTGGCATCGAACGTCCTCGGCACCATCGGGACGGTTCTCTGGTGCATCCAA CTCATACCACAGATCTGGTATAATTGGCGCCGTAAGAACACAGATGGATTCCCTGCAGCGATGATGTTTCTGTGG GCAAGCTGCTCGGTTCCAATGGGCGCATATCTGATTCTGCAGCAAGTCAATATCCCGTTGCAGATTCAGCCTCAG ATCTTCGGATTCTTTTCGCTGGTTAGTTGGAGTCAAGTTCTTCATTATAACCACAACTATAGCAAAACTAAGGCT GTTCTGGTATGCTTAGGCACAATTGTTTTATTTGGGGGATTGGAGGCTCTTCTCATCCTAACATTGAGAATACCA TATAATAACGGGGTAACATGGCCCGACATCGTGGTTGGGGTTATAGCCGCCATTATCCTCATTGCAGGACTAGTG CCGCCGTATTTTGAATTGTGGAAGAGAGACGGGCGTGTGATTGGCTTCAATTGGGTCTTCCTCTGCATCGACACG TTGGGTGGGCTGTTTTCTCTCTTCGCATTAGGTCAGGCCTGGTCTGCATCCTAG
Transcript	>Pro_DTO377G3_2\|g3322.t1 ATGTCATCAGAGAATAATATCACACTGGCATCGAACGTCCTCGGCACCATCGGGACGGTTCTCTGGTGCATCCAA CTCATACCACAGATCTGGTATAATTGGCGCCGTAAGAACACAGATGGATTCCCTGCAGCGATGATGTTTCTGTGG GCAAGCTGCTCGGTTCCAATGGGCGCATATCTGATTCTGCAGCAAGTCAATATCCCGTTGCAGATTCAGCCTCAG ATCTTCGGATTCTTTTCGCTGGTTAGTTGGAGTCAAGTTCTTCATTATAACCACAACTATAGCAAAACTAAGGCT GTTCTGGTATGCTTAGGCACAATTGTTTTATTTGGGGGATTGGAGGCTCTTCTCATCCTAACATTGAGAATACCA TATAATAACGGGGTAACATGGCCCGACATCGTGGTTGGGGTTATAGCCGCCATTATCCTCATTGCAGGACTAGTG CCGCCGTATTTTGAATTGTGGAAGAGAGACGGGCGTGTGATTGGCTTCAATTGGGTCTTCCTCTGCATCGACACG TTGGGTGGGCTGTTTTCTCTCTTCGCATTAGGTCAGGCCTGGTCTGCATCCTAG
Gene	>Pro_DTO377G3_2\|g3322.t1 ATGTCATCAGAGAATAATATCACACTGGCATCGAACGTCCTCGGCACCATCGGGACGGTTCTCTGGTGCATCCAA CTCATACCACAGATCTGGTATAATTGGCGCCGTAAGAACACAGATGGATTCCCTGCAGCGATGATGTTTCTGTGG GCAAGCTGTAAGTTATTTCCCTGTCCCTTCATCAGGTTTAGGGCCTCGAGGATTATATTTCGAGTCTCTTGATAT ATGAAGCATGTCACCTAATATAGGAAGGGGAAGGGAGGAAAAAAAAAAGAAACCTTCGAGATCAAAATTGGCTTA CATTTGTGATTCCTGTAGGCTCGGTTCCAATGGGCGCATATCTGATTCTGCAGGTAAGTTGAATTACCCTAATTG GCAGACTTCCTGTCTAGTAATTTCGAAATTTTTTTGTATCTGCATCTATCGCTGACGGCTATCTTTATGATTCTT GCTATAGCAAGTCAATATCCCGTTGCAGATTCAGCCTCAGATCTTCGGATTCTTTTCGCTGGTTAGTTGGAGTCA AGTTCTTCATTATAACCAGTGAGTTGGTTTCATGTATGGATTTATTGTGATCGAACTGCTAATCTCAGCTCATCA ATTTTAATAGCAACTATAGCAAAACTAAGGCTGTTCTGGTATGCTTAGGCACAATTGTTTTATTTGGGGGATTGG AGGCTCTTCTCATCCTAACATTGAGAGTATTATCCATGTTTCTTTCTATTCTTTTTTTCTGATGGAAGATCTAAT CAAACTTGACAGATACCATATAATAACGGGGTAACATGGCCCGACATCGTGGTTGGGGTTATAGCCGCCATTATC CTCATTGCAGGACTAGTGCCGCCGTATTTTGAATTGTGGAAGAGAGACGGGCGTGTGATTGGCTTCAGTGGGTTT TGTTCTGACTTACAGCGCTTGATGGACACCTGCTGATGTTAATAGATTGGGTCTTCCTCTGCATCGACACGTTGG GTGGGCTGTTTTCTCTCTTCGCATTAGGTCAGGCCTGGTCTGCATCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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