© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3320.t1 |
| Gene name | |
| Location | scaffold_05:338216..340160 |
| Strand | - |
| Gene length (bp) | 1944 |
| Transcript length (bp) | 1719 |
| Coding sequence length (bp) | 1719 |
| Protein length (aa) | 573 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00501 | AMP-binding | AMP-binding enzyme | 6.4E-93 | 26 | 460 |
| PF13193 | AMP-binding_C | AMP-binding enzyme C-terminal domain | 6.9E-12 | 469 | 551 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.73 | 0.01 | 1.45 |
| 5d_25C | Five days - 25 degrees Celsius | 0.26 | 0.00 | 0.66 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.17 | 0.00 | 0.44 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.05 | 0.00 | 0.17 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.06 | 0.00 | 0.20 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.14 | 0.00 | 0.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.234491 | no |
| 3d_25C | 7d_25C | 0.124909 | no |
| 3d_25C | 7d_15C | 0.196664 | no |
| 3d_25C | 7d_30C | 0.104111 | no |
| 3d_25C | 10d_25C | 0.193405 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 1.000000 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 1.000000 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 1.000000 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3320.t1 MDSNLALVYGPTEPQLCLKTMGALIEDQAAQFGDRPAVVFPWQSVRLSYRQLADRSKALAGEMLEMGLHHGDCVG ILAGNCYQYVEVFLAGARIGCPVVVLNNTYTPAELENAVLRSSCKVVFHATSIGSRDLTGHIRILQGTQYPNPAL PDLRRIISLGLGEFRTGAIEVQLYDTVTSNSPSVSINNATLEHAERQVTPQDVVNLQFTSGTTGSPKAAMLTHTN LINNAQFVGRAMQLTPEDVICCPPPMFHCFGLVLGFLSSFFYGSSIVFPSDYFDVAKVVDAIIDEDATVLLGVPT MYVAELEVMAKTGQRPRRLRTGLASGSAVSQNLMNQLREIMGVEKMLIAYGMTETSPVSFITSLDDSDEKGTTTV GRVIPHTAAKVIDEKGNTLARGQRGELCTSGFVLQKGYWKNEEKTKEVMRRDENGVLWMHTGDEAMIDSDGYAHI TGRIKDLIIRGGENIFPREIEERLMSHASVSEASVVGIKDERYGEVVGCFLKASVQFQRPSIQELQQFVGERLGR HKAPKHVFWLGEKGVGDDFPKTGSGKHQKHMMRDIGNRLVGMFKAKL* |
| Coding | >Pro_DTO377G3_2|g3320.t1 ATGGATTCCAACCTCGCACTTGTCTATGGCCCTACAGAGCCCCAGCTATGTCTCAAGACTATGGGCGCTCTCATC GAGGACCAGGCAGCCCAATTTGGTGACCGTCCTGCCGTTGTCTTTCCATGGCAGTCCGTCCGGCTGTCATATCGC CAACTGGCGGACCGGAGCAAAGCCCTAGCTGGAGAGATGCTTGAAATGGGACTGCACCATGGGGACTGTGTGGGT ATTTTGGCAGGCAACTGCTACCAATATGTTGAAGTTTTCCTTGCTGGTGCTCGAATCGGATGTCCTGTTGTTGTG CTGAACAATACATACACGCCTGCAGAGCTTGAAAATGCCGTCCTAAGGAGTTCTTGCAAGGTTGTCTTCCATGCT ACCAGCATCGGCTCTCGGGACCTGACAGGTCATATCAGAATACTTCAAGGGACACAATATCCAAATCCAGCACTC CCCGATCTCCGCCGGATTATCTCACTCGGACTTGGAGAATTCCGCACTGGAGCTATTGAGGTTCAGCTCTATGAC ACGGTTACTTCGAATAGTCCTTCTGTGTCTATAAACAATGCGACACTCGAGCACGCAGAGAGACAGGTTACTCCC CAAGATGTGGTTAACTTGCAATTTACTTCTGGAACCACGGGGTCTCCGAAAGCTGCTATGCTCACACATACGAAC CTCATCAACAATGCACAATTTGTCGGAAGAGCAATGCAACTGACCCCGGAAGATGTGATTTGTTGCCCGCCACCC ATGTTCCATTGCTTTGGTCTGGTGTTAGGATTTCTTTCATCATTTTTCTACGGAAGTTCAATCGTCTTTCCATCT GACTATTTTGATGTCGCAAAGGTAGTCGACGCCATCATCGACGAAGACGCCACGGTTCTTCTCGGCGTTCCAACC ATGTACGTGGCCGAGTTAGAAGTGATGGCAAAGACAGGACAGAGACCCCGGCGACTACGGACAGGACTTGCATCT GGCTCGGCAGTCTCACAAAATCTCATGAACCAGCTGCGAGAGATTATGGGCGTCGAGAAAATGCTGATTGCATAC GGAATGACAGAGACCAGTCCTGTTAGCTTTATTACTTCCCTGGACGATAGCGATGAGAAAGGTACAACAACTGTC GGTCGAGTCATTCCGCATACGGCTGCAAAGGTCATTGATGAAAAGGGCAATACCTTGGCTCGAGGGCAGCGAGGA GAGCTCTGCACAAGTGGATTTGTGCTACAAAAGGGATACTGGAAGAATGAAGAGAAGACCAAGGAGGTGATGCGA AGAGACGAAAACGGCGTCTTATGGATGCACACTGGAGACGAAGCTATGATTGATTCGGATGGATATGCCCATATC ACCGGTCGGATCAAAGATCTTATTATTCGAGGTGGAGAGAATATCTTCCCGCGAGAAATTGAAGAACGATTGATG TCCCATGCATCAGTTTCCGAGGCTAGTGTAGTCGGTATCAAGGATGAGAGATACGGTGAGGTCGTTGGCTGTTTC TTGAAGGCATCGGTGCAGTTTCAGAGGCCCAGTATCCAAGAGCTCCAGCAGTTTGTCGGAGAGAGGCTCGGCCGA CACAAAGCCCCCAAACATGTGTTTTGGCTAGGAGAGAAAGGTGTTGGTGATGACTTCCCGAAGACTGGCAGTGGT AAGCATCAAAAACACATGATGCGGGACATTGGAAATCGGTTGGTGGGTATGTTCAAGGCGAAACTTTAG |
| Transcript | >Pro_DTO377G3_2|g3320.t1 ATGGATTCCAACCTCGCACTTGTCTATGGCCCTACAGAGCCCCAGCTATGTCTCAAGACTATGGGCGCTCTCATC GAGGACCAGGCAGCCCAATTTGGTGACCGTCCTGCCGTTGTCTTTCCATGGCAGTCCGTCCGGCTGTCATATCGC CAACTGGCGGACCGGAGCAAAGCCCTAGCTGGAGAGATGCTTGAAATGGGACTGCACCATGGGGACTGTGTGGGT ATTTTGGCAGGCAACTGCTACCAATATGTTGAAGTTTTCCTTGCTGGTGCTCGAATCGGATGTCCTGTTGTTGTG CTGAACAATACATACACGCCTGCAGAGCTTGAAAATGCCGTCCTAAGGAGTTCTTGCAAGGTTGTCTTCCATGCT ACCAGCATCGGCTCTCGGGACCTGACAGGTCATATCAGAATACTTCAAGGGACACAATATCCAAATCCAGCACTC CCCGATCTCCGCCGGATTATCTCACTCGGACTTGGAGAATTCCGCACTGGAGCTATTGAGGTTCAGCTCTATGAC ACGGTTACTTCGAATAGTCCTTCTGTGTCTATAAACAATGCGACACTCGAGCACGCAGAGAGACAGGTTACTCCC CAAGATGTGGTTAACTTGCAATTTACTTCTGGAACCACGGGGTCTCCGAAAGCTGCTATGCTCACACATACGAAC CTCATCAACAATGCACAATTTGTCGGAAGAGCAATGCAACTGACCCCGGAAGATGTGATTTGTTGCCCGCCACCC ATGTTCCATTGCTTTGGTCTGGTGTTAGGATTTCTTTCATCATTTTTCTACGGAAGTTCAATCGTCTTTCCATCT GACTATTTTGATGTCGCAAAGGTAGTCGACGCCATCATCGACGAAGACGCCACGGTTCTTCTCGGCGTTCCAACC ATGTACGTGGCCGAGTTAGAAGTGATGGCAAAGACAGGACAGAGACCCCGGCGACTACGGACAGGACTTGCATCT GGCTCGGCAGTCTCACAAAATCTCATGAACCAGCTGCGAGAGATTATGGGCGTCGAGAAAATGCTGATTGCATAC GGAATGACAGAGACCAGTCCTGTTAGCTTTATTACTTCCCTGGACGATAGCGATGAGAAAGGTACAACAACTGTC GGTCGAGTCATTCCGCATACGGCTGCAAAGGTCATTGATGAAAAGGGCAATACCTTGGCTCGAGGGCAGCGAGGA GAGCTCTGCACAAGTGGATTTGTGCTACAAAAGGGATACTGGAAGAATGAAGAGAAGACCAAGGAGGTGATGCGA AGAGACGAAAACGGCGTCTTATGGATGCACACTGGAGACGAAGCTATGATTGATTCGGATGGATATGCCCATATC ACCGGTCGGATCAAAGATCTTATTATTCGAGGTGGAGAGAATATCTTCCCGCGAGAAATTGAAGAACGATTGATG TCCCATGCATCAGTTTCCGAGGCTAGTGTAGTCGGTATCAAGGATGAGAGATACGGTGAGGTCGTTGGCTGTTTC TTGAAGGCATCGGTGCAGTTTCAGAGGCCCAGTATCCAAGAGCTCCAGCAGTTTGTCGGAGAGAGGCTCGGCCGA CACAAAGCCCCCAAACATGTGTTTTGGCTAGGAGAGAAAGGTGTTGGTGATGACTTCCCGAAGACTGGCAGTGGT AAGCATCAAAAACACATGATGCGGGACATTGGAAATCGGTTGGTGGGTATGTTCAAGGCGAAACTTTAG |
| Gene | >Pro_DTO377G3_2|g3320.t1 ATGGATTCCAACCTCGCACTTGTCTATGGCCCTACAGAGCCCCAGCTATGTCTCAAGACTATGGGCGCTCTCATC GAGGACCAGGCAGCCCAATTTGGTGACCGTCCTGCCGTTGTCTTTCCATGGCAGTCCGTCCGGCTGTCATATCGC CAACTGGCGGACCGGAGCAAAGCCCTAGCTGGAGAGATGCTTGAAATGGGACTGCACCATGGGGACTGTGTGGGT ATTTTGGCAGGCAACTGCTACCAATATGTTGAAGTTTTCCTTGCTGGTGCTCGAATCGGATGTCCTGTTGTTGTG CTGAACAATACATACACGCCTGCAGAGCTTGAAAATGCCGTCCTAAGGAGTTGTAAGTCTGCTATGAGGGTTTTC TTTTTAAAAGGGCAACAGCTAATATAGTAACAGCTTGCAAGGTTGTCTTCCATGCTACCAGCATCGGCTCTCGGG ACCTGACAGGTCATATCAGAATACTTCAAGGGACACAATATCCAAATCCAGCACTCCCCGATCTCCGCCGGATTA TCTCACTCGGACTTGGAGAATTCCGCACTGGAGCTATTGAGGTTCAGCTCTATGACACGGTTACTTCGAATAGTC CTTCTGTGTCTATAAACAATGCGACACTCGAGCACGCAGAGAGACAGGTTACTCCCCAAGATGTGGTTAACTTGC AATTTACTTCTGGTAAGTGACAACGAAAATCCAGATTTCAAACTGAATATTCACATATTTCAAGGAACCACGGGG TCTCCGAAAGCTGCTATGCTCACACATACGTAAGTCCGTGAAATTGGTAACTACTTGGAGCATGTAAATTAATCT AACCTATAGGAACCTCATCAACAATGCACAATTTGTCGGAAGAGCAATGCAACTGACCCCGGAAGATGTGATTTG TTGCCCGCCACCCATGTTCCATTGCTTTGGTCTGGTGTTAGGATTTCTTTCATCATTTTTCTACGGAAGTTCAAT CGTCTTTCCATCTGACTATTTTGATGTCGCAAAGGTAGTCGACGCCATCATCGACGAAGACGCCACGGTTCTTCT CGGCGTTCCAACCATGTACGTGGCCGAGTTAGAAGTGATGGCAAAGACAGGACAGAGACCCCGGCGACTACGGAC AGGACTTGCATCTGGCTCGGCAGTCTCACAAAATCTCATGAACCAGCTGCGAGAGATTATGGGCGTCGAGAAAAT GCTGATTGCATACGGAATGACAGAGACCAGTCCTGTTAGCTTTATTACTTCCCTGGACGATAGCGATGAGAAAGG TACAACAACTGTCGGTCGAGTCATTCCGCATACGGCTGCAAAGGTCATTGATGAAAAGGGCAATACCTTGGCTCG AGGGCAGCGAGGAGAGCTCTGCACAAGTGGATTTGTGCTACAAAAGGGATACTGGAAGAATGAAGAGAAGACCAA GGAGGTGATGCGAAGAGACGAAAACGGCGTCTTATGGATGCACACTGGAGACGAAGCTATGATTGATTCGGATGG ATATGCCCATATCACCGGTCGGATCAAAGATCTTATTATTCGAGGTACGTTCAATTCTCTGATACAAATCCCCAA ACCCGCTCCTACTGATGTTTGCTGCCAACAGGTGGAGAGAATATCTTCCCGCGAGAAATTGAAGAACGATTGATG TCCCATGCATCAGTTTCCGAGGCTAGTGTAGTCGGTATCAAGGATGAGAGATACGGTGAGGTCGTTGGCTGTTTC TTGAAGGCATCGGTGCAGTTTCAGAGGCCCAGTATCCAAGAGCTCCAGCAGTTTGTCGGAGAGAGGCTCGGCCGA CACAAAGCCCCCAAACATGTGTTTTGGCTAGGAGAGAAAGGTGTTGGTGATGACTTCCCGAAGACTGGCAGTGGT AAGCATCAAAAACACATGATGCGGGACATTGGAAATCGGTTGGTGGGTATGTTCAAGGCGAAACTTTAG |