© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3319.t1 |
| Gene name | |
| Location | scaffold_05:335937..337788 |
| Strand | - |
| Gene length (bp) | 1851 |
| Transcript length (bp) | 1794 |
| Coding sequence length (bp) | 1794 |
| Protein length (aa) | 598 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00682 | HMGL-like | HMGL-like | 1.6E-44 | 5 | 280 |
| PF00378 | ECH_1 | Enoyl-CoA hydratase/isomerase | 1.8E-43 | 340 | 587 |
| PF16113 | ECH_2 | Enoyl-CoA hydratase/isomerase | 1.9E-22 | 342 | 513 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.24 | 0.57 | 3.91 |
| 5d_25C | Five days - 25 degrees Celsius | 1.28 | 0.17 | 2.40 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.47 | 0.19 | 2.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.61 | 0.00 | 1.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.56 | 0.30 | 2.82 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.61 | 0.00 | 1.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.248951 | no |
| 3d_25C | 7d_25C | 0.408515 | no |
| 3d_25C | 7d_15C | 0.461387 | no |
| 3d_25C | 7d_30C | 0.010735 | yes |
| 3d_25C | 10d_25C | 0.011062 | yes |
| 5d_25C | 7d_25C | 0.847398 | no |
| 5d_25C | 7d_15C | 0.762689 | no |
| 5d_25C | 7d_30C | 0.178272 | no |
| 5d_25C | 10d_25C | 0.184750 | no |
| 7d_25C | 7d_15C | 0.936813 | no |
| 7d_25C | 7d_30C | 0.100042 | no |
| 7d_25C | 10d_25C | 0.103445 | no |
| 7d_15C | 7d_30C | 0.069586 | no |
| 7d_15C | 10d_25C | 0.071362 | no |
| 7d_30C | 10d_25C | 1.000000 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3319.t1 MGPAVRIVEVGPRDGLQNIRDTIPTSIKLELIQRLQKTGLQAIELTSVVSPKAIPQLADCRQVLRNPDIKRLLDS SQLRLPVLVPNAKGLEIAIQHGVREIAVFISSTEGFSKANINCTVAQGIERATQVASLAIRSQIAARGYVSCIFA DPYDGPTPLPAVLRCVKALLDAGCYEVSLGDTLGVGSPSNVRELINYLTSNGIPPEKLAGHFHDTYGQAVANAWE AFNSGIRVFDSSVAGLGGCPFAPGAKGNVASEDLVYMFHNAGISTGIDLPKLVETGVWISKQLLKNNSSRAGTAL ATKLQLAAPSTQSKPRAPGLKWDLCNETQGLQIYRSGVNLKIVLNRPKNGNTLTATMISDLTSVISNASSDPLTS RIVITANGKFFCTGMDLGKGSTAVGEGGSSSDAQFTGLTRLFEAIDQCPKVTIAAVNGPAFGGGVGLAFSCDIRT FTQGANVTLSEVKLGLCAATISKYVIRELGVAFAREVMLSARAVTPGELKGLGIISEIASDQENLRVRVDELLIR LKAASPNASRMSKELVRLAWAHGGGDAQAAGIKGLFKEMMRSDADGAYGVKEFQAKRKVDWDAYVLGPKPKL* |
| Coding | >Pro_DTO377G3_2|g3319.t1 ATGGGTCCGGCTGTTCGAATCGTCGAAGTCGGCCCACGGGACGGCCTTCAGAACATCCGAGACACAATACCTACT TCAATTAAGTTGGAATTGATTCAACGGCTCCAGAAGACAGGACTACAAGCTATTGAGCTGACGTCAGTCGTCTCA CCGAAAGCCATTCCTCAACTGGCGGATTGTCGTCAGGTCTTGCGTAACCCGGACATCAAGAGACTCTTGGATAGC TCGCAACTTCGGCTTCCTGTTTTGGTTCCCAATGCTAAGGGACTCGAGATTGCCATACAGCACGGCGTTCGAGAG ATTGCTGTGTTCATCAGTTCTACAGAGGGATTTAGTAAAGCCAATATCAACTGCACTGTTGCGCAGGGAATTGAA CGGGCTACCCAAGTGGCATCCCTGGCTATACGTTCTCAAATCGCTGCGAGAGGCTATGTGTCCTGCATTTTCGCT GATCCGTATGACGGTCCAACTCCATTACCAGCAGTCCTCCGCTGTGTAAAGGCCCTCCTAGATGCCGGCTGCTAC GAGGTTAGCCTCGGGGATACCCTAGGCGTTGGCTCTCCTTCAAACGTGCGCGAGCTCATCAACTACCTGACCAGC AACGGTATCCCGCCAGAGAAGCTAGCAGGCCACTTCCACGACACTTATGGACAAGCCGTAGCAAACGCGTGGGAG GCCTTCAATAGCGGAATCCGAGTGTTCGACAGCAGTGTCGCCGGTCTGGGTGGATGTCCATTTGCACCAGGAGCA AAAGGAAATGTCGCCTCCGAGGATCTGGTTTACATGTTCCACAATGCGGGTATTTCAACAGGCATCGATCTCCCA AAGCTAGTCGAAACGGGTGTATGGATATCGAAACAACTTCTGAAGAACAACTCAAGTCGAGCCGGAACGGCTCTG GCAACCAAATTACAGCTGGCAGCCCCAAGCACACAATCCAAACCAAGAGCTCCCGGCCTCAAATGGGACCTTTGC AACGAAACACAGGGTTTACAGATCTACCGATCAGGCGTGAACTTGAAAATCGTCCTCAACAGGCCCAAGAACGGA AACACCCTGACAGCAACCATGATCTCGGATTTGACATCGGTGATCTCAAATGCCAGTTCTGATCCCTTAACCTCC CGAATCGTCATTACAGCCAATGGAAAATTCTTTTGCACGGGAATGGACCTCGGCAAGGGAAGCACAGCCGTTGGA GAAGGCGGATCGAGCAGCGACGCACAATTCACGGGTTTAACGCGACTCTTCGAGGCAATTGATCAATGTCCTAAA GTCACCATTGCGGCGGTGAATGGGCCTGCGTTTGGTGGTGGAGTTGGTTTAGCTTTCTCGTGTGATATACGGACA TTTACACAAGGAGCGAATGTCACGCTGAGCGAGGTGAAGCTAGGACTTTGTGCGGCAACGATATCCAAATATGTT ATTCGAGAATTGGGGGTTGCATTTGCACGAGAGGTGATGCTTTCTGCGAGAGCGGTTACTCCTGGTGAGTTGAAG GGGTTGGGAATTATTTCTGAGATTGCCTCGGACCAGGAGAATCTGCGGGTTAGAGTTGATGAGCTTTTGATTCGC CTTAAAGCTGCTTCGCCTAATGCTTCGCGGATGTCGAAGGAATTGGTTCGACTTGCCTGGGCGCATGGAGGAGGT GATGCACAAGCTGCTGGGATTAAAGGGCTATTTAAAGAGATGATGCGGTCTGATGCAGATGGAGCATATGGCGTG AAGGAATTCCAGGCGAAGAGGAAGGTAGATTGGGATGCCTATGTTCTAGGGCCGAAGCCCAAGCTGTAA |
| Transcript | >Pro_DTO377G3_2|g3319.t1 ATGGGTCCGGCTGTTCGAATCGTCGAAGTCGGCCCACGGGACGGCCTTCAGAACATCCGAGACACAATACCTACT TCAATTAAGTTGGAATTGATTCAACGGCTCCAGAAGACAGGACTACAAGCTATTGAGCTGACGTCAGTCGTCTCA CCGAAAGCCATTCCTCAACTGGCGGATTGTCGTCAGGTCTTGCGTAACCCGGACATCAAGAGACTCTTGGATAGC TCGCAACTTCGGCTTCCTGTTTTGGTTCCCAATGCTAAGGGACTCGAGATTGCCATACAGCACGGCGTTCGAGAG ATTGCTGTGTTCATCAGTTCTACAGAGGGATTTAGTAAAGCCAATATCAACTGCACTGTTGCGCAGGGAATTGAA CGGGCTACCCAAGTGGCATCCCTGGCTATACGTTCTCAAATCGCTGCGAGAGGCTATGTGTCCTGCATTTTCGCT GATCCGTATGACGGTCCAACTCCATTACCAGCAGTCCTCCGCTGTGTAAAGGCCCTCCTAGATGCCGGCTGCTAC GAGGTTAGCCTCGGGGATACCCTAGGCGTTGGCTCTCCTTCAAACGTGCGCGAGCTCATCAACTACCTGACCAGC AACGGTATCCCGCCAGAGAAGCTAGCAGGCCACTTCCACGACACTTATGGACAAGCCGTAGCAAACGCGTGGGAG GCCTTCAATAGCGGAATCCGAGTGTTCGACAGCAGTGTCGCCGGTCTGGGTGGATGTCCATTTGCACCAGGAGCA AAAGGAAATGTCGCCTCCGAGGATCTGGTTTACATGTTCCACAATGCGGGTATTTCAACAGGCATCGATCTCCCA AAGCTAGTCGAAACGGGTGTATGGATATCGAAACAACTTCTGAAGAACAACTCAAGTCGAGCCGGAACGGCTCTG GCAACCAAATTACAGCTGGCAGCCCCAAGCACACAATCCAAACCAAGAGCTCCCGGCCTCAAATGGGACCTTTGC AACGAAACACAGGGTTTACAGATCTACCGATCAGGCGTGAACTTGAAAATCGTCCTCAACAGGCCCAAGAACGGA AACACCCTGACAGCAACCATGATCTCGGATTTGACATCGGTGATCTCAAATGCCAGTTCTGATCCCTTAACCTCC CGAATCGTCATTACAGCCAATGGAAAATTCTTTTGCACGGGAATGGACCTCGGCAAGGGAAGCACAGCCGTTGGA GAAGGCGGATCGAGCAGCGACGCACAATTCACGGGTTTAACGCGACTCTTCGAGGCAATTGATCAATGTCCTAAA GTCACCATTGCGGCGGTGAATGGGCCTGCGTTTGGTGGTGGAGTTGGTTTAGCTTTCTCGTGTGATATACGGACA TTTACACAAGGAGCGAATGTCACGCTGAGCGAGGTGAAGCTAGGACTTTGTGCGGCAACGATATCCAAATATGTT ATTCGAGAATTGGGGGTTGCATTTGCACGAGAGGTGATGCTTTCTGCGAGAGCGGTTACTCCTGGTGAGTTGAAG GGGTTGGGAATTATTTCTGAGATTGCCTCGGACCAGGAGAATCTGCGGGTTAGAGTTGATGAGCTTTTGATTCGC CTTAAAGCTGCTTCGCCTAATGCTTCGCGGATGTCGAAGGAATTGGTTCGACTTGCCTGGGCGCATGGAGGAGGT GATGCACAAGCTGCTGGGATTAAAGGGCTATTTAAAGAGATGATGCGGTCTGATGCAGATGGAGCATATGGCGTG AAGGAATTCCAGGCGAAGAGGAAGGTAGATTGGGATGCCTATGTTCTAGGGCCGAAGCCCAAGCTGTAA |
| Gene | >Pro_DTO377G3_2|g3319.t1 ATGGGTCCGGCTGTTCGAATCGTCGAAGTCGGCCCACGGGACGGCCTTCAGAACATCCGAGACACAATACCTACT TCAATTAAGTTGGAATTGATTCAACGGCTCCAGAAGACAGGACTACAAGCTATTGAGCTGACGTCAGTCGTCTCA CCGAAAGCCATTCCTCAACTGGCGGATTGTCGTCAGGTCTTGCGTAACCCGGACATCAAGAGACTCTTGGATAGC TCGCAACTTCGGCTTCCTGTTTTGGTTCCCAATGCTAAGGGACTCGAGATTGCCATACAGCACGGCGTTCGAGAG ATTGCTGTGTTCATCAGTTCTACAGAGGGATTTAGTAAAGCCAATATCAACTGCACTGTTGCGCAGGGAATTGAA CGGGCTACCCAAGTGGCATCCCTGGCTATACGTTCTCAAATCGCTGCGAGAGGGTAAGAAAATGGGTCCATTCCC TTATATCACAATCCAATGGCAACTAACCTAAACAGCTATGTGTCCTGCATTTTCGCTGATCCGTATGACGGTCCA ACTCCATTACCAGCAGTCCTCCGCTGTGTAAAGGCCCTCCTAGATGCCGGCTGCTACGAGGTTAGCCTCGGGGAT ACCCTAGGCGTTGGCTCTCCTTCAAACGTGCGCGAGCTCATCAACTACCTGACCAGCAACGGTATCCCGCCAGAG AAGCTAGCAGGCCACTTCCACGACACTTATGGACAAGCCGTAGCAAACGCGTGGGAGGCCTTCAATAGCGGAATC CGAGTGTTCGACAGCAGTGTCGCCGGTCTGGGTGGATGTCCATTTGCACCAGGAGCAAAAGGAAATGTCGCCTCC GAGGATCTGGTTTACATGTTCCACAATGCGGGTATTTCAACAGGCATCGATCTCCCAAAGCTAGTCGAAACGGGT GTATGGATATCGAAACAACTTCTGAAGAACAACTCAAGTCGAGCCGGAACGGCTCTGGCAACCAAATTACAGCTG GCAGCCCCAAGCACACAATCCAAACCAAGAGCTCCCGGCCTCAAATGGGACCTTTGCAACGAAACACAGGGTTTA CAGATCTACCGATCAGGCGTGAACTTGAAAATCGTCCTCAACAGGCCCAAGAACGGAAACACCCTGACAGCAACC ATGATCTCGGATTTGACATCGGTGATCTCAAATGCCAGTTCTGATCCCTTAACCTCCCGAATCGTCATTACAGCC AATGGAAAATTCTTTTGCACGGGAATGGACCTCGGCAAGGGAAGCACAGCCGTTGGAGAAGGCGGATCGAGCAGC GACGCACAATTCACGGGTTTAACGCGACTCTTCGAGGCAATTGATCAATGTCCTAAAGTCACCATTGCGGCGGTG AATGGGCCTGCGTTTGGTGGTGGAGTTGGTTTAGCTTTCTCGTGTGATATACGGACATTTACACAAGGAGCGAAT GTCACGCTGAGCGAGGTGAAGCTAGGACTTTGTGCGGCAACGATATCCAAATATGTTATTCGAGAATTGGGGGTT GCATTTGCACGAGAGGTGATGCTTTCTGCGAGAGCGGTTACTCCTGGTGAGTTGAAGGGGTTGGGAATTATTTCT GAGATTGCCTCGGACCAGGAGAATCTGCGGGTTAGAGTTGATGAGCTTTTGATTCGCCTTAAAGCTGCTTCGCCT AATGCTTCGCGGATGTCGAAGGAATTGGTTCGACTTGCCTGGGCGCATGGAGGAGGTGATGCACAAGCTGCTGGG ATTAAAGGGCTATTTAAAGAGATGATGCGGTCTGATGCAGATGGAGCATATGGCGTGAAGGAATTCCAGGCGAAG AGGAAGGTAGATTGGGATGCCTATGTTCTAGGGCCGAAGCCCAAGCTGTAA |