© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3314.t1 |
| Gene name | |
| Location | scaffold_05:324894..327367 |
| Strand | + |
| Gene length (bp) | 2473 |
| Transcript length (bp) | 2409 |
| Coding sequence length (bp) | 2409 |
| Protein length (aa) | 803 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02786 | CPSase_L_D2 | Carbamoyl-phosphate synthase L chain, ATP binding domain | 9.8E-69 | 152 | 361 |
| PF00289 | Biotin_carb_N | Biotin carboxylase, N-terminal domain | 2.0E-41 | 36 | 146 |
| PF02785 | Biotin_carb_C | Biotin carboxylase C-terminal domain | 3.3E-30 | 377 | 487 |
| PF00364 | Biotin_lipoyl | Biotin-requiring enzyme | 2.0E-11 | 736 | 801 |
| PF07478 | Dala_Dala_lig_C | D-ala D-ala ligase C-terminus | 1.3E-09 | 178 | 330 |
| PF02222 | ATP-grasp | ATP-grasp domain | 1.7E-07 | 177 | 331 |
| PF02655 | ATP-grasp_3 | ATP-grasp domain | 3.5E-06 | 150 | 333 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008716 | D-alanine-D-alanine ligase activity | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0016879 | ligase activity, forming carbon-nitrogen bonds | No |
| GO:0043167 | ion binding | No |
| GO:0016881 | acid-amino acid ligase activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0016874 | ligase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0043169 | cation binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| Orthofinder run ID | 2 |
| Orthogroup | 3103 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3314.t1 MAVTFTQDPKGTDVSVLRKPLFVAEPPLGKDGRPIIRKVLIANRGEIACRIIQTCRKLNITSVAVYVDEDASSLH VRDADEAINIGSIDRSARNPFLDIELLVQTALSTCAQAIHPGYGYLSENADFAQRVHDAGLIFIGPSPSAMSTLG DKRSSKDYLRAHAPEVPLIPGFSGSSQDAEALGRVATEIGFPVMLKASAGGGGKGMRIVREAGQLKVELERAQSE ARRSFGSDDCILEKFIESSKHVEIQIMGDSHGHVVSFLDRDCSVQRRHQKVIEETPCAFLTEATRKKMSETAVRV AKLIGYENAGTVEFVVDIKTNQFYFLEVNARLQVEHPITEEVTGVDLVSLQLFVAAGGSLRSLPTLGNVTQNGHA IECRLCAENPEREFFPEHGKIHLWLPASGPLAPGRDIRYETAIQTGSSVSIYFDSMIAKLVVWAPTRALAIEKMA QVLGQTACVGVKTNQLFMRSCLLNPAFRDPSYTTAFIPSHLNELLQPPSVQGLPEFKTIASILPSLVVRRLPDYA TALSRPKPLRNVRMQFRNQRFDPVNIHCDVTTTVNWPSQTGQEVDSAPENAVMCIWKASPAGVSSGVEDVYLFPI PNGKTTTDEEVSAAAEISAQYNEISQALRTGKATSSPAYQVQVISWVPAHGNPALPDSWLTSTIEISVNGSKLTA HVAIPSTRAHAFAGQVDCGQRIYCHFPSIGTHVEFKRDTLLSFAESNRSAAKANKGSEQKTVAAPMPCKVLSVLK KNGDEVKSGDSVMVIESMKMEVNISVAASGKFQTDWKTGDAVEEGKILCSIV* |
| Coding | >Pro_DTO377G3_2|g3314.t1 ATGGCTGTTACTTTCACCCAAGATCCGAAGGGCACTGATGTGTCAGTTCTTCGCAAGCCATTATTTGTCGCAGAG CCACCCTTGGGCAAAGATGGAAGACCTATTATACGAAAAGTCTTGATTGCCAACCGCGGGGAAATCGCCTGTCGC ATTATCCAGACATGCCGGAAATTGAATATCACATCCGTGGCGGTCTATGTCGACGAAGATGCATCTTCCCTCCAT GTCCGTGACGCAGATGAAGCCATCAACATTGGCAGCATTGACCGCAGTGCTCGCAACCCGTTTCTTGACATCGAA CTACTAGTTCAAACAGCTCTTTCAACGTGTGCTCAAGCTATCCACCCGGGATATGGCTATCTCAGCGAAAACGCA GATTTTGCCCAGCGCGTCCATGACGCAGGTCTCATCTTCATCGGCCCCAGCCCCAGCGCCATGTCTACTCTCGGC GACAAACGGTCATCAAAGGATTATCTGCGCGCTCATGCCCCTGAGGTCCCCCTAATCCCTGGATTCTCGGGATCC AGCCAAGATGCCGAGGCTTTGGGTAGAGTGGCTACGGAGATTGGATTCCCGGTCATGCTCAAGGCTTCCGCTGGT GGCGGTGGAAAGGGTATGCGGATTGTCCGCGAGGCGGGACAGCTTAAGGTTGAACTGGAAAGAGCTCAATCCGAG GCTCGTCGGTCATTTGGTTCAGATGATTGTATCTTGGAGAAATTCATTGAGAGCAGCAAACATGTTGAGATTCAG ATCATGGGTGACTCGCATGGACATGTGGTTTCATTTTTGGATAGGGATTGCTCTGTGCAACGAAGGCATCAGAAG GTCATTGAAGAAACCCCGTGTGCTTTCCTCACAGAAGCAACTCGAAAAAAGATGAGTGAAACTGCTGTCCGGGTA GCCAAGCTTATTGGATATGAAAATGCTGGTACGGTGGAGTTTGTGGTCGATATCAAGACGAACCAATTCTACTTC CTAGAAGTCAATGCGCGGCTACAAGTTGAGCATCCGATCACAGAAGAAGTCACAGGGGTTGATCTTGTTTCTTTA CAACTGTTCGTTGCAGCTGGAGGCAGCCTGAGAAGCCTTCCAACACTGGGGAATGTCACCCAGAATGGACATGCA ATCGAGTGCCGGCTGTGTGCTGAGAACCCCGAGAGGGAATTCTTCCCAGAACATGGCAAAATTCACCTCTGGCTA CCAGCAAGTGGGCCTTTAGCCCCGGGCCGCGATATCCGCTATGAAACAGCAATCCAAACGGGATCATCAGTATCT ATCTATTTCGACTCAATGATCGCCAAGCTTGTCGTTTGGGCTCCAACAAGAGCGCTTGCTATTGAGAAAATGGCT CAGGTTCTTGGGCAGACCGCTTGCGTTGGAGTCAAGACAAATCAACTTTTCATGCGATCATGTTTATTGAACCCG GCGTTCCGTGATCCTAGCTATACAACTGCGTTCATTCCATCTCACCTGAATGAGCTTCTTCAGCCTCCTTCGGTC CAGGGACTGCCTGAGTTCAAAACCATCGCCTCAATTCTTCCAAGCTTGGTAGTCCGACGACTTCCAGATTACGCC ACAGCCTTGTCACGACCCAAACCTCTCCGGAATGTCCGCATGCAATTCCGAAACCAAAGGTTCGACCCAGTCAAT ATCCATTGTGATGTTACAACTACGGTCAATTGGCCTAGCCAGACTGGACAGGAGGTTGATTCGGCACCTGAAAAC GCTGTGATGTGCATTTGGAAAGCAAGCCCAGCCGGGGTTTCATCCGGCGTTGAGGATGTATATCTCTTCCCAATC CCCAATGGAAAGACCACCACCGATGAAGAGGTGTCAGCAGCAGCAGAAATCTCCGCTCAATATAATGAAATCAGT CAAGCACTACGCACCGGCAAAGCAACGTCTTCTCCGGCATACCAAGTCCAAGTTATCTCATGGGTCCCTGCACAC GGCAACCCAGCTCTACCCGATTCCTGGCTTACATCCACCATTGAGATTTCAGTGAATGGATCAAAGCTCACTGCT CATGTAGCTATCCCTTCAACACGGGCCCATGCCTTCGCGGGACAGGTCGATTGTGGTCAACGGATTTATTGTCAT TTCCCCTCTATCGGAACTCATGTTGAATTCAAACGCGATACTCTGCTCTCATTTGCGGAGAGTAATCGATCAGCT GCAAAGGCAAATAAGGGTTCAGAGCAAAAGACTGTTGCAGCTCCCATGCCGTGCAAAGTTCTTTCAGTCTTGAAA AAGAATGGAGACGAAGTCAAGTCTGGCGATTCGGTTATGGTTATTGAGAGTATGAAGATGGAAGTCAATATTTCA GTCGCGGCTTCAGGGAAGTTTCAAACAGATTGGAAGACCGGGGATGCGGTGGAGGAAGGAAAGATTCTTTGTTCG ATTGTTTAG |
| Transcript | >Pro_DTO377G3_2|g3314.t1 ATGGCTGTTACTTTCACCCAAGATCCGAAGGGCACTGATGTGTCAGTTCTTCGCAAGCCATTATTTGTCGCAGAG CCACCCTTGGGCAAAGATGGAAGACCTATTATACGAAAAGTCTTGATTGCCAACCGCGGGGAAATCGCCTGTCGC ATTATCCAGACATGCCGGAAATTGAATATCACATCCGTGGCGGTCTATGTCGACGAAGATGCATCTTCCCTCCAT GTCCGTGACGCAGATGAAGCCATCAACATTGGCAGCATTGACCGCAGTGCTCGCAACCCGTTTCTTGACATCGAA CTACTAGTTCAAACAGCTCTTTCAACGTGTGCTCAAGCTATCCACCCGGGATATGGCTATCTCAGCGAAAACGCA GATTTTGCCCAGCGCGTCCATGACGCAGGTCTCATCTTCATCGGCCCCAGCCCCAGCGCCATGTCTACTCTCGGC GACAAACGGTCATCAAAGGATTATCTGCGCGCTCATGCCCCTGAGGTCCCCCTAATCCCTGGATTCTCGGGATCC AGCCAAGATGCCGAGGCTTTGGGTAGAGTGGCTACGGAGATTGGATTCCCGGTCATGCTCAAGGCTTCCGCTGGT GGCGGTGGAAAGGGTATGCGGATTGTCCGCGAGGCGGGACAGCTTAAGGTTGAACTGGAAAGAGCTCAATCCGAG GCTCGTCGGTCATTTGGTTCAGATGATTGTATCTTGGAGAAATTCATTGAGAGCAGCAAACATGTTGAGATTCAG ATCATGGGTGACTCGCATGGACATGTGGTTTCATTTTTGGATAGGGATTGCTCTGTGCAACGAAGGCATCAGAAG GTCATTGAAGAAACCCCGTGTGCTTTCCTCACAGAAGCAACTCGAAAAAAGATGAGTGAAACTGCTGTCCGGGTA GCCAAGCTTATTGGATATGAAAATGCTGGTACGGTGGAGTTTGTGGTCGATATCAAGACGAACCAATTCTACTTC CTAGAAGTCAATGCGCGGCTACAAGTTGAGCATCCGATCACAGAAGAAGTCACAGGGGTTGATCTTGTTTCTTTA CAACTGTTCGTTGCAGCTGGAGGCAGCCTGAGAAGCCTTCCAACACTGGGGAATGTCACCCAGAATGGACATGCA ATCGAGTGCCGGCTGTGTGCTGAGAACCCCGAGAGGGAATTCTTCCCAGAACATGGCAAAATTCACCTCTGGCTA CCAGCAAGTGGGCCTTTAGCCCCGGGCCGCGATATCCGCTATGAAACAGCAATCCAAACGGGATCATCAGTATCT ATCTATTTCGACTCAATGATCGCCAAGCTTGTCGTTTGGGCTCCAACAAGAGCGCTTGCTATTGAGAAAATGGCT CAGGTTCTTGGGCAGACCGCTTGCGTTGGAGTCAAGACAAATCAACTTTTCATGCGATCATGTTTATTGAACCCG GCGTTCCGTGATCCTAGCTATACAACTGCGTTCATTCCATCTCACCTGAATGAGCTTCTTCAGCCTCCTTCGGTC CAGGGACTGCCTGAGTTCAAAACCATCGCCTCAATTCTTCCAAGCTTGGTAGTCCGACGACTTCCAGATTACGCC ACAGCCTTGTCACGACCCAAACCTCTCCGGAATGTCCGCATGCAATTCCGAAACCAAAGGTTCGACCCAGTCAAT ATCCATTGTGATGTTACAACTACGGTCAATTGGCCTAGCCAGACTGGACAGGAGGTTGATTCGGCACCTGAAAAC GCTGTGATGTGCATTTGGAAAGCAAGCCCAGCCGGGGTTTCATCCGGCGTTGAGGATGTATATCTCTTCCCAATC CCCAATGGAAAGACCACCACCGATGAAGAGGTGTCAGCAGCAGCAGAAATCTCCGCTCAATATAATGAAATCAGT CAAGCACTACGCACCGGCAAAGCAACGTCTTCTCCGGCATACCAAGTCCAAGTTATCTCATGGGTCCCTGCACAC GGCAACCCAGCTCTACCCGATTCCTGGCTTACATCCACCATTGAGATTTCAGTGAATGGATCAAAGCTCACTGCT CATGTAGCTATCCCTTCAACACGGGCCCATGCCTTCGCGGGACAGGTCGATTGTGGTCAACGGATTTATTGTCAT TTCCCCTCTATCGGAACTCATGTTGAATTCAAACGCGATACTCTGCTCTCATTTGCGGAGAGTAATCGATCAGCT GCAAAGGCAAATAAGGGTTCAGAGCAAAAGACTGTTGCAGCTCCCATGCCGTGCAAAGTTCTTTCAGTCTTGAAA AAGAATGGAGACGAAGTCAAGTCTGGCGATTCGGTTATGGTTATTGAGAGTATGAAGATGGAAGTCAATATTTCA GTCGCGGCTTCAGGGAAGTTTCAAACAGATTGGAAGACCGGGGATGCGGTGGAGGAAGGAAAGATTCTTTGTTCG ATTGTTTAG |
| Gene | >Pro_DTO377G3_2|g3314.t1 ATGGCTGTTACTTTCACCCAAGATCCGAAGGGCACTGATGTGTCAGTTCTTCGCAAGCCATTATTTGTCGCAGAG CCACCCTTGGGCAAAGATGGAAGACCTATTATACGAAAAGTCTTGATTGCCAACCGCGGGGAAATCGCCTGTCGC ATTATCCAGACATGCCGGAAATTGAATATCACATCCGTGGCGGTCTATGTCGACGAGTGAGTGCTCAGAAATTGT GCTACCAACATATCATCGAGGACAATCGCTAAAATGAGTACCCAGAGATGCATCTTCCCTCCATGTCCGTGACGC AGATGAAGCCATCAACATTGGCAGCATTGACCGCAGTGCTCGCAACCCGTTTCTTGACATCGAACTACTAGTTCA AACAGCTCTTTCAACGTGTGCTCAAGCTATCCACCCGGGATATGGCTATCTCAGCGAAAACGCAGATTTTGCCCA GCGCGTCCATGACGCAGGTCTCATCTTCATCGGCCCCAGCCCCAGCGCCATGTCTACTCTCGGCGACAAACGGTC ATCAAAGGATTATCTGCGCGCTCATGCCCCTGAGGTCCCCCTAATCCCTGGATTCTCGGGATCCAGCCAAGATGC CGAGGCTTTGGGTAGAGTGGCTACGGAGATTGGATTCCCGGTCATGCTCAAGGCTTCCGCTGGTGGCGGTGGAAA GGGTATGCGGATTGTCCGCGAGGCGGGACAGCTTAAGGTTGAACTGGAAAGAGCTCAATCCGAGGCTCGTCGGTC ATTTGGTTCAGATGATTGTATCTTGGAGAAATTCATTGAGAGCAGCAAACATGTTGAGATTCAGATCATGGGTGA CTCGCATGGACATGTGGTTTCATTTTTGGATAGGGATTGCTCTGTGCAACGAAGGCATCAGAAGGTCATTGAAGA AACCCCGTGTGCTTTCCTCACAGAAGCAACTCGAAAAAAGATGAGTGAAACTGCTGTCCGGGTAGCCAAGCTTAT TGGATATGAAAATGCTGGTACGGTGGAGTTTGTGGTCGATATCAAGACGAACCAATTCTACTTCCTAGAAGTCAA TGCGCGGCTACAAGTTGAGCATCCGATCACAGAAGAAGTCACAGGGGTTGATCTTGTTTCTTTACAACTGTTCGT TGCAGCTGGAGGCAGCCTGAGAAGCCTTCCAACACTGGGGAATGTCACCCAGAATGGACATGCAATCGAGTGCCG GCTGTGTGCTGAGAACCCCGAGAGGGAATTCTTCCCAGAACATGGCAAAATTCACCTCTGGCTACCAGCAAGTGG GCCTTTAGCCCCGGGCCGCGATATCCGCTATGAAACAGCAATCCAAACGGGATCATCAGTATCTATCTATTTCGA CTCAATGATCGCCAAGCTTGTCGTTTGGGCTCCAACAAGAGCGCTTGCTATTGAGAAAATGGCTCAGGTTCTTGG GCAGACCGCTTGCGTTGGAGTCAAGACAAATCAACTTTTCATGCGATCATGTTTATTGAACCCGGCGTTCCGTGA TCCTAGCTATACAACTGCGTTCATTCCATCTCACCTGAATGAGCTTCTTCAGCCTCCTTCGGTCCAGGGACTGCC TGAGTTCAAAACCATCGCCTCAATTCTTCCAAGCTTGGTAGTCCGACGACTTCCAGATTACGCCACAGCCTTGTC ACGACCCAAACCTCTCCGGAATGTCCGCATGCAATTCCGAAACCAAAGGTTCGACCCAGTCAATATCCATTGTGA TGTTACAACTACGGTCAATTGGCCTAGCCAGACTGGACAGGAGGTTGATTCGGCACCTGAAAACGCTGTGATGTG CATTTGGAAAGCAAGCCCAGCCGGGGTTTCATCCGGCGTTGAGGATGTATATCTCTTCCCAATCCCCAATGGAAA GACCACCACCGATGAAGAGGTGTCAGCAGCAGCAGAAATCTCCGCTCAATATAATGAAATCAGTCAAGCACTACG CACCGGCAAAGCAACGTCTTCTCCGGCATACCAAGTCCAAGTTATCTCATGGGTCCCTGCACACGGCAACCCAGC TCTACCCGATTCCTGGCTTACATCCACCATTGAGATTTCAGTGAATGGATCAAAGCTCACTGCTCATGTAGCTAT CCCTTCAACACGGGCCCATGCCTTCGCGGGACAGGTCGATTGTGGTCAACGGATTTATTGTCATTTCCCCTCTAT CGGAACTCATGTTGAATTCAAACGCGATACTCTGCTCTCATTTGCGGAGAGTAATCGATCAGCTGCAAAGGCAAA TAAGGGTTCAGAGCAAAAGACTGTTGCAGCTCCCATGCCGTGCAAAGTTCTTTCAGTCTTGAAAAAGAATGGAGA CGAAGTCAAGTCTGGCGATTCGGTTATGGTTATTGAGAGTATGAAGATGGAAGTCAATATTTCAGTCGCGGCTTC AGGGAAGTTTCAAACAGATTGGAAGACCGGGGATGCGGTGGAGGAAGGAAAGATTCTTTGTTCGATTGTTTAG |