© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3310.t1 |
| Gene name | |
| Location | scaffold_05:314958..315868 |
| Strand | - |
| Gene length (bp) | 910 |
| Transcript length (bp) | 675 |
| Coding sequence length (bp) | 675 |
| Protein length (aa) | 225 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01184 | Gpr1_Fun34_YaaH | GPR1/FUN34/yaaH family | 2.4E-25 | 46 | 208 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 53 | 75 | 22 |
| 2 | 79 | 101 | 22 |
| 3 | 103 | 125 | 22 |
| 4 | 150 | 172 | 22 |
| 5 | 179 | 201 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3310.t1 MSSDPDANDNVDMIEHVRTNASIAIPLEVFERRYLSLNIPNANWYKRLGNPTPLGLVGFLMAASPFACALLGWGG AGGGGVATIGFSYFFGGVLQLIAAVLEFILGSTFPSVVFGSFGAFWVALGATQTPNFNAQAFFENGENGVDMSEY YASFAFGLIFLAVLVSIYTICATRLNIVFFCLFFTLTFSVICLAASYWCMAQGKALAGERLTKVFASRKRPEIP* |
| Coding | >Pro_DTO377G3_2|g3310.t1 ATGAGCAGTGACCCAGACGCGAATGACAACGTCGACATGATCGAGCATGTCCGCACGAATGCCAGCATCGCCATT CCTCTTGAGGTTTTTGAGAGGCGATACCTTAGCCTCAATATTCCAAATGCAAACTGGTATAAGCGTCTCGGTAAC CCAACACCTCTCGGACTTGTTGGATTTTTAATGGCAGCGAGCCCTTTCGCATGTGCTCTCTTGGGCTGGGGCGGA GCAGGAGGCGGAGGTGTTGCGACTATAGGATTCTCGTATTTCTTTGGCGGCGTACTTCAACTTATCGCGGCAGTT CTCGAGTTTATCCTGGGAAGCACTTTTCCTTCCGTCGTATTTGGCTCTTTTGGGGCATTCTGGGTGGCTCTCGGC GCCACACAAACCCCTAATTTCAACGCCCAGGCTTTTTTCGAAAATGGTGAAAATGGTGTGGATATGAGCGAATAT TACGCTAGCTTTGCATTTGGGCTGATCTTCCTGGCTGTCCTCGTTTCCATATACACGATTTGCGCAACCCGCCTT AACATCGTCTTTTTTTGTCTTTTTTTCACCCTCACCTTTTCTGTGATATGTCTTGCCGCGTCATACTGGTGTATG GCACAGGGGAAGGCTTTAGCTGGAGAACGGCTGACAAAGGTATTTGCATCCCGAAAGAGACCCGAGATTCCTTGA |
| Transcript | >Pro_DTO377G3_2|g3310.t1 ATGAGCAGTGACCCAGACGCGAATGACAACGTCGACATGATCGAGCATGTCCGCACGAATGCCAGCATCGCCATT CCTCTTGAGGTTTTTGAGAGGCGATACCTTAGCCTCAATATTCCAAATGCAAACTGGTATAAGCGTCTCGGTAAC CCAACACCTCTCGGACTTGTTGGATTTTTAATGGCAGCGAGCCCTTTCGCATGTGCTCTCTTGGGCTGGGGCGGA GCAGGAGGCGGAGGTGTTGCGACTATAGGATTCTCGTATTTCTTTGGCGGCGTACTTCAACTTATCGCGGCAGTT CTCGAGTTTATCCTGGGAAGCACTTTTCCTTCCGTCGTATTTGGCTCTTTTGGGGCATTCTGGGTGGCTCTCGGC GCCACACAAACCCCTAATTTCAACGCCCAGGCTTTTTTCGAAAATGGTGAAAATGGTGTGGATATGAGCGAATAT TACGCTAGCTTTGCATTTGGGCTGATCTTCCTGGCTGTCCTCGTTTCCATATACACGATTTGCGCAACCCGCCTT AACATCGTCTTTTTTTGTCTTTTTTTCACCCTCACCTTTTCTGTGATATGTCTTGCCGCGTCATACTGGTGTATG GCACAGGGGAAGGCTTTAGCTGGAGAACGGCTGACAAAGGTATTTGCATCCCGAAAGAGACCCGAGATTCCTTGA |
| Gene | >Pro_DTO377G3_2|g3310.t1 ATGAGCAGTGACCCAGACGCGAATGACAACGTCGACATGATCGAGCATGTCCGCACGAATGCCAGCATCGCCATT CCTCTTGAGGTTTTTGAGAGGCGATACCTTAGCCTCAATATTCCAAATGCAAACTGGTATAAGCGTCTCGGTAAC CCAACACCTCTGTGAGTTTTGGGGTCTCTGATTGTTTTTTCTCGAGCTCCTATCTGATAGTGATATAGCGGACTT GTTGGATTTTTAATGGCAGCGAGCCCTTTCGCATGTGCTCTCTTGGGCTGGGGCGGAGCAGGAGGCGGAGGTGTT GCGACTATGTAAGCGAGACCAAAGAGTGAATTCCTGATGATTATTTCAATCTGACTGGCTCTAACAGAGGATTCT CGTATTTCTTTGGCGGCGTACTTCAACTTATCGCGGCAGTTCTCGAGTTTATCCTGGGAAGCACTTTTCCTTCCG TCGTATTTGGCTCTTTTGGTAAGTTACACGGAGATCATCACAGAGGTACTTGAAAAAAATTGACATGTCATTATC AGGGGCATTCTGGGTGGCTCTCGGCGCCACACAAACCCCTAATTTCAACGCCCAGGCTTTTTTCGAAAATGGTGA AAATGGTGTGGATATGAGCGAATATTACGCTAGCTTTGGTAGGTGTTACCCAGTGGAATGGACGGTAGGTCGAAT TGACCATGGCTAATTTACTCCAGCATTTGGGCTGATCTTCCTGGCTGTCCTCGTTTCCATATACACGATTTGCGC AACCCGCCTTAACATCGTCTTTTTTTGTCTTTTTTTCACCCTCACCTTTTCTGTGATATGTCTTGCCGCGTCATA CTGGTGTATGGCACAGGGGAAGGCTTTAGCTGGAGAACGGCTGACAAAGGTATTTGCATCCCGAAAGAGACCCGA GATTCCTTGA |