© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g331.t1 |
| Gene name | |
| Location | scaffold_01:838944..839896 |
| Strand | + |
| Gene length (bp) | 952 |
| Transcript length (bp) | 810 |
| Coding sequence length (bp) | 810 |
| Protein length (aa) | 270 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14880 | COX14 | Cytochrome oxidase c assembly | 4.4E-19 | 80 | 137 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 96 | 118 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 77.96 | 44.99 | 110.93 |
| 5d_25C | Five days - 25 degrees Celsius | 76.80 | 43.89 | 109.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 89.44 | 51.84 | 127.03 |
| 10d_25C | Ten days - 25 degrees Celsius | 90.43 | 53.00 | 127.86 |
| 7d_15C | Seven days - 15 degrees Celsius | 66.20 | 36.97 | 95.43 |
| 7d_30C | Seven days - 30 degrees Celsius | 80.00 | 46.09 | 113.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.970109 | no |
| 3d_25C | 7d_25C | 0.639409 | no |
| 3d_25C | 7d_15C | 0.576305 | no |
| 3d_25C | 7d_30C | 0.945569 | no |
| 3d_25C | 10d_25C | 0.599037 | no |
| 5d_25C | 7d_25C | 0.605476 | no |
| 5d_25C | 7d_15C | 0.627861 | no |
| 5d_25C | 7d_30C | 0.909550 | no |
| 5d_25C | 10d_25C | 0.566477 | no |
| 7d_25C | 7d_15C | 0.237237 | no |
| 7d_25C | 7d_30C | 0.717790 | no |
| 7d_25C | 10d_25C | 0.976742 | no |
| 7d_15C | 7d_30C | 0.497125 | no |
| 7d_15C | 10d_25C | 0.201552 | no |
| 7d_30C | 10d_25C | 0.679046 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g331.t1 MSRSAADATRFTATGPYAHSKTGGANQASDFGKKKSSVKSSPKQLGPNGQPETPKEKVERLRAQARAARKTQAAG SSADRWIESGRKFANKAHKGMVYSLIAASGVCGVLTVYSMISLTLYNRRQRTLWIEKELKTLKDAEIAYANGTAT TEQQELLKKEKIGEIMKQKREEEKAQKPWAKAKRFLFEKLNMEDSGANPAPTSASALAIEGADKGQGSVMEAVQA KQALDSAAAKTGAPLPGQLDVLAENVGQAAKSKTSSWTSWLTGR* |
| Coding | >Pro_DTO377G3_2|g331.t1 ATGTCCCGATCCGCCGCAGACGCAACGCGGTTCACGGCCACCGGGCCCTACGCCCACTCCAAGACCGGCGGCGCG AACCAGGCCTCAGACTTTGGGAAGAAGAAGTCCAGCGTGAAGTCATCACCAAAGCAACTTGGCCCGAATGGCCAA CCGGAGACACCCAAGGAGAAGGTGGAACGACTGCGAGCACAGGCACGGGCTGCTCGGAAGACACAGGCAGCTGGA AGCAGTGCGGACCGATGGATTGAGTCTGGGCGGAAGTTTGCCAATAAAGCACACAAGGGAATGGTTTACTCATTG ATTGCCGCGTCCGGTGTCTGCGGTGTTCTTACAGTCTACTCAATGATTTCGCTTACGCTCTATAACCGCCGCCAA CGCACGCTTTGGATCGAAAAGGAACTCAAGACCCTTAAGGATGCCGAGATCGCCTACGCCAACGGTACCGCAACC ACCGAGCAGCAAGAGCTCCTGAAGAAGGAGAAGATCGGTGAAATTATGAAGCAGAAGCGCGAGGAGGAGAAGGCA CAGAAGCCCTGGGCCAAGGCGAAGCGATTCCTCTTCGAGAAGCTAAACATGGAAGACAGCGGTGCCAATCCTGCA CCAACATCCGCGTCAGCCTTGGCTATCGAGGGTGCCGACAAGGGCCAAGGTAGTGTTATGGAGGCCGTGCAGGCC AAGCAAGCTCTCGATAGTGCTGCGGCGAAGACTGGCGCTCCTTTGCCCGGTCAGTTGGATGTGCTGGCTGAGAAT GTGGGACAGGCTGCGAAGAGCAAGACATCAAGCTGGACTAGCTGGTTGACGGGGCGATAG |
| Transcript | >Pro_DTO377G3_2|g331.t1 ATGTCCCGATCCGCCGCAGACGCAACGCGGTTCACGGCCACCGGGCCCTACGCCCACTCCAAGACCGGCGGCGCG AACCAGGCCTCAGACTTTGGGAAGAAGAAGTCCAGCGTGAAGTCATCACCAAAGCAACTTGGCCCGAATGGCCAA CCGGAGACACCCAAGGAGAAGGTGGAACGACTGCGAGCACAGGCACGGGCTGCTCGGAAGACACAGGCAGCTGGA AGCAGTGCGGACCGATGGATTGAGTCTGGGCGGAAGTTTGCCAATAAAGCACACAAGGGAATGGTTTACTCATTG ATTGCCGCGTCCGGTGTCTGCGGTGTTCTTACAGTCTACTCAATGATTTCGCTTACGCTCTATAACCGCCGCCAA CGCACGCTTTGGATCGAAAAGGAACTCAAGACCCTTAAGGATGCCGAGATCGCCTACGCCAACGGTACCGCAACC ACCGAGCAGCAAGAGCTCCTGAAGAAGGAGAAGATCGGTGAAATTATGAAGCAGAAGCGCGAGGAGGAGAAGGCA CAGAAGCCCTGGGCCAAGGCGAAGCGATTCCTCTTCGAGAAGCTAAACATGGAAGACAGCGGTGCCAATCCTGCA CCAACATCCGCGTCAGCCTTGGCTATCGAGGGTGCCGACAAGGGCCAAGGTAGTGTTATGGAGGCCGTGCAGGCC AAGCAAGCTCTCGATAGTGCTGCGGCGAAGACTGGCGCTCCTTTGCCCGGTCAGTTGGATGTGCTGGCTGAGAAT GTGGGACAGGCTGCGAAGAGCAAGACATCAAGCTGGACTAGCTGGTTGACGGGGCGATAG |
| Gene | >Pro_DTO377G3_2|g331.t1 ATGTCCCGATCCGCCGCAGACGCAACGCGGTTCACGGCCACCGGGCCCTACGCCCACTCCAAGACCGGCGGCGCG AACCAGGCCTCAGACTTTGGGAAGAAGAAGTCCAGCGTGAAGTCATCACCAAAGCAACTTGGCCCGAATGGCCAA CCGGAGACACCCAAGGAGAAGGTGGAACGACTGCGAGCACAGGCACGGGCTGCTCGGAAGACACAGGCAGCTGGA AGCAGTGCGGACCGATGGATTGAGTCTGGGCGGAAGTTTGCCAATAAAGCACACAAGGGAATGGTTTACTCATTG ATTGCCGCGTCCGGTACGTTTCCTGCCCTGTGGGATATGAGCAAAATACTAGCAACACAACATACGATCCTCCGA AGTCCGAGTCAGCAATGACAAGCAACGGACCCCCAGTTGATCCCTACTGGACTTATACTAATCCTTCTATGTTAT AATAGGTGTCTGCGGTGTTCTTACAGTCTACTCAATGATTTCGCTTACGCTCTATAACCGCCGCCAACGCACGCT TTGGATCGAAAAGGAACTCAAGACCCTTAAGGATGCCGAGATCGCCTACGCCAACGGTACCGCAACCACCGAGCA GCAAGAGCTCCTGAAGAAGGAGAAGATCGGTGAAATTATGAAGCAGAAGCGCGAGGAGGAGAAGGCACAGAAGCC CTGGGCCAAGGCGAAGCGATTCCTCTTCGAGAAGCTAAACATGGAAGACAGCGGTGCCAATCCTGCACCAACATC CGCGTCAGCCTTGGCTATCGAGGGTGCCGACAAGGGCCAAGGTAGTGTTATGGAGGCCGTGCAGGCCAAGCAAGC TCTCGATAGTGCTGCGGCGAAGACTGGCGCTCCTTTGCCCGGTCAGTTGGATGTGCTGGCTGAGAATGTGGGACA GGCTGCGAAGAGCAAGACATCAAGCTGGACTAGCTGGTTGACGGGGCGATAG |