Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3307.t1
Gene name
Locationscaffold_05:307590..307968
Strand-
Gene length (bp)378
Transcript length (bp)378
Coding sequence length (bp)378
Protein length (aa) 126

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02801 Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain 8.0E-09 17 63

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.20 0.0 0.65
5d_25C Five days - 25 degrees Celsius 0.47 0.0 1.28
7d_25C Seven days - 25 degrees Celsius 1.31 0.0 2.98
10d_25C Ten days - 25 degrees Celsius 0.77 0.0 1.91
7d_15C Seven days - 15 degrees Celsius 1.19 0.0 2.72
7d_30C Seven days - 30 degrees Celsius 0.41 0.0 1.22

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.000000 no
3d_25C 7d_25C 0.422759 no
3d_25C 7d_15C 0.430837 no
3d_25C 7d_30C 1.000000 no
3d_25C 10d_25C 1.000000 no
5d_25C 7d_25C 0.501779 no
5d_25C 7d_15C 0.524575 no
5d_25C 7d_30C 1.000000 no
5d_25C 10d_25C 1.000000 no
7d_25C 7d_15C 0.960858 no
7d_25C 7d_30C 0.439931 no
7d_25C 10d_25C 0.711924 no
7d_15C 7d_30C 0.507204 no
7d_15C 10d_25C 0.767539 no
7d_30C 10d_25C 1.000000 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3307.t1
MISVLDTSAPTLSEVPKGRTEEQALYLGSAKANIGHGGASSGVSALIKVRLMIQKIMIVPHCRIKTKTNSKFLTD
LGERNINIALKPTVWERSTDPSRPRRVFVNNFSAAVGNSVLLIEDAPVQK*
Coding >Pro_DTO377G3_2|g3307.t1
ATGATCAGTGTCTTGGATACTTCCGCCCCGACGCTCTCGGAGGTCCCCAAGGGCCGGACGGAGGAGCAAGCTCTC
TATTTGGGCTCAGCAAAGGCAAACATCGGCCACGGTGGGGCGTCCTCCGGTGTCTCGGCCCTGATAAAAGTGCGT
CTGATGATACAGAAGATCATGATTGTCCCTCACTGTAGGATCAAGACCAAAACCAATTCCAAGTTCCTGACTGAT
CTAGGAGAGCGAAATATCAATATCGCTCTGAAGCCAACGGTGTGGGAGAGAAGTACCGACCCTTCCAGACCTCGC
CGCGTCTTCGTGAACAACTTCAGCGCGGCTGTTGGCAACTCAGTACTCTTGATTGAAGACGCACCAGTCCAGAAG
TAG
Transcript >Pro_DTO377G3_2|g3307.t1
ATGATCAGTGTCTTGGATACTTCCGCCCCGACGCTCTCGGAGGTCCCCAAGGGCCGGACGGAGGAGCAAGCTCTC
TATTTGGGCTCAGCAAAGGCAAACATCGGCCACGGTGGGGCGTCCTCCGGTGTCTCGGCCCTGATAAAAGTGCGT
CTGATGATACAGAAGATCATGATTGTCCCTCACTGTAGGATCAAGACCAAAACCAATTCCAAGTTCCTGACTGAT
CTAGGAGAGCGAAATATCAATATCGCTCTGAAGCCAACGGTGTGGGAGAGAAGTACCGACCCTTCCAGACCTCGC
CGCGTCTTCGTGAACAACTTCAGCGCGGCTGTTGGCAACTCAGTACTCTTGATTGAAGACGCACCAGTCCAGAAG
TAG
Gene >Pro_DTO377G3_2|g3307.t1
ATGATCAGTGTCTTGGATACTTCCGCCCCGACGCTCTCGGAGGTCCCCAAGGGCCGGACGGAGGAGCAAGCTCTC
TATTTGGGCTCAGCAAAGGCAAACATCGGCCACGGTGGGGCGTCCTCCGGTGTCTCGGCCCTGATAAAAGTGCGT
CTGATGATACAGAAGATCATGATTGTCCCTCACTGTAGGATCAAGACCAAAACCAATTCCAAGTTCCTGACTGAT
CTAGGAGAGCGAAATATCAATATCGCTCTGAAGCCAACGGTGTGGGAGAGAAGTACCGACCCTTCCAGACCTCGC
CGCGTCTTCGTGAACAACTTCAGCGCGGCTGTTGGCAACTCAGTACTCTTGATTGAAGACGCACCAGTCCAGAAG
TAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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