Protein ID | Pro_DTO377G3_2|g3307.t1 |
Gene name | |
Location | scaffold_05:307590..307968 |
Strand | - |
Gene length (bp) | 378 |
Transcript length (bp) | 378 |
Coding sequence length (bp) | 378 |
Protein length (aa) | 126 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02801 | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain | 8.0E-09 | 17 | 63 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 21 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 0.20 | 0.0 | 0.65 |
5d_25C | Five days - 25 degrees Celsius | 0.47 | 0.0 | 1.28 |
7d_25C | Seven days - 25 degrees Celsius | 1.31 | 0.0 | 2.98 |
10d_25C | Ten days - 25 degrees Celsius | 0.77 | 0.0 | 1.91 |
7d_15C | Seven days - 15 degrees Celsius | 1.19 | 0.0 | 2.72 |
7d_30C | Seven days - 30 degrees Celsius | 0.41 | 0.0 | 1.22 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 1.000000 | no |
3d_25C | 7d_25C | 0.422759 | no |
3d_25C | 7d_15C | 0.430837 | no |
3d_25C | 7d_30C | 1.000000 | no |
3d_25C | 10d_25C | 1.000000 | no |
5d_25C | 7d_25C | 0.501779 | no |
5d_25C | 7d_15C | 0.524575 | no |
5d_25C | 7d_30C | 1.000000 | no |
5d_25C | 10d_25C | 1.000000 | no |
7d_25C | 7d_15C | 0.960858 | no |
7d_25C | 7d_30C | 0.439931 | no |
7d_25C | 10d_25C | 0.711924 | no |
7d_15C | 7d_30C | 0.507204 | no |
7d_15C | 10d_25C | 0.767539 | no |
7d_30C | 10d_25C | 1.000000 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g3307.t1 MISVLDTSAPTLSEVPKGRTEEQALYLGSAKANIGHGGASSGVSALIKVRLMIQKIMIVPHCRIKTKTNSKFLTD LGERNINIALKPTVWERSTDPSRPRRVFVNNFSAAVGNSVLLIEDAPVQK* |
Coding | >Pro_DTO377G3_2|g3307.t1 ATGATCAGTGTCTTGGATACTTCCGCCCCGACGCTCTCGGAGGTCCCCAAGGGCCGGACGGAGGAGCAAGCTCTC TATTTGGGCTCAGCAAAGGCAAACATCGGCCACGGTGGGGCGTCCTCCGGTGTCTCGGCCCTGATAAAAGTGCGT CTGATGATACAGAAGATCATGATTGTCCCTCACTGTAGGATCAAGACCAAAACCAATTCCAAGTTCCTGACTGAT CTAGGAGAGCGAAATATCAATATCGCTCTGAAGCCAACGGTGTGGGAGAGAAGTACCGACCCTTCCAGACCTCGC CGCGTCTTCGTGAACAACTTCAGCGCGGCTGTTGGCAACTCAGTACTCTTGATTGAAGACGCACCAGTCCAGAAG TAG |
Transcript | >Pro_DTO377G3_2|g3307.t1 ATGATCAGTGTCTTGGATACTTCCGCCCCGACGCTCTCGGAGGTCCCCAAGGGCCGGACGGAGGAGCAAGCTCTC TATTTGGGCTCAGCAAAGGCAAACATCGGCCACGGTGGGGCGTCCTCCGGTGTCTCGGCCCTGATAAAAGTGCGT CTGATGATACAGAAGATCATGATTGTCCCTCACTGTAGGATCAAGACCAAAACCAATTCCAAGTTCCTGACTGAT CTAGGAGAGCGAAATATCAATATCGCTCTGAAGCCAACGGTGTGGGAGAGAAGTACCGACCCTTCCAGACCTCGC CGCGTCTTCGTGAACAACTTCAGCGCGGCTGTTGGCAACTCAGTACTCTTGATTGAAGACGCACCAGTCCAGAAG TAG |
Gene | >Pro_DTO377G3_2|g3307.t1 ATGATCAGTGTCTTGGATACTTCCGCCCCGACGCTCTCGGAGGTCCCCAAGGGCCGGACGGAGGAGCAAGCTCTC TATTTGGGCTCAGCAAAGGCAAACATCGGCCACGGTGGGGCGTCCTCCGGTGTCTCGGCCCTGATAAAAGTGCGT CTGATGATACAGAAGATCATGATTGTCCCTCACTGTAGGATCAAGACCAAAACCAATTCCAAGTTCCTGACTGAT CTAGGAGAGCGAAATATCAATATCGCTCTGAAGCCAACGGTGTGGGAGAGAAGTACCGACCCTTCCAGACCTCGC CGCGTCTTCGTGAACAACTTCAGCGCGGCTGTTGGCAACTCAGTACTCTTGATTGAAGACGCACCAGTCCAGAAG TAG |