© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3286.t1 |
| Gene name | |
| Location | scaffold_05:220594..221845 |
| Strand | - |
| Gene length (bp) | 1251 |
| Transcript length (bp) | 1251 |
| Coding sequence length (bp) | 1251 |
| Protein length (aa) | 417 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12998 | ING | Inhibitor of growth proteins N-terminal histone-binding | 1.0E-25 | 11 | 115 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 52.78 | 30.98 | 74.57 |
| 5d_25C | Five days - 25 degrees Celsius | 64.83 | 38.83 | 90.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 70.01 | 42.14 | 97.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 110.90 | 67.90 | 153.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 64.12 | 38.21 | 90.04 |
| 7d_30C | Seven days - 30 degrees Celsius | 74.60 | 44.82 | 104.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.418753 | no |
| 3d_25C | 7d_25C | 0.234077 | no |
| 3d_25C | 7d_15C | 0.450849 | no |
| 3d_25C | 7d_30C | 0.129599 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.809044 | no |
| 5d_25C | 7d_15C | 0.977633 | no |
| 5d_25C | 7d_30C | 0.611909 | no |
| 5d_25C | 10d_25C | 0.009124 | yes |
| 7d_25C | 7d_15C | 0.773907 | no |
| 7d_25C | 7d_30C | 0.843099 | no |
| 7d_25C | 10d_25C | 0.028642 | yes |
| 7d_15C | 7d_30C | 0.578587 | no |
| 7d_15C | 10d_25C | 0.006371 | yes |
| 7d_30C | 10d_25C | 0.068588 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3286.t1 MAHGAEDCATVLEQFVHDVANLPAELNHLMEEIQAKDKLMQECRATINSRDSSIQKFIKLNGSLTPNPKEEPYSK TILQNMDKSHELQNEKIQLSEKACVLLDRQIKRLDVRIRDLVNEGLLTNDPPLPSLFDSKNKYRNPPKIFLPDST PSDSTAYSTPLNPTSGNANAILAAAQRLNQSTAPRVTGSAAQLGQTTARSSAPATPAAAAVVHLQQRQRESSAGA VDSKRRRLNPSLNTLPVASSNLRQSSMGPGTPKPGTPAGSRAGSAGPRASMGIKKALTKKVAPHHQVKKLKTASG KPIKRSSSASGRIKASKKSPNGEGDEDDDSMLSSADTSDSDKSDGAADEDVDDEDEDEGNEDSKVYCTCRTVSHG DMVACDNDECPYEWFHWKCVGLTREPVGTWYCDECRRTLGK* |
| Coding | >Pro_DTO377G3_2|g3286.t1 ATGGCACACGGTGCGGAGGACTGCGCAACTGTTCTGGAGCAGTTTGTCCACGATGTGGCAAATCTCCCGGCTGAG CTCAACCACCTCATGGAGGAAATTCAGGCTAAGGACAAGCTTATGCAGGAATGCCGCGCTACAATCAACTCGCGC GACAGCAGCATTCAGAAGTTCATCAAACTGAACGGCAGTCTAACACCGAACCCAAAGGAAGAGCCATACAGCAAG ACTATTCTGCAAAATATGGATAAATCACACGAGCTGCAGAACGAGAAGATCCAGCTTAGCGAGAAGGCATGCGTC CTCCTTGATCGCCAGATCAAACGACTCGACGTGCGCATTCGCGATCTAGTCAACGAAGGTCTCCTCACCAACGAC CCGCCTCTCCCTTCCCTCTTCGACTCCAAAAACAAATACCGCAACCCACCCAAAATCTTCCTCCCTGACTCCACC CCCTCCGACTCCACCGCGTACTCAACACCCCTCAACCCAACTTCCGGAAACGCGAATGCCATCCTGGCTGCTGCG CAGCGCTTGAACCAATCCACAGCACCTCGTGTCACCGGTTCCGCAGCGCAGCTCGGACAAACCACAGCACGCAGC TCTGCACCCGCCACACCCGCTGCTGCTGCTGTCGTGCACCTTCAGCAACGCCAACGCGAATCCTCCGCTGGCGCA GTGGACAGCAAGCGCCGCCGCTTGAACCCATCCCTCAACACCCTTCCCGTAGCCTCGTCGAACCTTCGCCAGTCC TCCATGGGCCCTGGTACACCGAAGCCGGGCACACCGGCTGGCAGCCGTGCAGGCAGTGCCGGCCCTCGTGCTAGC ATGGGCATCAAGAAGGCATTAACCAAAAAGGTCGCACCGCACCATCAAGTAAAGAAGCTGAAGACTGCCAGCGGA AAGCCGATCAAGCGCTCTTCTAGTGCTAGTGGTCGTATCAAGGCTTCGAAGAAATCTCCCAATGGGGAGGGCGAT GAGGATGATGACTCCATGCTCAGCAGTGCCGATACATCGGACTCCGACAAGAGTGACGGTGCTGCTGATGAGGAT GTCGATGATGAGGACGAGGATGAGGGTAATGAGGATTCGAAGGTCTATTGTACCTGTCGCACTGTTAGTCATGGG GATATGGTGGCTTGCGACAATGATGAGTGTCCCTATGAGTGGTTCCACTGGAAGTGTGTTGGCTTGACGCGCGAG CCGGTTGGGACTTGGTACTGTGACGAGTGCAGACGTACTCTAGGCAAGTGA |
| Transcript | >Pro_DTO377G3_2|g3286.t1 ATGGCACACGGTGCGGAGGACTGCGCAACTGTTCTGGAGCAGTTTGTCCACGATGTGGCAAATCTCCCGGCTGAG CTCAACCACCTCATGGAGGAAATTCAGGCTAAGGACAAGCTTATGCAGGAATGCCGCGCTACAATCAACTCGCGC GACAGCAGCATTCAGAAGTTCATCAAACTGAACGGCAGTCTAACACCGAACCCAAAGGAAGAGCCATACAGCAAG ACTATTCTGCAAAATATGGATAAATCACACGAGCTGCAGAACGAGAAGATCCAGCTTAGCGAGAAGGCATGCGTC CTCCTTGATCGCCAGATCAAACGACTCGACGTGCGCATTCGCGATCTAGTCAACGAAGGTCTCCTCACCAACGAC CCGCCTCTCCCTTCCCTCTTCGACTCCAAAAACAAATACCGCAACCCACCCAAAATCTTCCTCCCTGACTCCACC CCCTCCGACTCCACCGCGTACTCAACACCCCTCAACCCAACTTCCGGAAACGCGAATGCCATCCTGGCTGCTGCG CAGCGCTTGAACCAATCCACAGCACCTCGTGTCACCGGTTCCGCAGCGCAGCTCGGACAAACCACAGCACGCAGC TCTGCACCCGCCACACCCGCTGCTGCTGCTGTCGTGCACCTTCAGCAACGCCAACGCGAATCCTCCGCTGGCGCA GTGGACAGCAAGCGCCGCCGCTTGAACCCATCCCTCAACACCCTTCCCGTAGCCTCGTCGAACCTTCGCCAGTCC TCCATGGGCCCTGGTACACCGAAGCCGGGCACACCGGCTGGCAGCCGTGCAGGCAGTGCCGGCCCTCGTGCTAGC ATGGGCATCAAGAAGGCATTAACCAAAAAGGTCGCACCGCACCATCAAGTAAAGAAGCTGAAGACTGCCAGCGGA AAGCCGATCAAGCGCTCTTCTAGTGCTAGTGGTCGTATCAAGGCTTCGAAGAAATCTCCCAATGGGGAGGGCGAT GAGGATGATGACTCCATGCTCAGCAGTGCCGATACATCGGACTCCGACAAGAGTGACGGTGCTGCTGATGAGGAT GTCGATGATGAGGACGAGGATGAGGGTAATGAGGATTCGAAGGTCTATTGTACCTGTCGCACTGTTAGTCATGGG GATATGGTGGCTTGCGACAATGATGAGTGTCCCTATGAGTGGTTCCACTGGAAGTGTGTTGGCTTGACGCGCGAG CCGGTTGGGACTTGGTACTGTGACGAGTGCAGACGTACTCTAGGCAAGTGA |
| Gene | >Pro_DTO377G3_2|g3286.t1 ATGGCACACGGTGCGGAGGACTGCGCAACTGTTCTGGAGCAGTTTGTCCACGATGTGGCAAATCTCCCGGCTGAG CTCAACCACCTCATGGAGGAAATTCAGGCTAAGGACAAGCTTATGCAGGAATGCCGCGCTACAATCAACTCGCGC GACAGCAGCATTCAGAAGTTCATCAAACTGAACGGCAGTCTAACACCGAACCCAAAGGAAGAGCCATACAGCAAG ACTATTCTGCAAAATATGGATAAATCACACGAGCTGCAGAACGAGAAGATCCAGCTTAGCGAGAAGGCATGCGTC CTCCTTGATCGCCAGATCAAACGACTCGACGTGCGCATTCGCGATCTAGTCAACGAAGGTCTCCTCACCAACGAC CCGCCTCTCCCTTCCCTCTTCGACTCCAAAAACAAATACCGCAACCCACCCAAAATCTTCCTCCCTGACTCCACC CCCTCCGACTCCACCGCGTACTCAACACCCCTCAACCCAACTTCCGGAAACGCGAATGCCATCCTGGCTGCTGCG CAGCGCTTGAACCAATCCACAGCACCTCGTGTCACCGGTTCCGCAGCGCAGCTCGGACAAACCACAGCACGCAGC TCTGCACCCGCCACACCCGCTGCTGCTGCTGTCGTGCACCTTCAGCAACGCCAACGCGAATCCTCCGCTGGCGCA GTGGACAGCAAGCGCCGCCGCTTGAACCCATCCCTCAACACCCTTCCCGTAGCCTCGTCGAACCTTCGCCAGTCC TCCATGGGCCCTGGTACACCGAAGCCGGGCACACCGGCTGGCAGCCGTGCAGGCAGTGCCGGCCCTCGTGCTAGC ATGGGCATCAAGAAGGCATTAACCAAAAAGGTCGCACCGCACCATCAAGTAAAGAAGCTGAAGACTGCCAGCGGA AAGCCGATCAAGCGCTCTTCTAGTGCTAGTGGTCGTATCAAGGCTTCGAAGAAATCTCCCAATGGGGAGGGCGAT GAGGATGATGACTCCATGCTCAGCAGTGCCGATACATCGGACTCCGACAAGAGTGACGGTGCTGCTGATGAGGAT GTCGATGATGAGGACGAGGATGAGGGTAATGAGGATTCGAAGGTCTATTGTACCTGTCGCACTGTTAGTCATGGG GATATGGTGGCTTGCGACAATGATGAGTGTCCCTATGAGTGGTTCCACTGGAAGTGTGTTGGCTTGACGCGCGAG CCGGTTGGGACTTGGTACTGTGACGAGTGCAGACGTACTCTAGGCAAGTGA |