© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3284.t1 |
| Gene name | |
| Location | scaffold_05:216727..218617 |
| Strand | - |
| Gene length (bp) | 1890 |
| Transcript length (bp) | 1698 |
| Coding sequence length (bp) | 1698 |
| Protein length (aa) | 566 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17830 | STI1 | STI1 domain | 6.6E-21 | 140 | 194 |
| PF17830 | STI1 | STI1 domain | 8.5E-14 | 504 | 557 |
| PF13424 | TPR_12 | Tetratricopeptide repeat | 1.7E-07 | 278 | 344 |
| PF13432 | TPR_16 | Tetratricopeptide repeat | 5.6E-04 | 7 | 68 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 1.5E-01 | 73 | 102 |
| PF13181 | TPR_8 | Tetratricopeptide repeat | 2.1E-05 | 317 | 344 |
| PF13176 | TPR_7 | Tetratricopeptide repeat | 8.8E-04 | 319 | 348 |
| PF13374 | TPR_10 | Tetratricopeptide repeat | 1.4E-02 | 39 | 65 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 289.68 | 169.20 | 410.16 |
| 5d_25C | Five days - 25 degrees Celsius | 287.50 | 168.41 | 406.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 229.04 | 134.94 | 323.14 |
| 10d_25C | Ten days - 25 degrees Celsius | 327.06 | 189.18 | 464.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 297.29 | 172.14 | 422.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 285.54 | 166.95 | 404.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.983172 | no |
| 3d_25C | 7d_25C | 0.349485 | no |
| 3d_25C | 7d_15C | 0.944111 | no |
| 3d_25C | 7d_30C | 0.969718 | no |
| 3d_25C | 10d_25C | 0.681371 | no |
| 5d_25C | 7d_25C | 0.370593 | no |
| 5d_25C | 7d_15C | 0.926222 | no |
| 5d_25C | 7d_30C | 0.985678 | no |
| 5d_25C | 10d_25C | 0.659386 | no |
| 7d_25C | 7d_15C | 0.296666 | no |
| 7d_25C | 7d_30C | 0.390613 | no |
| 7d_25C | 10d_25C | 0.127209 | no |
| 7d_15C | 7d_30C | 0.908473 | no |
| 7d_15C | 10d_25C | 0.760237 | no |
| 7d_30C | 10d_25C | 0.637214 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3284.t1 MADALKAEGNKAFSAKDYPTAIEKFSEALAIEPENHILYSNRSAVYSAQHEYQKALEDAEKAIEIKPDWSKGHAR KGAAYRGLGDLLAAHDAYDEALKIEPGNAQAKSGMEATQRAINAEATADGVSGDPTGGLGGMFNDPALFQKLANN PKTAALLGDAEFMAKLQKIQQNPNSVGEEIRDPRFLQVMSVLLGIDMNFGGEGAEPPIPSAKPSTSQSKKEPTPE PEPVDEEAIAKKQAKEAADAEKKIGNDFYKKKQFDEAIEHYTKAWDLFKDITYLNNIGAAKFEKADYQGAIEICQ KATEEGRDLRADFTLMAKAYTRIGSAHEKLGDLAQAIEFYNKSLMEHRTPDTLTKLRNAEKTKITTERNAYIDPA EAEKARELGQQKFQEGDWPGAVDAFTEMTKRAPDDPRGYSNRAAALIKLMAFPGAVQDCDEAIKRDAKFIRAYMR KGAALIAMKEYNRALDTFTEAADHDDGKHAREIEQQQQKCLDAQFSARAGETEEQTMARIQNDPDIMAVLQDPVM QSILQQAKSDPAALQEHMKNSQVRMKIQKLMAAGVIRMGR* |
| Coding | >Pro_DTO377G3_2|g3284.t1 ATGGCTGACGCTTTGAAGGCAGAAGGCAACAAGGCCTTTTCTGCTAAGGACTATCCTACTGCTATTGAGAAATTC TCTGAGGCCCTTGCTATCGAACCCGAAAACCACATCCTCTACTCCAACCGCTCTGCCGTCTACTCCGCCCAGCAC GAATATCAAAAAGCCCTCGAAGATGCCGAGAAGGCGATCGAGATCAAGCCCGATTGGTCCAAGGGCCATGCCCGC AAGGGTGCTGCGTACCGCGGCCTCGGAGATCTGTTGGCTGCGCATGATGCCTATGACGAGGCCCTGAAGATCGAG CCCGGCAACGCACAGGCCAAGTCCGGTATGGAGGCGACCCAGCGCGCCATCAATGCGGAGGCTACCGCAGATGGT GTCAGTGGTGACCCAACAGGAGGTCTCGGTGGAATGTTCAACGACCCGGCTCTGTTCCAGAAGTTGGCCAACAAC CCCAAGACCGCCGCCCTGCTGGGAGATGCCGAGTTCATGGCTAAGCTGCAGAAGATCCAACAGAACCCTAACAGT GTCGGAGAGGAAATCCGCGACCCGCGCTTCCTTCAGGTTATGAGTGTGCTTCTCGGTATTGATATGAACTTCGGT GGCGAGGGAGCGGAGCCTCCTATTCCTTCTGCTAAACCCAGCACCTCGCAGTCCAAGAAGGAGCCCACCCCGGAG CCTGAGCCAGTAGACGAGGAGGCAATCGCCAAGAAGCAGGCCAAGGAGGCTGCTGATGCTGAGAAGAAGATTGGT AACGATTTCTACAAGAAGAAGCAGTTCGATGAGGCCATTGAGCACTATACCAAGGCTTGGGACTTGTTCAAGGAT ATCACCTACCTGAACAACATTGGTGCTGCCAAGTTCGAGAAGGCCGATTACCAAGGCGCAATCGAGATCTGCCAA AAGGCTACCGAAGAGGGCCGCGACTTGCGTGCCGACTTCACGCTGATGGCCAAGGCCTACACCCGAATTGGTTCT GCACACGAGAAGCTGGGCGACCTCGCGCAGGCCATCGAATTCTACAACAAGTCGCTCATGGAGCACCGCACCCCT GATACCCTGACCAAGCTCCGTAACGCCGAGAAGACCAAGATCACGACCGAGAGGAACGCTTACATTGACCCTGCC GAGGCCGAGAAGGCTCGCGAGCTTGGCCAGCAGAAGTTCCAGGAAGGCGACTGGCCCGGTGCCGTTGACGCTTTC ACCGAGATGACCAAGCGTGCTCCCGACGACCCCCGCGGTTACTCTAACCGTGCCGCAGCCCTCATCAAGCTCATG GCATTCCCCGGTGCCGTGCAGGACTGCGACGAGGCCATTAAGCGCGATGCCAAATTCATCCGCGCGTACATGCGT AAGGGCGCTGCCCTTATCGCCATGAAGGAATACAACCGTGCCCTAGACACCTTCACCGAGGCCGCCGACCACGAC GACGGCAAGCACGCTCGCGAGATCGAGCAGCAGCAGCAGAAGTGCCTGGACGCCCAGTTCAGCGCTCGCGCTGGT GAGACCGAGGAGCAGACCATGGCTCGTATCCAAAATGACCCCGACATCATGGCCGTCCTCCAGGACCCCGTTATG CAGAGCATTCTCCAGCAGGCTAAGAGCGACCCCGCTGCCCTGCAGGAGCACATGAAGAACTCGCAGGTACGGATG AAGATCCAGAAGCTGATGGCTGCTGGCGTTATCCGCATGGGGCGGTAA |
| Transcript | >Pro_DTO377G3_2|g3284.t1 ATGGCTGACGCTTTGAAGGCAGAAGGCAACAAGGCCTTTTCTGCTAAGGACTATCCTACTGCTATTGAGAAATTC TCTGAGGCCCTTGCTATCGAACCCGAAAACCACATCCTCTACTCCAACCGCTCTGCCGTCTACTCCGCCCAGCAC GAATATCAAAAAGCCCTCGAAGATGCCGAGAAGGCGATCGAGATCAAGCCCGATTGGTCCAAGGGCCATGCCCGC AAGGGTGCTGCGTACCGCGGCCTCGGAGATCTGTTGGCTGCGCATGATGCCTATGACGAGGCCCTGAAGATCGAG CCCGGCAACGCACAGGCCAAGTCCGGTATGGAGGCGACCCAGCGCGCCATCAATGCGGAGGCTACCGCAGATGGT GTCAGTGGTGACCCAACAGGAGGTCTCGGTGGAATGTTCAACGACCCGGCTCTGTTCCAGAAGTTGGCCAACAAC CCCAAGACCGCCGCCCTGCTGGGAGATGCCGAGTTCATGGCTAAGCTGCAGAAGATCCAACAGAACCCTAACAGT GTCGGAGAGGAAATCCGCGACCCGCGCTTCCTTCAGGTTATGAGTGTGCTTCTCGGTATTGATATGAACTTCGGT GGCGAGGGAGCGGAGCCTCCTATTCCTTCTGCTAAACCCAGCACCTCGCAGTCCAAGAAGGAGCCCACCCCGGAG CCTGAGCCAGTAGACGAGGAGGCAATCGCCAAGAAGCAGGCCAAGGAGGCTGCTGATGCTGAGAAGAAGATTGGT AACGATTTCTACAAGAAGAAGCAGTTCGATGAGGCCATTGAGCACTATACCAAGGCTTGGGACTTGTTCAAGGAT ATCACCTACCTGAACAACATTGGTGCTGCCAAGTTCGAGAAGGCCGATTACCAAGGCGCAATCGAGATCTGCCAA AAGGCTACCGAAGAGGGCCGCGACTTGCGTGCCGACTTCACGCTGATGGCCAAGGCCTACACCCGAATTGGTTCT GCACACGAGAAGCTGGGCGACCTCGCGCAGGCCATCGAATTCTACAACAAGTCGCTCATGGAGCACCGCACCCCT GATACCCTGACCAAGCTCCGTAACGCCGAGAAGACCAAGATCACGACCGAGAGGAACGCTTACATTGACCCTGCC GAGGCCGAGAAGGCTCGCGAGCTTGGCCAGCAGAAGTTCCAGGAAGGCGACTGGCCCGGTGCCGTTGACGCTTTC ACCGAGATGACCAAGCGTGCTCCCGACGACCCCCGCGGTTACTCTAACCGTGCCGCAGCCCTCATCAAGCTCATG GCATTCCCCGGTGCCGTGCAGGACTGCGACGAGGCCATTAAGCGCGATGCCAAATTCATCCGCGCGTACATGCGT AAGGGCGCTGCCCTTATCGCCATGAAGGAATACAACCGTGCCCTAGACACCTTCACCGAGGCCGCCGACCACGAC GACGGCAAGCACGCTCGCGAGATCGAGCAGCAGCAGCAGAAGTGCCTGGACGCCCAGTTCAGCGCTCGCGCTGGT GAGACCGAGGAGCAGACCATGGCTCGTATCCAAAATGACCCCGACATCATGGCCGTCCTCCAGGACCCCGTTATG CAGAGCATTCTCCAGCAGGCTAAGAGCGACCCCGCTGCCCTGCAGGAGCACATGAAGAACTCGCAGGTACGGATG AAGATCCAGAAGCTGATGGCTGCTGGCGTTATCCGCATGGGGCGGTAA |
| Gene | >Pro_DTO377G3_2|g3284.t1 ATGGCTGACGCTTTGAAGGCAGAAGGCAACAAGGCCTTTTCTGCTAAGGACTATCCTACTGCTATGTACGCGCTA CCCCACCTTTAACGCTGTGACTTCGTCAAAGCAGAAACTGATAAAACCAGTGAGAAATTCTCTGAGGCCCTTGCT ATCGAACCCGAAAACCACATCCTCTACTCCAACCGCTCTGCCGTCTACTCCGCCCAGCACGAATATCAAAAAGCC CTCGAAGATGCCGAGAAGGCGATCGAGATCAAGCCCGATTGGTCCAAGGGCCATGCCCGCAAGGGTGCTGCGTAC CGCGGCCTCGGAGATCTGTGTACGTTATTCTAGTTGTGCCCGAATTGGTGGGATAATTGGCATTGTGACAAGGTG CTAACTGATGGCAGTGGCTGCGCATGATGCCTATGACGAGGCCCTGAAGATCGAGCCCGGCAACGCACAGGCCAA GTCCGGTATGGAGGCGACCCAGCGCGCCATCAATGCGGAGGCTACCGCAGATGGTGTCAGTGGTGACCCAACAGG AGGTCTCGGTGGAATGTTCAACGACCCGGCTCTGTTCCAGAAGTTGGCCAACAACCCCAAGACCGCCGCCCTGCT GGGAGATGCCGAGTTCATGGCTAAGCTGCAGAAGATCCAACAGAACCCTAACAGTGTCGGAGAGGAAATCCGCGA CCCGCGCTTCCTTCAGGTTATGAGTGTGCTTCTCGGTATTGATATGAACTTCGGTGGCGAGGGAGCGGAGCCTCC TATTCCTTCTGCTAAACCCAGCACCTCGCAGTCCAAGAAGGAGCCCACCCCGGAGCCTGAGCCAGTAGACGAGGA GGCAATCGCCAAGAAGCAGGCCAAGGAGGCTGCTGATGCTGAGAAGAAGATTGGTAACGATTTCTACAAGAAGAA GCAGTTCGATGAGGCCATTGAGCACTATACCAAGGCTTGGGACTTGTTCAAGGATATCACCTACCTGAACAACAT TGGTGCTGCCAAGTTCGAGAAGGCCGATTACCAAGGCGCAATCGAGATCTGCCAAAAGGCTACCGAAGAGGGCCG CGACTTGCGTGCCGACTTCACGCTGATGGCCAAGGCCTACACCCGAATTGGTTCTGCACACGAGAAGCTGGGCGA CCTCGCGCAGGCCATCGAATTCTACAACAAGTCGCTCATGGAGCACCGCACCCCTGATACCCTGACCAAGCTCCG TAACGCCGAGAAGACCAAGATCACGACCGAGAGGAACGCTTACATTGACCCTGCCGAGGCCGAGAAGGCTCGCGA GCTTGGCCAGCAGAAGTTCCAGGAAGGCGACTGGCCCGGTGCCGTTGACGCTTTCACCGAGATGACCAAGCGTGC TCCCGACGACCCCCGCGGTTACTCTAACCGTGCCGCAGCCCTCATCAAGCTCATGGCATTCCCCGGTGCCGTGCA GGACTGCGACGAGGCCATTAAGCGCGATGCCAAATTCATCCGCGCGTACATGCGTAAGGGCGCTGCCCTTATCGC CATGAAGGAATACAACCGTGCCCTAGACACCTTCACCGAGGCCGCCGACCACGACGACGGCAAGCACGCTCGCGA GATCGAGCAGCAGCAGCAGAAGTGCCTGGACGCCCAGTTCAGCGCTCGCGCTGGTGAGACCGAGGAGCAGACCAT GGCTCGTATCCAAAATGACCCCGACGTAAGATCTAATTTCCCCTGCACCGGATTATTCAGCATGAAGTTTACTAA CATTTTCTCCAGATCATGGCCGTCCTCCAGGACCCCGTTATGCAGAGCATTCTCCAGCAGGCTAAGAGCGACCCC GCTGCCCTGCAGGAGCACATGAAGAACTCGCAGGTACGGATGAAGATCCAGAAGCTGATGGCTGCTGGCGTTATC CGCATGGGGCGGTAA |