© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g3273.t1 |
| Gene name | |
| Location | scaffold_05:180484..182410 |
| Strand | + |
| Gene length (bp) | 1926 |
| Transcript length (bp) | 1557 |
| Coding sequence length (bp) | 1557 |
| Protein length (aa) | 519 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.8E-21 | 66 | 390 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 7.9E-16 | 88 | 493 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 91 | 113 | 22 |
| 3 | 126 | 148 | 22 |
| 4 | 180 | 202 | 22 |
| 5 | 223 | 245 | 22 |
| 6 | 336 | 358 | 22 |
| 7 | 371 | 393 | 22 |
| 8 | 403 | 422 | 19 |
| 9 | 429 | 451 | 22 |
| 10 | 488 | 510 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.02 | 0.0 | 0.11 |
| 5d_25C | Five days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.00 | 0.0 | 0.00 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.00 | 0.0 | 0.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3273.t1 MDEIQVDKKQIRPTESSTPDYEVSKLTTIDDYEVEDFYGSSTTKAYRLKSEFQWKLFVVTGFGWIVDNFASQGIG SVQPPIKQEFTGIVQVSYSSVAYYVGLILGASFWGLSSDLIGRKPAFNCTLLIAGIFLCAAAGSMNFIAFSALWA VIGTAAGGNVPVDSMIFLEFVPGSHQYLLTALSAWWNLSQLIVSLISWVFLAHFSCPTDATPETCSRSQNMGWRY TLITLGGLALAFTIIRIFVFKLPETPRYLLSQGRDQDAVNAINYVAKQNGKPEPLTLEMLQEIDARFGNTPSEGE SKRMSTKEIVKENMQAFRGEHYRALFATPKLGRQTLIIWAIWLTVGIAYPLFFAFLPSYLATKFTEKSSLSLTYR NYCITSAVGIVGPLSAAVSVNTRMGRRWMMSISAAVTGVFLFAYVGVNTPSADLAFSCVTSLLGNFEYAIMYAFT PESFPAPHRGTACGTAAALLRFGGLVASIISSQTGFTTAPIYASAALWIVVGVLCLGLPFETHGHDAL* |
| Coding | >Pro_DTO377G3_2|g3273.t1 ATGGACGAAATCCAAGTCGACAAGAAGCAGATCCGGCCAACAGAGAGCAGCACTCCGGACTATGAGGTTTCTAAG CTAACGACTATTGATGATTATGAGGTTGAGGATTTCTACGGATCCTCTACCACTAAGGCATACCGCTTGAAGTCT GAGTTCCAATGGAAACTCTTCGTGGTCACCGGTTTCGGATGGATAGTCGATAATTTTGCATCACAGGGCATTGGA AGTGTCCAGCCACCTATCAAGCAAGAGTTCACTGGTATCGTCCAAGTCAGCTACAGTTCCGTTGCGTATTATGTT GGCCTCATTTTGGGTGCTTCGTTTTGGGGTCTATCGAGCGATCTCATTGGACGCAAGCCAGCCTTCAATTGTACG CTACTCATTGCTGGCATATTTCTGTGTGCCGCTGCTGGTTCAATGAACTTCATTGCATTCAGTGCACTTTGGGCA GTCATTGGAACTGCAGCCGGTGGAAATGTGCCTGTTGATTCGATGATATTTCTAGAATTCGTCCCAGGAAGTCAT CAGTATCTTCTCACAGCTCTTTCGGCTTGGTGGAATCTGAGTCAACTTATTGTCTCCTTGATTTCTTGGGTATTC CTAGCCCACTTTAGTTGTCCAACTGATGCCACCCCAGAAACATGTTCTCGAAGCCAGAACATGGGATGGAGATAC ACACTCATCACTCTAGGAGGTCTAGCCCTCGCATTTACCATCATACGCATTTTTGTTTTCAAACTCCCTGAAACC CCCAGATATCTGCTCTCCCAGGGAAGAGATCAGGATGCGGTCAACGCCATTAATTATGTTGCGAAACAAAATGGA AAGCCAGAGCCCCTGACGCTTGAGATGCTTCAAGAAATCGATGCCAGGTTTGGAAATACTCCCAGCGAAGGAGAG TCTAAGCGAATGTCAACAAAAGAAATTGTGAAGGAGAACATGCAAGCGTTCCGAGGGGAGCACTACCGTGCACTG TTCGCAACTCCAAAGCTCGGTAGACAGACATTGATCATTTGGGCCATCTGGTTGACAGTCGGAATCGCATACCCG CTGTTCTTCGCCTTCTTACCTTCCTACCTTGCGACCAAATTCACAGAAAAATCGTCTCTCTCCCTAACATATCGC AACTACTGCATCACATCAGCTGTCGGAATAGTCGGACCATTATCTGCCGCAGTATCGGTTAATACCCGCATGGGA AGAAGATGGATGATGTCAATTTCAGCCGCTGTCACAGGCGTGTTCCTCTTCGCATATGTCGGAGTCAACACTCCA TCAGCCGACTTGGCATTTTCTTGTGTTACCAGCCTTCTAGGCAATTTCGAATACGCTATTATGTACGCGTTCACT CCAGAATCATTCCCAGCTCCTCATCGTGGCACGGCTTGCGGAACAGCGGCTGCGCTCCTTCGATTTGGAGGACTC GTCGCCAGTATTATCTCGTCGCAGACCGGTTTTACCACTGCACCAATCTATGCGAGCGCGGCATTGTGGATTGTT GTCGGAGTTTTGTGTCTGGGATTGCCGTTTGAGACACATGGACACGATGCGCTATGA |
| Transcript | >Pro_DTO377G3_2|g3273.t1 ATGGACGAAATCCAAGTCGACAAGAAGCAGATCCGGCCAACAGAGAGCAGCACTCCGGACTATGAGGTTTCTAAG CTAACGACTATTGATGATTATGAGGTTGAGGATTTCTACGGATCCTCTACCACTAAGGCATACCGCTTGAAGTCT GAGTTCCAATGGAAACTCTTCGTGGTCACCGGTTTCGGATGGATAGTCGATAATTTTGCATCACAGGGCATTGGA AGTGTCCAGCCACCTATCAAGCAAGAGTTCACTGGTATCGTCCAAGTCAGCTACAGTTCCGTTGCGTATTATGTT GGCCTCATTTTGGGTGCTTCGTTTTGGGGTCTATCGAGCGATCTCATTGGACGCAAGCCAGCCTTCAATTGTACG CTACTCATTGCTGGCATATTTCTGTGTGCCGCTGCTGGTTCAATGAACTTCATTGCATTCAGTGCACTTTGGGCA GTCATTGGAACTGCAGCCGGTGGAAATGTGCCTGTTGATTCGATGATATTTCTAGAATTCGTCCCAGGAAGTCAT CAGTATCTTCTCACAGCTCTTTCGGCTTGGTGGAATCTGAGTCAACTTATTGTCTCCTTGATTTCTTGGGTATTC CTAGCCCACTTTAGTTGTCCAACTGATGCCACCCCAGAAACATGTTCTCGAAGCCAGAACATGGGATGGAGATAC ACACTCATCACTCTAGGAGGTCTAGCCCTCGCATTTACCATCATACGCATTTTTGTTTTCAAACTCCCTGAAACC CCCAGATATCTGCTCTCCCAGGGAAGAGATCAGGATGCGGTCAACGCCATTAATTATGTTGCGAAACAAAATGGA AAGCCAGAGCCCCTGACGCTTGAGATGCTTCAAGAAATCGATGCCAGGTTTGGAAATACTCCCAGCGAAGGAGAG TCTAAGCGAATGTCAACAAAAGAAATTGTGAAGGAGAACATGCAAGCGTTCCGAGGGGAGCACTACCGTGCACTG TTCGCAACTCCAAAGCTCGGTAGACAGACATTGATCATTTGGGCCATCTGGTTGACAGTCGGAATCGCATACCCG CTGTTCTTCGCCTTCTTACCTTCCTACCTTGCGACCAAATTCACAGAAAAATCGTCTCTCTCCCTAACATATCGC AACTACTGCATCACATCAGCTGTCGGAATAGTCGGACCATTATCTGCCGCAGTATCGGTTAATACCCGCATGGGA AGAAGATGGATGATGTCAATTTCAGCCGCTGTCACAGGCGTGTTCCTCTTCGCATATGTCGGAGTCAACACTCCA TCAGCCGACTTGGCATTTTCTTGTGTTACCAGCCTTCTAGGCAATTTCGAATACGCTATTATGTACGCGTTCACT CCAGAATCATTCCCAGCTCCTCATCGTGGCACGGCTTGCGGAACAGCGGCTGCGCTCCTTCGATTTGGAGGACTC GTCGCCAGTATTATCTCGTCGCAGACCGGTTTTACCACTGCACCAATCTATGCGAGCGCGGCATTGTGGATTGTT GTCGGAGTTTTGTGTCTGGGATTGCCGTTTGAGACACATGGACACGATGCGCTATGA |
| Gene | >Pro_DTO377G3_2|g3273.t1 ATGGACGAAATCCAAGTCGACAAGAAGCAGATCCGGCCAACAGAGAGCAGCACTCCGGACTATGAGGTTTCTAAG CTAACGACTATTGATGATTATGAGGTTGAGGATTTCTACGGATCCTCTACCACTAAGGCATACCGCTTGAAGTCT GAGTTAGTAGGAAAATGCCTGGAGGAAATTGGAATGGGCTGGTATTCACTCCTCTCAATCTTGAGCAGTTGATTG CGGTACTGATATCCTGGCACTACTAGGTTCCAATGGAAACTCTTCGTGGTCACCGGTTTCGGATGGATAGTCGAT AATGTATGCAAGATCACTGCTTTCCTCCTGAAATCACTCTTGCTAACATATACTTCGAATAGTTTGCATCACAGG GCATTGGAAGTGTCCAGCCACCTATCAAGCAAGAGTTCACTGGTATCGTCCAAGTCAGCTACAGTTCCGTTGCGT ATTATGTTGGCCTCATTTTGGGTGCTTCGTTTTGGGGTCTATCGAGCGATCTCATTGGACGCAAGCCAGCCTTCA ATTGTACGCTACTCATTGCTGGCATATTTCTGTGTGCCGCTGCTGGTTCAATGAACTTCATTGCATTCAGTGCAC TTTGGGCAGTCATTGGAACTGCAGCCGGTGGAAATGTGCCTGTTGATTCGATGATATTTCTAGAATTCGTCCCAG GAAGGTGAGAGTTTTCAAGTTGACGATATTACTGTGAGCCGCTGCTAACTCAAAGACCTCCAGTCATCAGTATCT TCTCACAGCTCTTTCGGCTTGGTGGAATCTGAGTCAACTTATTGTCTCCTTGATTTCTTGGGTATTCCTAGCCCA CTTTAGTTGTCCAACTGATGCCACCCCAGAAACATGTTCTCGAAGCCAGAACATGGGATGGTAAGAGCCCCATGA TACACAGTGCATTTCCACGCTAATTTCGAATCATTAGGAGATACACACTCATCACTCTAGGAGGTCTAGCCCTCG CATTTACCATCATACGCATTTTTGTTTTCAAACTCCCTGAAACCCCCAGATATCTGCTCTCCCAGGGAAGAGATC AGGATGCGGTCAACGCCATTAATTATGTTGCGAAACAAAATGGAAAGCCAGAGCCCCTGACGCTTGAGATGCTTC AAGAAATCGATGCCAGGTTTGGAAATACTCCCAGCGAAGGAGAGTCTAAGCGAATGTCAACAAAAGAAATTGTGA AGGAGAACATGCAAGCGTTCCGAGGGGAGCACTACCGTGCACTGTTCGCAACTCCAAAGCTCGGTAGACAGACAT TGATCATTTGGGCCATCTGGTTGACAGTCGGTAAGTGAGACGCAATTCCTTATTATATCTCTACTCACACTATTC AGGAATCGCATACCCGCTGTTCTTCGCCTTCTTACCTTCCTACCTTGCGACCAAATTCACAGAAAAATCGTCTCT CTCCCTAACATATCGCAACTACTGCATCACATCAGCTGTCGGAATAGTCGGACCATTATCTGCCGCAGTATCGGT TAATACCCGCATGGGAAGAAGATGGATGATGTCAATTTCAGCCGCTGTCACAGGCGTGTTCCTCTTCGCATATGT CGGAGTCAACACTCCATCAGCCGACTTGGCATTTTCTTGTGTTACCAGCCTTCTAGGCAATTTCGGTGAGACTGC TATCATGGCCGATGTCTAATTTCATAGCTAATCAGTGTCACAGAATACGCTATTATGTACGCGTTCACTCCAGAA TCATTCCCAGCTCCTCATCGTGGCACGGCTTGCGGAACAGCGGCTGCGCTCCTTCGATTTGGAGGACTCGTCGCC AGTATTATCTCGTCGCAGACCGGTTTTACCACTGCACCAATCTATGCGAGCGCGGCATTGTGGATTGTTGTCGGA GTTTTGTGTCTGGGATTGCCGTTTGAGACACATGGACACGATGCGCTATGA |