© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g3264.t1 |
| Gene name | |
| Location | scaffold_05:161127..162453 |
| Strand | - |
| Gene length (bp) | 1326 |
| Transcript length (bp) | 1218 |
| Coding sequence length (bp) | 1218 |
| Protein length (aa) | 406 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00848 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) | 1.9E-09 | 183 | 225 |
| PF00848 | Ring_hydroxyl_A | Ring hydroxylating alpha subunit (catalytic domain) | 2.1E-11 | 255 | 354 |
| PF00355 | Rieske | Rieske [2Fe-2S] domain | 4.0E-14 | 42 | 128 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051537 | 2 iron, 2 sulfur cluster binding | Yes |
| GO:0044237 | cellular metabolic process | Yes |
| GO:0005506 | iron ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0009987 | cellular process | No |
| GO:0051540 | metal cluster binding | No |
| GO:0051536 | iron-sulfur cluster binding | No |
| GO:0008152 | metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.28 | 0.00 | 0.69 |
| 5d_25C | Five days - 25 degrees Celsius | 0.54 | 0.00 | 1.27 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.46 | 0.00 | 1.05 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.54 | 0.13 | 2.95 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.98 | 0.00 | 2.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.25 | 0.00 | 0.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 0.126810 | no |
| 3d_25C | 7d_30C | 1.000000 | no |
| 3d_25C | 10d_25C | 0.047696 | yes |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 0.461356 | no |
| 5d_25C | 7d_30C | 1.000000 | no |
| 5d_25C | 10d_25C | 0.137144 | no |
| 7d_25C | 7d_15C | 0.309146 | no |
| 7d_25C | 7d_30C | 1.000000 | no |
| 7d_25C | 10d_25C | 0.064169 | no |
| 7d_15C | 7d_30C | 0.123773 | no |
| 7d_15C | 10d_25C | 0.501975 | no |
| 7d_30C | 10d_25C | 0.048448 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3264.t1 MWRIFSAGTTAKEDPPHGLPASWYRSEAMYQLERRAIFSKRWMLLTHSSRFKKPGDYLSFTIANFSFFLIQDRDG TINSFHNVCRHRAFPVVQSSSGTTSILSCKYHGWSYGLKGNLAKAPRFETVPDFDKTQHSLFPIHVHVDKAGFVW VNLQAGETDVKWEDDYEKVDEEPRMQDFDFAAEFKFDHYWEMELDANWKGVIENYNECYHCATSHPLINGVSDLP KYRVEPKARYMEHHIFNKEGSDSQFRRAITYFYPTTSVTVTDKFFYIQRMIPVSATSSKIENEVYRHRDATDEEF ENINAFYRQVLDEDKELCVGTQENLNAGVFTNGELHPSKEKGPIHFQSSVRQMVIEHRKNEEKQGGSEIWPATPN PQFSKGSAEDESFCSQLDASSCMAKPELAW* |
| Coding | >Pro_DTO377G3_2|g3264.t1 ATGTGGCGGATTTTCAGCGCAGGAACCACGGCAAAAGAAGACCCTCCACATGGTCTACCAGCGTCATGGTATCGC TCAGAAGCAATGTACCAATTGGAAAGACGGGCAATCTTCTCGAAGCGATGGATGCTGCTCACCCACTCCAGCCGT TTCAAGAAACCGGGCGATTATCTCTCTTTCACAATCGCCAACTTCTCCTTCTTCCTTATCCAGGACCGCGACGGC ACAATCAACAGCTTCCACAACGTCTGCCGTCACCGCGCATTCCCCGTTGTACAGTCTTCCTCCGGCACTACATCC ATCCTCAGCTGCAAGTACCACGGATGGTCATACGGCCTGAAGGGCAATCTCGCCAAGGCTCCGCGGTTCGAGACA GTACCCGATTTCGACAAAACCCAGCACTCGCTATTCCCAATCCATGTGCACGTCGACAAAGCTGGCTTTGTGTGG GTCAATCTGCAGGCCGGTGAGACGGATGTGAAATGGGAAGACGATTATGAGAAAGTTGACGAGGAGCCCCGGATG CAGGACTTTGACTTTGCCGCAGAATTCAAGTTCGACCATTACTGGGAGATGGAATTGGACGCGAACTGGAAGGGT GTGATTGAGAATTATAATGAGTGCTACCATTGCGCTACTTCGCATCCGCTTATCAACGGCGTGTCGGATCTACCA AAATATCGGGTTGAGCCCAAGGCCCGGTATATGGAACATCATATCTTCAATAAGGAGGGTTCGGATAGCCAGTTT CGACGGGCGATCACGTATTTCTATCCGACGACTTCTGTTACGGTGACTGATAAATTCTTCTATATCCAGCGTATG ATCCCTGTTTCTGCTACCTCGAGCAAGATCGAAAATGAGGTTTACCGTCACCGGGATGCCACAGATGAAGAATTT GAGAATATCAACGCGTTTTACAGGCAGGTTCTCGACGAGGACAAGGAGCTTTGTGTTGGAACGCAGGAGAACCTC AATGCAGGGGTCTTTACCAATGGCGAACTACACCCTAGCAAAGAGAAGGGCCCCATACACTTTCAAAGCAGCGTC AGACAAATGGTCATAGAACACCGGAAAAATGAGGAAAAGCAAGGAGGATCCGAGATTTGGCCGGCCACCCCGAAC CCTCAGTTCTCGAAGGGTTCAGCAGAAGATGAGAGCTTTTGTTCGCAGTTGGATGCTTCTAGTTGTATGGCCAAA CCAGAACTGGCCTGGTAG |
| Transcript | >Pro_DTO377G3_2|g3264.t1 ATGTGGCGGATTTTCAGCGCAGGAACCACGGCAAAAGAAGACCCTCCACATGGTCTACCAGCGTCATGGTATCGC TCAGAAGCAATGTACCAATTGGAAAGACGGGCAATCTTCTCGAAGCGATGGATGCTGCTCACCCACTCCAGCCGT TTCAAGAAACCGGGCGATTATCTCTCTTTCACAATCGCCAACTTCTCCTTCTTCCTTATCCAGGACCGCGACGGC ACAATCAACAGCTTCCACAACGTCTGCCGTCACCGCGCATTCCCCGTTGTACAGTCTTCCTCCGGCACTACATCC ATCCTCAGCTGCAAGTACCACGGATGGTCATACGGCCTGAAGGGCAATCTCGCCAAGGCTCCGCGGTTCGAGACA GTACCCGATTTCGACAAAACCCAGCACTCGCTATTCCCAATCCATGTGCACGTCGACAAAGCTGGCTTTGTGTGG GTCAATCTGCAGGCCGGTGAGACGGATGTGAAATGGGAAGACGATTATGAGAAAGTTGACGAGGAGCCCCGGATG CAGGACTTTGACTTTGCCGCAGAATTCAAGTTCGACCATTACTGGGAGATGGAATTGGACGCGAACTGGAAGGGT GTGATTGAGAATTATAATGAGTGCTACCATTGCGCTACTTCGCATCCGCTTATCAACGGCGTGTCGGATCTACCA AAATATCGGGTTGAGCCCAAGGCCCGGTATATGGAACATCATATCTTCAATAAGGAGGGTTCGGATAGCCAGTTT CGACGGGCGATCACGTATTTCTATCCGACGACTTCTGTTACGGTGACTGATAAATTCTTCTATATCCAGCGTATG ATCCCTGTTTCTGCTACCTCGAGCAAGATCGAAAATGAGGTTTACCGTCACCGGGATGCCACAGATGAAGAATTT GAGAATATCAACGCGTTTTACAGGCAGGTTCTCGACGAGGACAAGGAGCTTTGTGTTGGAACGCAGGAGAACCTC AATGCAGGGGTCTTTACCAATGGCGAACTACACCCTAGCAAAGAGAAGGGCCCCATACACTTTCAAAGCAGCGTC AGACAAATGGTCATAGAACACCGGAAAAATGAGGAAAAGCAAGGAGGATCCGAGATTTGGCCGGCCACCCCGAAC CCTCAGTTCTCGAAGGGTTCAGCAGAAGATGAGAGCTTTTGTTCGCAGTTGGATGCTTCTAGTTGTATGGCCAAA CCAGAACTGGCCTGGTAG |
| Gene | >Pro_DTO377G3_2|g3264.t1 ATGTGGCGGATTTTCAGCGCAGGAACCACGGCAAAAGAAGACCCTCCACATGGTCTACCAGCGTCATGGTATCGC TCAGAAGCAATGTACCAATTGGAAAGACGGGCAATCTTCTCGAAGCGATGGATGCTGCTCACCCACTCCAGCCGT TTCAAGAAACCGGGCGATTATCTCTCTTTCACAATCGCCAACTTCTCCTTCTTCCTTATCCAGGACCGCGACGGC ACAATCAACAGCTTCCACAACGTCTGCCGTCACCGCGCATTCCCCGTTGTACAGTCTTCCTCCGGCACTACATCC ATCCTCAGCTGCAAGTACCACGGATGGTCATACGGCCTGAAGGGCAATCTCGCCAAGGCTCCGCGGTTCGAGACA GTACCCGATTTCGACAAAACCCAGCACTCGCTATTCCCAATCCATGTGCACGTCGACAAAGCTGGCTTTGTGTGG GTCAATCTGCAGGCCGGTGAGACGGATGTGAAATGGGAAGACGATTATGAGAAAGTTGACGAGGAGCCCCGGATG CAGGACTTTGACTTTGCCGCAGAATTCAAGTTCGACCATTACTGGGAGATGGAATTGGACGCGAACTGGAAGGGT GTGATTGAGAATTATAATGAGTGCTACCATTGCGCTACTTCGCATCCGCTTATCAACGGCGTGTCGGATCTACCA AAATATCGGGTTGAGCCCAAGGCCCGGTATATGGAACATCATATCTTCAATAAGGAGGGTTCGGATAGCCAGTTT CGACGGGCGATCACGTATTTCTATCCGACGACTTCTGTTACGGTGACGTGAGTATAGGAAATCCAAATGTGAAAG TCAACACCAGGGCTAACTAAGAACGAACTAGTGATAAATTCTTCTATATCCAGCGTATGATCCCTGTTTCTGCTA CCTCGAGCAAGATCGAAAATGAGGTTTACCGTCACCGGGATGCCACAGATGAAGAATTTGAGAATATCAACGCGT TTTACAGGCAGGTTCTCGACGAGGACAAGGAGCTTTGTGTTGGAACGCAGGAGAACCTCAATGCAGGGGTCTTTA CCAATGGCGAACTACACCCTAGCAAAGAGAAGGTAAATCGAACTGTGACAGTGCTAATACAGCGGCTAACCACGA CATTAGGGCCCCATACACTTTCAAAGCAGCGTCAGACAAATGGTCATAGAACACCGGAAAAATGAGGAAAAGCAA GGAGGATCCGAGATTTGGCCGGCCACCCCGAACCCTCAGTTCTCGAAGGGTTCAGCAGAAGATGAGAGCTTTTGT TCGCAGTTGGATGCTTCTAGTTGTATGGCCAAACCAGAACTGGCCTGGTAG |