© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3246.t1 |
| Gene name | |
| Location | scaffold_05:101452..104102 |
| Strand | - |
| Gene length (bp) | 2650 |
| Transcript length (bp) | 2112 |
| Coding sequence length (bp) | 2112 |
| Protein length (aa) | 704 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07731 | Cu-oxidase_2 | Multicopper oxidase | 6.0E-05 | 86 | 169 |
| PF07731 | Cu-oxidase_2 | Multicopper oxidase | 9.6E-36 | 560 | 681 |
| PF07732 | Cu-oxidase_3 | Multicopper oxidase | 6.4E-40 | 67 | 181 |
| PF00394 | Cu-oxidase | Multicopper oxidase | 2.6E-15 | 378 | 476 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0005507 | copper ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.5 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 39.65 | 24.10 | 55.19 |
| 5d_25C | Five days - 25 degrees Celsius | 63.65 | 39.15 | 88.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 82.11 | 49.95 | 114.26 |
| 10d_25C | Ten days - 25 degrees Celsius | 194.68 | 112.64 | 276.73 |
| 7d_15C | Seven days - 15 degrees Celsius | 21.08 | 11.88 | 30.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 87.78 | 53.55 | 122.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.023673 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.003625 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.267337 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.145487 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.829148 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3246.t1 MNVLDRIILCLCFLRLQEHLITLRDIELFIIIFFHQMPGFAFQLRAICTLLAVQAALGSLRTFNFTVHSAQRSPD GYFREVYVINGQQPGPMIEVDEGDDVEVFVRNELPVSTTIHWHGILQRGTPDMDGVPGVTQHQIPPGGNFTYRFS VKDEYGFYWYHSHFRAYYNDAIRGPLMIRPAPSRRRPFEDMAASRVEREQLLQAERDAVSILLNDWTHDLSDTIF SRYLETGAFPNCVDSILANGLGRVECLPKYMLDAGPGLGLTDEVNATHHNPTATMATSVMQMPTMARRMEDPADD NPHGQMSMPPMSTTNPSESTMSTTGGMTMPSSDTMGESDTMGESMRLGPRGCMPPMMFRQGYDINSLPSETCVNT TSQQLVVNANVSQGWLALNLVNSGAVSNLKVSLDSHSMHVYAADGLYVTLQEVKVLEIALGQRYSVMIKLDQPAG NYYLRFATYPNGDMQQVLEGQAIVSYNTTGNDTQDISVDPMSVWMLTNGSATQGANELVESRLAPFEGNRPPTTV ADVTRFFNINQTGIVTWVVDQYPYTEPTIPIIYGNRSDGWNSNTTLHLPTNSTVDIVMNVANSSMDTMGHPMHLH GHKFWVLGSGSGSFPYQSVAEAPSSLINLDDPPYRDTANLPPSGWLAIRYITDNPGAWILHCHIQWHIVSGMALV LVEGEDQLDSLIRQVALGTVLNALVVFS* |
| Coding | >Pro_DTO377G3_2|g3246.t1 ATGAATGTCCTTGACCGTATAATCCTCTGCCTTTGCTTCCTACGATTGCAAGAACATTTGATCACCCTCAGAGAC ATCGAACTCTTCATAATTATCTTTTTCCACCAAATGCCAGGCTTTGCATTCCAGCTCCGCGCAATATGCACCCTT CTTGCAGTACAAGCTGCTCTTGGTTCCCTACGAACGTTCAACTTCACCGTTCATAGCGCCCAGCGCAGCCCAGAT GGGTACTTCCGTGAAGTCTACGTAATCAATGGACAGCAGCCCGGTCCGATGATTGAAGTTGACGAAGGGGATGAT GTGGAGGTGTTCGTTCGCAATGAGTTGCCAGTTAGCACTACTATCCATTGGCATGGGATACTACAGCGTGGAACG CCAGACATGGATGGGGTCCCAGGAGTAACACAGCACCAAATACCACCTGGAGGAAATTTTACGTACAGATTTTCC GTGAAAGACGAGTATGGGTTCTACTGGTATCATTCGCATTTCCGCGCATACTACAACGATGCTATACGGGGCCCA CTCATGATCCGACCAGCACCCTCTCGTCGTCGACCGTTTGAAGACATGGCTGCAAGCAGAGTTGAGCGTGAACAG CTGCTACAGGCTGAGAGGGATGCGGTATCTATCCTCCTGAATGACTGGACACACGATCTGTCGGACACAATCTTT AGCCGGTACCTCGAAACAGGTGCCTTCCCCAACTGTGTTGACAGTATTCTGGCCAATGGCCTGGGAAGGGTAGAA TGCCTGCCAAAGTATATGCTCGATGCAGGCCCGGGGTTGGGCCTGACGGACGAAGTCAATGCCACACACCACAAC CCTACTGCGACAATGGCCACATCGGTAATGCAAATGCCAACGATGGCGAGAAGAATGGAAGATCCCGCCGATGAC AACCCCCACGGCCAGATGTCCATGCCTCCAATGAGCACAACCAACCCGTCAGAGTCAACCATGTCCACAACGGGC GGGATGACTATGCCCAGCTCAGACACCATGGGCGAGTCCGACACCATGGGCGAGTCAATGAGGTTGGGCCCTCGG GGCTGCATGCCACCTATGATGTTCAGGCAGGGATACGATATCAACTCGCTGCCATCAGAGACATGTGTGAACACA ACATCACAACAGTTAGTGGTCAACGCAAATGTATCTCAAGGATGGCTTGCCCTCAACCTTGTGAATTCTGGAGCT GTTAGCAACCTTAAGGTCTCTCTTGACAGTCATTCAATGCATGTCTATGCTGCAGACGGACTCTATGTGACCCTG CAGGAGGTTAAGGTTCTTGAAATCGCTCTCGGCCAACGATATTCTGTGATGATAAAGCTTGACCAGCCTGCCGGC AACTACTACCTTCGATTCGCTACTTATCCGAATGGTGATATGCAGCAGGTCTTGGAAGGCCAGGCAATAGTGTCC TATAATACCACCGGAAACGATACACAGGATATCTCGGTTGATCCAATGTCTGTTTGGATGTTGACTAACGGATCC GCTACACAAGGGGCCAATGAACTGGTAGAATCACGTCTGGCACCGTTTGAGGGTAATAGACCTCCCACTACAGTT GCCGATGTCACTCGGTTCTTCAATATCAATCAGACCGGCATTGTCACCTGGGTTGTGGACCAGTATCCGTATACT GAACCAACGATCCCAATCATCTACGGTAACAGGTCAGATGGATGGAATTCGAACACCACCCTCCATTTACCGACG AATTCGACCGTCGATATCGTTATGAATGTGGCAAATTCCTCGATGGATACGATGGGCCATCCAATGCACCTTCAT GGCCATAAATTCTGGGTTCTAGGTTCTGGCAGTGGCTCATTCCCTTACCAGTCGGTCGCAGAAGCGCCGTCGTCC CTTATTAACCTCGACGACCCTCCGTACAGGGATACCGCGAATTTACCACCATCAGGATGGCTAGCAATTCGCTAT ATCACCGATAACCCGGGCGCATGGATACTTCATTGCCATATCCAGTGGCATATTGTGTCTGGAATGGCGCTGGTC TTAGTAGAGGGCGAAGATCAGCTCGATAGTTTGATCCGGCAAGTCGCTCTCGGTACTGTGCTGAATGCACTGGTC GTGTTTTCATAG |
| Transcript | >Pro_DTO377G3_2|g3246.t1 ATGAATGTCCTTGACCGTATAATCCTCTGCCTTTGCTTCCTACGATTGCAAGAACATTTGATCACCCTCAGAGAC ATCGAACTCTTCATAATTATCTTTTTCCACCAAATGCCAGGCTTTGCATTCCAGCTCCGCGCAATATGCACCCTT CTTGCAGTACAAGCTGCTCTTGGTTCCCTACGAACGTTCAACTTCACCGTTCATAGCGCCCAGCGCAGCCCAGAT GGGTACTTCCGTGAAGTCTACGTAATCAATGGACAGCAGCCCGGTCCGATGATTGAAGTTGACGAAGGGGATGAT GTGGAGGTGTTCGTTCGCAATGAGTTGCCAGTTAGCACTACTATCCATTGGCATGGGATACTACAGCGTGGAACG CCAGACATGGATGGGGTCCCAGGAGTAACACAGCACCAAATACCACCTGGAGGAAATTTTACGTACAGATTTTCC GTGAAAGACGAGTATGGGTTCTACTGGTATCATTCGCATTTCCGCGCATACTACAACGATGCTATACGGGGCCCA CTCATGATCCGACCAGCACCCTCTCGTCGTCGACCGTTTGAAGACATGGCTGCAAGCAGAGTTGAGCGTGAACAG CTGCTACAGGCTGAGAGGGATGCGGTATCTATCCTCCTGAATGACTGGACACACGATCTGTCGGACACAATCTTT AGCCGGTACCTCGAAACAGGTGCCTTCCCCAACTGTGTTGACAGTATTCTGGCCAATGGCCTGGGAAGGGTAGAA TGCCTGCCAAAGTATATGCTCGATGCAGGCCCGGGGTTGGGCCTGACGGACGAAGTCAATGCCACACACCACAAC CCTACTGCGACAATGGCCACATCGGTAATGCAAATGCCAACGATGGCGAGAAGAATGGAAGATCCCGCCGATGAC AACCCCCACGGCCAGATGTCCATGCCTCCAATGAGCACAACCAACCCGTCAGAGTCAACCATGTCCACAACGGGC GGGATGACTATGCCCAGCTCAGACACCATGGGCGAGTCCGACACCATGGGCGAGTCAATGAGGTTGGGCCCTCGG GGCTGCATGCCACCTATGATGTTCAGGCAGGGATACGATATCAACTCGCTGCCATCAGAGACATGTGTGAACACA ACATCACAACAGTTAGTGGTCAACGCAAATGTATCTCAAGGATGGCTTGCCCTCAACCTTGTGAATTCTGGAGCT GTTAGCAACCTTAAGGTCTCTCTTGACAGTCATTCAATGCATGTCTATGCTGCAGACGGACTCTATGTGACCCTG CAGGAGGTTAAGGTTCTTGAAATCGCTCTCGGCCAACGATATTCTGTGATGATAAAGCTTGACCAGCCTGCCGGC AACTACTACCTTCGATTCGCTACTTATCCGAATGGTGATATGCAGCAGGTCTTGGAAGGCCAGGCAATAGTGTCC TATAATACCACCGGAAACGATACACAGGATATCTCGGTTGATCCAATGTCTGTTTGGATGTTGACTAACGGATCC GCTACACAAGGGGCCAATGAACTGGTAGAATCACGTCTGGCACCGTTTGAGGGTAATAGACCTCCCACTACAGTT GCCGATGTCACTCGGTTCTTCAATATCAATCAGACCGGCATTGTCACCTGGGTTGTGGACCAGTATCCGTATACT GAACCAACGATCCCAATCATCTACGGTAACAGGTCAGATGGATGGAATTCGAACACCACCCTCCATTTACCGACG AATTCGACCGTCGATATCGTTATGAATGTGGCAAATTCCTCGATGGATACGATGGGCCATCCAATGCACCTTCAT GGCCATAAATTCTGGGTTCTAGGTTCTGGCAGTGGCTCATTCCCTTACCAGTCGGTCGCAGAAGCGCCGTCGTCC CTTATTAACCTCGACGACCCTCCGTACAGGGATACCGCGAATTTACCACCATCAGGATGGCTAGCAATTCGCTAT ATCACCGATAACCCGGGCGCATGGATACTTCATTGCCATATCCAGTGGCATATTGTGTCTGGAATGGCGCTGGTC TTAGTAGAGGGCGAAGATCAGCTCGATAGTTTGATCCGGCAAGTCGCTCTCGGTACTGTGCTGAATGCACTGGTC GTGTTTTCATAG |
| Gene | >Pro_DTO377G3_2|g3246.t1 ATGAATGTCCTTGACCGTATAATCCTCTGCCTTTGCTTCCTACGATTGCAAGAACATTTGATCACCCTCAGAGAC ATCGAACTCTTCATAATTATCTTTTTCCACCAAATGCCAGGCTTTGCATTCCAGCTCCGCGCAATATGCACCCTT CTTGCAGTACAAGCTGCTCTTGGTTCCCTACGAACGTTCAACTTCACCGTTCATAGCGCCCAGCGCAGCCCAGGT TTGCAGATTGATTCCTTGCCTTCGTCAGACGCTAATCTTAGTTACCGATAGATGGGTACTTCCGTGAAGTCTACG TAATCAATGGACAGCAGCCCGGTCCGATGATTGAAGTTGACGAAGGGGATGATGTGGAGGTGTTCGTTCGCAATG AGTTGCCAGTTAGCACTACTATCCATTGGCATGGTATGTTATCGTCAGAGTATACGTGGCGGCTTAACTAAGCAC ATTAATCCAGGGATACTACAGCGTGGAACGCCAGACATGGATGGGGTCCCAGGAGTAACACAGGTGCGCACTACT ACCTTCTATCACCCTTCAAGCACTGAAGACAGTCGTCACTAACCTGGGTCTGTAGCACCAAATACCACCTGGAGG AAATTTTACGTACAGATTTTCCGTGAAAGACGAGTATGGGTTCTACTGGTATCATTCGCATTTCCGCGCATACTA CAACGATGCTATACGGGGCCCACTCATGATCCGACCAGCACCCTCTCGTCGTCGACCGTTTGAAGACATGGCTGC AAGCAGAGTTGAGCGTGAACAGCTGCTACAGGCTGAGAGGGATGCGGTATCTATCCTCCTGAATGACTGGACACA CGATCTGTCGGACACAATCTTTAGCCGGTACCTCGAAACAGGTGCCTTCCCCAACTGTGTTGACAGTATTCTGGC CAATGGCCTGGGAAGGGTAGAATGCCTGCCAAAGTATATGCTCGATGCAGGCCCGGGGTTGGGCCTGACGGACGA AGTCAATGCCACACACCACAACCCTACTGCGACAATGGCCACATCGGTAATGCAAATGCCAACGATGGCGAGAAG AATGGAAGATCCCGCCGATGACAACCCCCACGGCCAGATGTCCATGCCTCCAATGAGCACAACCAACCCGTCAGA GTCAACCATGTCCACAACGGGCGGGATGACTATGCCCAGCTCAGACACCATGGGCGAGTCCGACACCATGGGCGA GTCAATGAGGTTGGGCCCTCGGGGCTGCATGCCACCTATGATGTTCAGGCAGGGATACGATATCAACTCGCTGCC ATCAGAGACATGTGTGAACACAACATCACAACAGTTAGTGGTCAACGCAAATGTATCTCAAGGATGGCTTGCCCT CAACCTTGTGAATTCTGGAGCTGTTAGCAACCTTAAGGTCTCTCTTGACAGTCATTCAATGCATGTCTATGCTGC AGACGGACTCTATGTGACCCTGCAGGAGGTTAAGGTAAGATATCGTCTTTCCATGGTTATTAAACTACCTTCCTC TAACCTTGACAGGTTCTTGAAATCGCTCTCGGCCAACGATATTCTGTGATGATAAAGCTTGACCAGCCTGCCGGC AACTACTACCTTCGATTCGCTACTTATCCGAATGGTGATATGCAGCAGGTCTTGGAAGGCCAGGCAATAGTGTCC TATAATGTCAGTGGATCAAAGCTTCTAATCCCACATCGCTGCTATTAACACACTGGGTAGACCACCGGAAACGAT ACACAGGATATCTCGGTTGATCCAATGTCTGTTTGGATGTTGACTAACGGATCCGCTACACAAGGGGCCAATGAA CTGGTAGAATCACGTCTGGCACCGTTTGAGGGTAATAGACCTCCCACTACAGTTGCCGATGTCACTCGGTTCTTC AATATCAATCAGACCGGCATTGTCACCTGGGTTGTGGACCAGTATCCGTATACTGAACCAACGATCCCAATCATC TACGGTAACAGGTCAGATGGATGGAATTCGAACACCACCCTCCATTTACCGACGAATTCGACCGTCGATATCGTT ATGAATGTGGCAAATTCCTCGATGGATACGGTGTGACCCCCTACGCTACTTTTTACCGCGCACGTACAGTCGCTG ACATGTATTAGATGGGCCATCCAATGCACCTTCATGGCCATAAATTCTGGGTTCTAGGTTCTGGCAGTGGCTCAT TCCCTTACCAGTCGGTCGCAGAAGCGCCGTCGTCCCTTATTAACCTCGACGACCCTCCGTACAGGGATACCGCGA ATTTACCACCATCAGGATGGCTAGCAATTCGGTGAGTTTAAACCTAACCTGCAAGCAAAAATTTGTCAAGCCTAA TGGCTAATCATGCAATAGCTATATCACCGATAACCCGGGCGCATGGATACTTCATTGCCATATCCAGTGGCATAT TGTGGTCTGTCAACTCCCCTTTTCACTCTCTCCATTGGCGGGCAATCGCTTACGTTTGTCTATATAGTCTGGAAT GGCGCTGGTCTTAGTAGAGGGCGAAGATCAGCTCGATAGTTTGATCCGGCAAGGTAATAACTCAGATCCAACTAC ACCAGCCATATCCGGGACTGCACCGTCATATATTGCAAACTTTTTTGGAATTTTAGTCGCTCTCGGTACTGTGCT GAATGCACTGGTCGTGTTTTCATAG |