© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g324.t1 |
| Gene name | |
| Location | scaffold_01:822493..823490 |
| Strand | - |
| Gene length (bp) | 997 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00175 | NAD_binding_1 | Oxidoreductase NAD-binding domain | 1.2E-26 | 164 | 268 |
| PF00970 | FAD_binding_6 | Oxidoreductase FAD-binding domain | 1.4E-16 | 55 | 147 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.10 | 0.0 | 2.39 |
| 5d_25C | Five days - 25 degrees Celsius | 0.85 | 0.0 | 1.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.60 | 0.0 | 3.22 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.96 | 0.0 | 2.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.22 | 0.0 | 0.64 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.56 | 0.0 | 3.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.781870 | no |
| 3d_25C | 7d_25C | 0.602580 | no |
| 3d_25C | 7d_15C | 0.126215 | no |
| 3d_25C | 7d_30C | 0.640977 | no |
| 3d_25C | 10d_25C | 0.884308 | no |
| 5d_25C | 7d_25C | 0.374394 | no |
| 5d_25C | 7d_15C | 0.207981 | no |
| 5d_25C | 7d_30C | 0.402804 | no |
| 5d_25C | 10d_25C | 0.905648 | no |
| 7d_25C | 7d_15C | 0.083660 | no |
| 7d_25C | 7d_30C | 0.978287 | no |
| 7d_25C | 10d_25C | 0.475212 | no |
| 7d_15C | 7d_30C | 0.086230 | no |
| 7d_15C | 10d_25C | 0.169507 | no |
| 7d_30C | 10d_25C | 0.494862 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g324.t1 MFKTRFPQSITAKSASAATLLGIGAYCVQSRLISTANAESNEPPKVFSGFGFTTLRLQSTKDVNHNTKRLVFEFP DQKATSGLALTSALLTISRPEGRWFPVLRPYTPISDLNQEGQIELMVKKYPNGKASSHIHSLSPGDTLTFATALK GHAWTPNQSPQVYLIAGGAGITPIYQLAQGILNNPADKTKINLVFGVNTEQDLLLREELESFKTRFPGRFDYVYA VSHPEGRSDGFRTGYITEGLLREVVKADGDAKVFVCGPPAMEDSLVGSRCQMGILARLGFAKGQIVRF* |
| Coding | >Pro_DTO377G3_2|g324.t1 ATGTTCAAAACTCGTTTCCCCCAGTCCATAACAGCAAAATCAGCCTCGGCTGCCACTTTACTAGGCATCGGAGCT TACTGTGTCCAATCGCGTCTTATATCAACTGCCAATGCAGAGTCAAATGAACCTCCCAAAGTCTTTTCAGGATTC GGATTTACTACCTTACGCCTGCAAAGCACGAAAGATGTAAATCACAACACAAAACGGCTCGTCTTCGAGTTTCCA GATCAGAAGGCCACAAGCGGATTGGCATTAACTTCGGCACTCCTCACCATATCCCGTCCCGAAGGACGCTGGTTC CCCGTACTACGCCCATATACACCCATCAGCGATCTAAACCAAGAAGGCCAGATCGAGCTCATGGTCAAGAAATAC CCAAACGGCAAAGCGAGCAGCCACATCCACTCCCTTTCACCAGGAGACACCCTCACATTCGCAACGGCACTCAAA GGCCACGCCTGGACACCGAACCAATCCCCGCAGGTCTACCTCATAGCAGGCGGAGCAGGTATTACACCAATCTAC CAGCTAGCGCAGGGTATTCTCAATAATCCAGCCGACAAAACTAAAATCAACCTTGTCTTTGGCGTCAATACCGAG CAGGACCTGCTTCTGCGAGAAGAGCTGGAGAGCTTCAAGACGCGCTTCCCAGGTCGCTTTGACTATGTCTATGCA GTCAGTCACCCGGAGGGACGGAGTGATGGGTTCAGGACGGGGTATATTACCGAGGGGCTGTTGCGGGAGGTTGTG AAGGCCGATGGCGATGCGAAGGTCTTTGTTTGTGGGCCTCCTGCTATGGAGGATTCGTTGGTTGGATCGAGATGC CAAATGGGTATTTTGGCTAGGCTTGGGTTTGCAAAGGGTCAGATTGTTAGGTTTTAG |
| Transcript | >Pro_DTO377G3_2|g324.t1 ATGTTCAAAACTCGTTTCCCCCAGTCCATAACAGCAAAATCAGCCTCGGCTGCCACTTTACTAGGCATCGGAGCT TACTGTGTCCAATCGCGTCTTATATCAACTGCCAATGCAGAGTCAAATGAACCTCCCAAAGTCTTTTCAGGATTC GGATTTACTACCTTACGCCTGCAAAGCACGAAAGATGTAAATCACAACACAAAACGGCTCGTCTTCGAGTTTCCA GATCAGAAGGCCACAAGCGGATTGGCATTAACTTCGGCACTCCTCACCATATCCCGTCCCGAAGGACGCTGGTTC CCCGTACTACGCCCATATACACCCATCAGCGATCTAAACCAAGAAGGCCAGATCGAGCTCATGGTCAAGAAATAC CCAAACGGCAAAGCGAGCAGCCACATCCACTCCCTTTCACCAGGAGACACCCTCACATTCGCAACGGCACTCAAA GGCCACGCCTGGACACCGAACCAATCCCCGCAGGTCTACCTCATAGCAGGCGGAGCAGGTATTACACCAATCTAC CAGCTAGCGCAGGGTATTCTCAATAATCCAGCCGACAAAACTAAAATCAACCTTGTCTTTGGCGTCAATACCGAG CAGGACCTGCTTCTGCGAGAAGAGCTGGAGAGCTTCAAGACGCGCTTCCCAGGTCGCTTTGACTATGTCTATGCA GTCAGTCACCCGGAGGGACGGAGTGATGGGTTCAGGACGGGGTATATTACCGAGGGGCTGTTGCGGGAGGTTGTG AAGGCCGATGGCGATGCGAAGGTCTTTGTTTGTGGGCCTCCTGCTATGGAGGATTCGTTGGTTGGATCGAGATGC CAAATGGGTATTTTGGCTAGGCTTGGGTTTGCAAAGGGTCAGATTGTTAGGTTTTAG |
| Gene | >Pro_DTO377G3_2|g324.t1 ATGTTCAAAACTCGTTTCCCCCAGTCCATAACAGCAAAATCAGCCTCGGCTGCCACTTTACTAGGCATCGGAGCT TACTGTGTCCAATCGCGTCTTATATCAACTGCCAATGCAGAGTCAAATGAACCTCCCAAAGTCTTTTCAGGATTC GGATTTACTACCTTACGCCTGCAAAGCACGAAAGATGTAAATCACAACACAAAACGGCTCGTCTTCGAGTTTCCA GATCAGAAGGCCACAAGCGGATTGGCATTAACTTGTATGGACCCGACTTACGATCAACGTTCTATAACAGCTTAT ATACTAACATACTGCAGCGGCACTCCTCACCATATCCCGTCCCGAAGGACGCTGGTTCCCCGTACTACGCCCATA TACACCCATCAGCGATCTAAGTACGAGTAATAAACCCAAGCCCGACATAACGATAGACTAACAAAAGAGAACAAT AGACCAAGAAGGCCAGATCGAGCTCATGGTCAAGAAATACCCAAACGGCAAAGCGAGCAGCCACATCCACTCCCT TTCACCAGGAGACACCCTCACATTCGCAACGGCACTCAAAGGCCACGCCTGGACACCGAACCAATCCCCGCAGGT CTACCTCATAGCAGGCGGAGCAGGTATTACACCAATCTACCAGCTAGCGCAGGGTATTCTCAATAATCCAGCCGA CAAAACTAAAATCAACCTTGTCTTTGGCGTCAATACCGAGCAGGACCTGCTTCTGCGAGAAGAGCTGGAGAGCTT CAAGACGCGCTTCCCAGGTCGCTTTGACTATGTCTATGCAGTCAGTCACCCGGAGGGACGGAGTGATGGGTTCAG GACGGGGTATATTACCGAGGGGCTGTTGCGGGAGGTTGTGAAGGCCGATGGCGATGCGAAGGTCTTTGTTTGTGG GCCTCCTGCTATGGAGGATTCGTTGGTTGGATCGAGATGCCAAATGGGTATTTTGGCTAGGCTTGGGTTTGCAAA GGGTCAGATTGTTAGGTTTTAG |