© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3235.t1 |
| Gene name | |
| Location | scaffold_05:63108..65707 |
| Strand | - |
| Gene length (bp) | 2599 |
| Transcript length (bp) | 2064 |
| Coding sequence length (bp) | 2064 |
| Protein length (aa) | 688 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07732 | Cu-oxidase_3 | Multicopper oxidase | 1.5E-40 | 36 | 146 |
| PF07731 | Cu-oxidase_2 | Multicopper oxidase | 3.0E-36 | 527 | 644 |
| PF00394 | Cu-oxidase | Multicopper oxidase | 4.2E-17 | 174 | 433 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0005507 | copper ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.87 | 5.82 | 17.91 |
| 5d_25C | Five days - 25 degrees Celsius | 58.91 | 35.12 | 82.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 147.32 | 86.02 | 208.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 575.55 | 296.17 | 854.93 |
| 7d_15C | Seven days - 15 degrees Celsius | 22.82 | 12.57 | 33.08 |
| 7d_30C | Seven days - 30 degrees Celsius | 79.61 | 46.84 | 112.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.006000 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.000700 | yes |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.192160 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.001278 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3235.t1 MSVCRTSYAIWLALCYFVSHSNAILRTYNLTVHNDVKAPDGVSREVFLINGQLPGPLIEADEGDDLEIFVKNDLP VDTSLHWHGILQRGSPDMDGVPGVTQYPIPPGGNFTYRFSIKDQYGFFWYHSHVRAYYNDGIRGPLLIRPSPQRL RPFEKLAHSPHERDIILQTERDATSILLSDWTHELSDTIYARYFETGAFPNCVDSILANGFGRVECLPENMLQAG PNMGYEDMNQRSSSMMAMSMAKRMDMDMDMSTDASATSSQMSTGTMAMDTTVDMTMSSTSMSAMPMSATMTMSDM SPSMTSLSPRGCMPPMMFRQGYNVSSLPPETCTNTSSSLLTIPADHTSGWLALNLVNSGAVSKLHVSLDAHSMFV YAADGLYVEIQEVKVLEIEIGQRYSVMIRLDQKPGNYYLRFASYPNGDMQQVLEGQAIVSYNMSMMSSRTPMNVT VDPSTIWMLTNGSAKPDTSVLNPQLLSPFAPVNPPSAPADQTYTFTINQTDIVTWVVNDASYSEPKIPIIQGNVS DGWQANTTIHVPSNSTIDIIMRIANDSMDTMSHPMHLHGHTFWVLGSGTGSFPYDSATDAPESLINLRNPPYRDT TNLPPSGWAVIRYVTDNPGAWIFHCHIQWHMVSGMALVLVEGPDQFPALIGQSNNGTPPATSAAPMRRISSRQTA LTAAAASLMMLG* |
| Coding | >Pro_DTO377G3_2|g3235.t1 ATGTCCGTTTGCCGGACTTCGTACGCCATTTGGCTTGCACTTTGTTACTTTGTGTCTCATTCAAATGCTATTCTC CGTACATACAACTTGACGGTGCATAATGACGTTAAAGCTCCGGATGGTGTCAGCCGCGAAGTCTTTCTGATCAAT GGTCAGCTACCGGGGCCCCTAATCGAGGCAGACGAAGGCGACGATCTGGAAATCTTTGTCAAGAACGACCTCCCC GTTGATACTTCTCTTCACTGGCACGGGATTTTGCAAAGGGGTAGTCCCGATATGGATGGAGTGCCTGGTGTCACG CAGTATCCCATACCTCCTGGCGGTAACTTCACCTACAGATTCTCGATCAAAGATCAGTATGGCTTCTTCTGGTAT CATTCCCACGTTAGAGCATACTACAATGACGGCATAAGAGGGCCACTCTTGATACGACCATCTCCCCAAAGACTG CGGCCATTTGAAAAGCTTGCTCATAGCCCACACGAGCGTGATATCATTCTGCAGACGGAGAGGGACGCTACATCC ATTCTTTTGAGTGACTGGACACATGAACTTTCGGACACCATTTACGCTCGATACTTTGAGACAGGCGCTTTTCCA AATTGCGTCGACAGCATCCTTGCCAATGGATTCGGGAGGGTTGAGTGTTTACCGGAGAATATGCTCCAGGCAGGA CCCAATATGGGATATGAAGATATGAACCAGCGTTCTTCATCAATGATGGCAATGTCAATGGCGAAACGAATGGAC ATGGACATGGACATGAGCACGGACGCATCCGCCACATCTTCTCAGATGTCAACAGGTACGATGGCTATGGATACG ACCGTGGATATGACTATGTCTAGCACTTCTATGTCCGCAATGCCGATGTCAGCTACAATGACGATGTCGGACATG TCACCGTCCATGACTTCATTGAGTCCCCGTGGCTGTATGCCGCCAATGATGTTTAGGCAAGGCTACAATGTCAGT TCACTCCCACCTGAGACCTGCACCAATACTTCGTCGTCCTTGCTCACCATCCCTGCGGATCACACGAGTGGTTGG CTCGCGCTGAATCTGGTCAACTCCGGTGCAGTCAGCAAGTTACATGTCTCTCTGGATGCACACTCTATGTTTGTC TATGCTGCCGACGGATTGTATGTGGAAATACAGGAGGTGAAGGTCCTGGAAATAGAGATCGGCCAACGGTACTCA GTGATGATTCGACTTGATCAGAAACCGGGGAATTACTATCTCAGATTCGCATCATACCCCAATGGTGACATGCAA CAAGTGCTTGAAGGGCAAGCTATTGTGTCCTATAACATGAGCATGATGAGCAGCAGAACCCCAATGAACGTCACG GTCGATCCCTCAACCATTTGGATGTTGACCAACGGATCAGCCAAACCTGATACCAGCGTACTTAATCCTCAGTTG CTTTCTCCCTTCGCGCCTGTCAACCCTCCCTCAGCACCAGCAGATCAGACATACACTTTCACAATTAATCAGACC GACATTGTGACATGGGTAGTGAATGACGCCTCATACTCTGAGCCAAAAATACCAATCATCCAGGGCAACGTATCA GACGGTTGGCAGGCGAATACAACCATCCATGTGCCGTCTAACTCAACGATTGATATTATTATGAGAATTGCAAAC GATTCGATGGATACGATGAGCCATCCCATGCACCTACACGGCCACACTTTCTGGGTGCTTGGGTCCGGTACCGGC TCTTTCCCGTATGATTCCGCGACGGACGCCCCAGAATCCCTAATAAATCTTCGAAATCCTCCTTATCGTGACACA ACTAATCTTCCTCCGTCAGGATGGGCCGTGATCCGATATGTTACGGATAATCCCGGCGCGTGGATCTTTCACTGC CATATCCAGTGGCACATGGTGAGCGGCATGGCACTTGTCCTTGTTGAAGGACCGGATCAATTTCCCGCCCTGATT GGTCAGTCTAATAATGGTACCCCTCCTGCTACGTCAGCGGCGCCGATGCGTCGTATCAGCTCTCGTCAGACTGCT TTGACTGCTGCTGCTGCCAGTCTCATGATGTTGGGATGA |
| Transcript | >Pro_DTO377G3_2|g3235.t1 ATGTCCGTTTGCCGGACTTCGTACGCCATTTGGCTTGCACTTTGTTACTTTGTGTCTCATTCAAATGCTATTCTC CGTACATACAACTTGACGGTGCATAATGACGTTAAAGCTCCGGATGGTGTCAGCCGCGAAGTCTTTCTGATCAAT GGTCAGCTACCGGGGCCCCTAATCGAGGCAGACGAAGGCGACGATCTGGAAATCTTTGTCAAGAACGACCTCCCC GTTGATACTTCTCTTCACTGGCACGGGATTTTGCAAAGGGGTAGTCCCGATATGGATGGAGTGCCTGGTGTCACG CAGTATCCCATACCTCCTGGCGGTAACTTCACCTACAGATTCTCGATCAAAGATCAGTATGGCTTCTTCTGGTAT CATTCCCACGTTAGAGCATACTACAATGACGGCATAAGAGGGCCACTCTTGATACGACCATCTCCCCAAAGACTG CGGCCATTTGAAAAGCTTGCTCATAGCCCACACGAGCGTGATATCATTCTGCAGACGGAGAGGGACGCTACATCC ATTCTTTTGAGTGACTGGACACATGAACTTTCGGACACCATTTACGCTCGATACTTTGAGACAGGCGCTTTTCCA AATTGCGTCGACAGCATCCTTGCCAATGGATTCGGGAGGGTTGAGTGTTTACCGGAGAATATGCTCCAGGCAGGA CCCAATATGGGATATGAAGATATGAACCAGCGTTCTTCATCAATGATGGCAATGTCAATGGCGAAACGAATGGAC ATGGACATGGACATGAGCACGGACGCATCCGCCACATCTTCTCAGATGTCAACAGGTACGATGGCTATGGATACG ACCGTGGATATGACTATGTCTAGCACTTCTATGTCCGCAATGCCGATGTCAGCTACAATGACGATGTCGGACATG TCACCGTCCATGACTTCATTGAGTCCCCGTGGCTGTATGCCGCCAATGATGTTTAGGCAAGGCTACAATGTCAGT TCACTCCCACCTGAGACCTGCACCAATACTTCGTCGTCCTTGCTCACCATCCCTGCGGATCACACGAGTGGTTGG CTCGCGCTGAATCTGGTCAACTCCGGTGCAGTCAGCAAGTTACATGTCTCTCTGGATGCACACTCTATGTTTGTC TATGCTGCCGACGGATTGTATGTGGAAATACAGGAGGTGAAGGTCCTGGAAATAGAGATCGGCCAACGGTACTCA GTGATGATTCGACTTGATCAGAAACCGGGGAATTACTATCTCAGATTCGCATCATACCCCAATGGTGACATGCAA CAAGTGCTTGAAGGGCAAGCTATTGTGTCCTATAACATGAGCATGATGAGCAGCAGAACCCCAATGAACGTCACG GTCGATCCCTCAACCATTTGGATGTTGACCAACGGATCAGCCAAACCTGATACCAGCGTACTTAATCCTCAGTTG CTTTCTCCCTTCGCGCCTGTCAACCCTCCCTCAGCACCAGCAGATCAGACATACACTTTCACAATTAATCAGACC GACATTGTGACATGGGTAGTGAATGACGCCTCATACTCTGAGCCAAAAATACCAATCATCCAGGGCAACGTATCA GACGGTTGGCAGGCGAATACAACCATCCATGTGCCGTCTAACTCAACGATTGATATTATTATGAGAATTGCAAAC GATTCGATGGATACGATGAGCCATCCCATGCACCTACACGGCCACACTTTCTGGGTGCTTGGGTCCGGTACCGGC TCTTTCCCGTATGATTCCGCGACGGACGCCCCAGAATCCCTAATAAATCTTCGAAATCCTCCTTATCGTGACACA ACTAATCTTCCTCCGTCAGGATGGGCCGTGATCCGATATGTTACGGATAATCCCGGCGCGTGGATCTTTCACTGC CATATCCAGTGGCACATGGTGAGCGGCATGGCACTTGTCCTTGTTGAAGGACCGGATCAATTTCCCGCCCTGATT GGTCAGTCTAATAATGGTACCCCTCCTGCTACGTCAGCGGCGCCGATGCGTCGTATCAGCTCTCGTCAGACTGCT TTGACTGCTGCTGCTGCCAGTCTCATGATGTTGGGATGA |
| Gene | >Pro_DTO377G3_2|g3235.t1 ATGTCCGTTTGCCGGACTTCGTACGCCATTTGGCTTGCACTTTGTTACTTTGTGTCTCATTCAAATGCTATTCTC CGTACATACAACTTGACGGTGCATAATGACGTTAAAGCTCCGGGTACGTGGACCATGAGCGCCAAACATGGGACT TTCAGAGCTAATTCCTAAATAGATGGTGTCAGCCGCGAAGTCTTTCTGATCAATGGTCAGCTACCGGGGCCCCTA ATCGAGGCAGACGAAGGCGACGATCTGGAAATCTTTGTCAAGAACGACCTCCCCGTTGATACTTCTCTTCACTGG CACGGTAAGTCACTTCCATGAGGAAACATTTTTTTTATTAGAACCAGTGATCACTGATTGTGCCATAACAGGGAT TTTGCAAAGGGGTAGTCCCGATATGGATGGAGTGCCTGGTGTCACGCAGGTCAGTCCTTAAATATTTGACGGTAA TTTACATCCTTGTTGCTGATTCTAGACCATAGTATCCCATACCTCCTGGCGGTAACTTCACCTACAGATTCTCGA TCAAAGATCAGTATGGCTTCTTCTGGTATCATTCCCACGTTAGAGCATACTACAATGACGGCATAAGAGGGCCAC TCTTGATACGACCATCTCCCCAAAGACTGCGGCCATTTGAAAAGCTTGCTCATAGCCCACACGAGCGTGATATCA TTCTGCAGACGGAGAGGGACGCTACATCCATTCTTTTGAGTGACTGGACACATGAACTTTCGGACACCATTTACG CTCGATACTTTGAGACAGGCGCTTTTCCAAATTGCGTCGACAGCATCCTTGCCAATGGATTCGGGAGGGTTGAGT GTTTACCGGAGAATATGCTCCAGGCAGGACCCAATATGGGATATGAAGATATGAACCAGCGTTCTTCATCAATGA TGGCAATGTCAATGGCGAAACGAATGGACATGGACATGGACATGAGCACGGACGCATCCGCCACATCTTCTCAGA TGTCAACAGGTACGATGGCTATGGATACGACCGTGGATATGACTATGTCTAGCACTTCTATGTCCGCAATGCCGA TGTCAGCTACAATGACGATGTCGGACATGTCACCGTCCATGACTTCATTGAGTCCCCGTGGCTGTATGCCGCCAA TGATGTTTAGGCAAGGCTACAATGTCAGTTCACTCCCACCTGAGACCTGCACCAATACTTCGTCGTCCTTGCTCA CCATCCCTGCGGATCACACGAGTGGTTGGCTCGCGCTGAATCTGGTCAACTCCGGTGCAGTCAGCAAGTTACATG TCTCTCTGGATGCACACTCTATGTTTGTCTATGCTGCCGACGGATTGTATGTGGAAATACAGGAGGTGAAGGTGA GCATACCTTTGAAGAGTATCCGTTATATCCCCCAGCCTGGGCTCACCACATGTCATTTTAGGTCCTGGAAATAGA GATCGGCCAACGGTACTCAGTGATGATTCGACTTGATCAGAAACCGGGGAATTACTATCTCAGATTCGCATCATA CCCCAATGGTGACATGCAACAAGTGCTTGAAGGGCAAGCTATTGTGTCCTATAACGTAAGAAAATCGGCAAGCAA GTCGCGACCATATCATGCCCGTGCTGACTTTTCGTTTTCATTTTGCAGATGAGCATGATGAGCAGCAGAACCCCA ATGAACGTCACGGTCGATCCCTCAACCATTTGGATGTTGACCAACGGATCAGCCAAACCTGATACCAGCGTACTT AATCCTCAGTTGCTTTCTCCCTTCGCGCCTGTCAACCCTCCCTCAGCACCAGCAGATCAGACATACACTTTCACA ATTAATCAGACCGACATTGTGACATGGGTAGTGAATGACGCCTCATACTCTGAGCCAAAAATACCAATCATCCAG GGCAACGTATCAGACGGTTGGCAGGCGAATACAACCATCCATGTGCCGTCTAACTCAACGATTGATATTATTATG AGAATTGCAAACGATTCGATGGATACGGTAAGTCTGTTGGATTAGTGATTCCAACGACCTTTCTATGATGTGGAC AGCTGGAACTAATGGGGGATAAACTCACCGCAGATGAGCCATCCCATGCACCTACACGGCCACACTTTCTGGGTG CTTGGGTCCGGTACCGGCTCTTTCCCGTATGATTCCGCGACGGACGCCCCAGAATCCCTAATAAATCTTCGAAAT CCTCCTTATCGTGACACAACTAATCTTCCTCCGTCAGGATGGGCCGTGATCCGGTAAATCACCTGAATATTCTAC TGGCAAGACAATAGCTTACCTTTTCTTAAAAACAGATATGTTACGGATAATCCCGGCGCGTGGATCTTTCACTGC CATATCCAGTGGCACATGGTGGTGAGTACAAATGGCTAGACGGTCGTATCCTAAATAATCGCAAAAATCTTGGTC TTGCTAACATTACATTATTTTCCTTCACAAGAGCGGCATGGCACTTGTCCTTGTTGAAGGACCGGATCAATTTCC CGCCCTGATTGGTCAGTCTAATAATGGTACCCCTCCTGCTACGTCAGCGGCGCCGATGCGTCGTATCAGCTCTCG TCAGACTGCTTTGACTGCTGCTGCTGCCAGTCTCATGATGTTGGGATGA |