© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3228.t1 |
| Gene name | |
| Location | scaffold_05:42406..43201 |
| Strand | + |
| Gene length (bp) | 795 |
| Transcript length (bp) | 795 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00149 | Metallophos | Calcineurin-like phosphoesterase | 4.9E-10 | 4 | 227 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 21.98 | 9.20 | 34.76 |
| 5d_25C | Five days - 25 degrees Celsius | 19.06 | 7.44 | 30.68 |
| 7d_25C | Seven days - 25 degrees Celsius | 16.79 | 6.45 | 27.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 12.63 | 4.36 | 20.89 |
| 7d_15C | Seven days - 15 degrees Celsius | 15.19 | 5.66 | 24.71 |
| 7d_30C | Seven days - 30 degrees Celsius | 13.29 | 4.67 | 21.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.753411 | no |
| 3d_25C | 7d_25C | 0.493625 | no |
| 3d_25C | 7d_15C | 0.301800 | no |
| 3d_25C | 7d_30C | 0.147471 | no |
| 3d_25C | 10d_25C | 0.101429 | no |
| 5d_25C | 7d_25C | 0.786957 | no |
| 5d_25C | 7d_15C | 0.580240 | no |
| 5d_25C | 7d_30C | 0.348766 | no |
| 5d_25C | 10d_25C | 0.272556 | no |
| 7d_25C | 7d_15C | 0.833430 | no |
| 7d_25C | 7d_30C | 0.584543 | no |
| 7d_25C | 10d_25C | 0.481554 | no |
| 7d_15C | 7d_30C | 0.776501 | no |
| 7d_15C | 10d_25C | 0.672332 | no |
| 7d_30C | 10d_25C | 0.922694 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3228.t1 MFQIISDLHLESPAAYDVFEVNPKAPYLALLGDIGYVKDEGLFHFLRRQLEVFRIVFLVMGNHEAYHSSWSETKS AVNKFKTRIDDTRGSSETLGKLVILDQTRYDISPGITVLGCTLFSRVAQAQKESVNFGLNDFYYIDDWTIEAHQD AHHADLVWLNQEIEHISRSEPDRKVVVFTHFCPSTHAMVVDPRHRNSKISSAFMTDLSSEPCWENGVVKLWAFGH THFNCDFQDLKTGKTVTSNQRGYYFTQSEGFDCEKTVEI* |
| Coding | >Pro_DTO377G3_2|g3228.t1 ATGTTCCAGATTATTTCTGACCTGCACCTGGAATCTCCTGCTGCATATGACGTCTTCGAAGTCAACCCCAAGGCA CCATATTTAGCCCTACTCGGCGACATTGGCTATGTCAAAGACGAAGGCTTGTTCCACTTCCTGCGTAGGCAGCTG GAAGTGTTCCGCATCGTTTTTTTGGTGATGGGTAATCACGAAGCGTATCACAGCAGCTGGTCTGAGACAAAATCC GCCGTCAACAAGTTCAAAACGAGAATTGACGACACTCGAGGATCCAGCGAGACGCTCGGTAAACTTGTCATTCTC GATCAAACGCGCTACGACATTTCACCTGGGATCACCGTCCTCGGATGTACTTTGTTCTCGCGGGTGGCCCAAGCA CAAAAAGAAAGCGTTAATTTCGGTCTGAATGACTTCTATTACATTGATGATTGGACCATCGAAGCCCATCAAGAT GCGCACCATGCCGATCTAGTGTGGCTGAACCAAGAAATTGAACATATTTCGCGCTCGGAGCCTGATCGTAAGGTT GTCGTGTTTACTCATTTCTGCCCATCAACCCACGCTATGGTTGTCGATCCCAGACATAGGAACAGCAAAATCTCC TCAGCTTTCATGACCGACCTATCAAGCGAGCCTTGTTGGGAAAATGGGGTTGTCAAACTTTGGGCTTTTGGCCAC ACGCATTTCAATTGTGACTTCCAAGACTTGAAAACTGGGAAAACAGTGACCTCAAACCAAAGAGGTTATTACTTC ACTCAGTCTGAAGGATTTGATTGTGAGAAGACGGTTGAAATCTAG |
| Transcript | >Pro_DTO377G3_2|g3228.t1 ATGTTCCAGATTATTTCTGACCTGCACCTGGAATCTCCTGCTGCATATGACGTCTTCGAAGTCAACCCCAAGGCA CCATATTTAGCCCTACTCGGCGACATTGGCTATGTCAAAGACGAAGGCTTGTTCCACTTCCTGCGTAGGCAGCTG GAAGTGTTCCGCATCGTTTTTTTGGTGATGGGTAATCACGAAGCGTATCACAGCAGCTGGTCTGAGACAAAATCC GCCGTCAACAAGTTCAAAACGAGAATTGACGACACTCGAGGATCCAGCGAGACGCTCGGTAAACTTGTCATTCTC GATCAAACGCGCTACGACATTTCACCTGGGATCACCGTCCTCGGATGTACTTTGTTCTCGCGGGTGGCCCAAGCA CAAAAAGAAAGCGTTAATTTCGGTCTGAATGACTTCTATTACATTGATGATTGGACCATCGAAGCCCATCAAGAT GCGCACCATGCCGATCTAGTGTGGCTGAACCAAGAAATTGAACATATTTCGCGCTCGGAGCCTGATCGTAAGGTT GTCGTGTTTACTCATTTCTGCCCATCAACCCACGCTATGGTTGTCGATCCCAGACATAGGAACAGCAAAATCTCC TCAGCTTTCATGACCGACCTATCAAGCGAGCCTTGTTGGGAAAATGGGGTTGTCAAACTTTGGGCTTTTGGCCAC ACGCATTTCAATTGTGACTTCCAAGACTTGAAAACTGGGAAAACAGTGACCTCAAACCAAAGAGGTTATTACTTC ACTCAGTCTGAAGGATTTGATTGTGAGAAGACGGTTGAAATCTAG |
| Gene | >Pro_DTO377G3_2|g3228.t1 ATGTTCCAGATTATTTCTGACCTGCACCTGGAATCTCCTGCTGCATATGACGTCTTCGAAGTCAACCCCAAGGCA CCATATTTAGCCCTACTCGGCGACATTGGCTATGTCAAAGACGAAGGCTTGTTCCACTTCCTGCGTAGGCAGCTG GAAGTGTTCCGCATCGTTTTTTTGGTGATGGGTAATCACGAAGCGTATCACAGCAGCTGGTCTGAGACAAAATCC GCCGTCAACAAGTTCAAAACGAGAATTGACGACACTCGAGGATCCAGCGAGACGCTCGGTAAACTTGTCATTCTC GATCAAACGCGCTACGACATTTCACCTGGGATCACCGTCCTCGGATGTACTTTGTTCTCGCGGGTGGCCCAAGCA CAAAAAGAAAGCGTTAATTTCGGTCTGAATGACTTCTATTACATTGATGATTGGACCATCGAAGCCCATCAAGAT GCGCACCATGCCGATCTAGTGTGGCTGAACCAAGAAATTGAACATATTTCGCGCTCGGAGCCTGATCGTAAGGTT GTCGTGTTTACTCATTTCTGCCCATCAACCCACGCTATGGTTGTCGATCCCAGACATAGGAACAGCAAAATCTCC TCAGCTTTCATGACCGACCTATCAAGCGAGCCTTGTTGGGAAAATGGGGTTGTCAAACTTTGGGCTTTTGGCCAC ACGCATTTCAATTGTGACTTCCAAGACTTGAAAACTGGGAAAACAGTGACCTCAAACCAAAGAGGTTATTACTTC ACTCAGTCTGAAGGATTTGATTGTGAGAAGACGGTTGAAATCTAG |