Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3215.t1
Gene name
Locationscaffold_04:990189..991745
Strand-
Gene length (bp)1556
Transcript length (bp)1446
Coding sequence length (bp)1446
Protein length (aa) 482

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03849 Tfb2 Transcription factor Tfb2 4.6E-136 10 383
PF18307 Tfb2_C Transcription factor Tfb2 (p52) C-terminal domain 1.8E-23 409 474

GO

GO Term Description Terminal node
GO:0006289 nucleotide-excision repair Yes
GO:0000439 transcription factor TFIIH core complex Yes
GO:0001671 ATPase activator activity Yes
GO:1901360 organic cyclic compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044238 primary metabolic process No
GO:0044798 nuclear transcription factor complex No
GO:0006950 response to stress No
GO:0033554 cellular response to stress No
GO:0044260 cellular macromolecule metabolic process No
GO:0005575 cellular_component No
GO:0006281 DNA repair No
GO:0098772 molecular function regulator No
GO:0044446 intracellular organelle part No
GO:0071704 organic substance metabolic process No
GO:0060589 nucleoside-triphosphatase regulator activity No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0044464 cell part No
GO:0044428 nuclear part No
GO:0044237 cellular metabolic process No
GO:0030234 enzyme regulator activity No
GO:0050896 response to stimulus No
GO:0044424 intracellular part No
GO:0006259 DNA metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0060590 ATPase regulator activity No
GO:0044422 organelle part No
GO:0090575 RNA polymerase II transcription factor complex No
GO:0006974 cellular response to DNA damage stimulus No
GO:0006807 nitrogen compound metabolic process No
GO:0003674 molecular_function No
GO:0051716 cellular response to stimulus No
GO:0008150 biological_process No
GO:0008047 enzyme activator activity No
GO:0032991 protein-containing complex No
GO:0008152 metabolic process No
GO:0005667 transcription factor complex No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 62 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3215.t1
MASATSRPLEYLEGLPGTTFYKLYQQPSTALAIFRRMLPDLAKCFVMALLYLKDPLPTADLEVWVNAESKKERDN
ALSILGRLHILSTTLTGENVRAYMVTNPFAASLRQALMGAEDSHSFGVFSQAPEQTPTSIADLDEYARRQWEGVM
GYMVGTSALMSGQRDTVNLSKGVKQLLQAGHLVEIRGNRVDITKDGFGFVLQDVNTQVWHILILYVESAEAIGMD
SVEVLSFLFLLSSLELGSSYDKSHMTPNQLRTLADLADFGIVYQEDADATRFYPTRLATTLTSDSSALSNPVTGS
LTGPVGPSGGSSSGFIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSVRRAIEMGITADQIIS
YLLSHAHPQLRKHSAAQSNGKGVPASVLPPTVTDQIRLWQLERDRLRATAGFLFKDFTSLTEYQAPCQYAAEIGV
LVWKSDRKRMFFVTRHEQVAAFLRSQKVGGK*
Coding >Pro_DTO377G3_2|g3215.t1
ATGGCGAGTGCAACATCCCGTCCTCTGGAGTACCTGGAGGGACTCCCCGGGACGACTTTCTATAAGCTATACCAA
CAACCATCCACAGCCCTTGCGATCTTCCGGCGCATGCTGCCCGATCTGGCAAAATGCTTTGTGATGGCTCTACTC
TATCTGAAAGACCCTCTCCCAACTGCTGATCTGGAAGTTTGGGTCAACGCAGAGAGCAAGAAGGAACGAGATAAT
GCGCTTTCAATATTGGGTCGACTTCACATTCTTTCTACGACCCTCACAGGTGAAAACGTCCGTGCGTACATGGTC
ACCAACCCGTTCGCTGCTTCGCTTCGACAAGCTCTGATGGGTGCCGAGGACTCTCATTCTTTCGGTGTATTCTCC
CAAGCTCCAGAACAAACCCCAACCTCGATTGCCGATTTGGATGAATATGCTAGACGACAGTGGGAAGGTGTTATG
GGATACATGGTTGGAACGAGTGCCTTGATGAGTGGACAGCGTGACACGGTCAATTTGAGCAAGGGTGTCAAACAG
CTTCTCCAAGCGGGACACTTGGTTGAGATCCGAGGTAACCGTGTCGATATCACCAAAGACGGGTTCGGATTTGTG
CTTCAGGATGTGAATACCCAGGTCTGGCATATCTTGATTCTGTATGTCGAGAGCGCCGAGGCCATCGGCATGGAT
AGCGTCGAGGTTCTCTCGTTCCTATTCCTCCTGAGCAGTCTAGAACTCGGATCTTCTTACGACAAGAGCCACATG
ACACCCAACCAACTTCGCACTCTCGCGGACCTGGCTGATTTTGGTATTGTCTACCAGGAAGATGCCGACGCAACA
CGCTTTTATCCCACCCGTCTGGCAACTACACTTACATCCGACTCGAGCGCTCTGAGCAATCCTGTCACAGGATCC
CTCACTGGGCCAGTGGGGCCGTCTGGTGGTTCTAGCTCCGGTTTCATCATCATCGAAACTAACTATCGGCTCTAC
GCCTACACCTCATCACCCCTACAAATATCTCTCATCTCCCTTTTCACAAACCTCAAATACCGCTTCCCCAATCTG
GTCACTGGCAAAATCACCAGGCAGTCTGTCCGCCGAGCAATCGAGATGGGAATCACGGCCGATCAAATTATCTCT
TACCTATTATCGCACGCGCACCCACAGCTGCGGAAACACAGCGCTGCTCAATCCAACGGCAAGGGTGTCCCGGCA
TCTGTGCTCCCGCCTACTGTGACAGATCAGATCAGATTATGGCAGTTGGAGCGGGACCGTCTCCGGGCTACGGCG
GGCTTTTTGTTCAAGGATTTCACCAGCTTGACTGAATACCAGGCTCCCTGCCAGTATGCCGCGGAGATTGGCGTG
CTGGTTTGGAAGTCAGATCGGAAGCGCATGTTTTTTGTCACAAGACATGAGCAGGTGGCTGCATTTTTGCGGAGT
CAAAAGGTAGGCGGGAAGTAA
Transcript >Pro_DTO377G3_2|g3215.t1
ATGGCGAGTGCAACATCCCGTCCTCTGGAGTACCTGGAGGGACTCCCCGGGACGACTTTCTATAAGCTATACCAA
CAACCATCCACAGCCCTTGCGATCTTCCGGCGCATGCTGCCCGATCTGGCAAAATGCTTTGTGATGGCTCTACTC
TATCTGAAAGACCCTCTCCCAACTGCTGATCTGGAAGTTTGGGTCAACGCAGAGAGCAAGAAGGAACGAGATAAT
GCGCTTTCAATATTGGGTCGACTTCACATTCTTTCTACGACCCTCACAGGTGAAAACGTCCGTGCGTACATGGTC
ACCAACCCGTTCGCTGCTTCGCTTCGACAAGCTCTGATGGGTGCCGAGGACTCTCATTCTTTCGGTGTATTCTCC
CAAGCTCCAGAACAAACCCCAACCTCGATTGCCGATTTGGATGAATATGCTAGACGACAGTGGGAAGGTGTTATG
GGATACATGGTTGGAACGAGTGCCTTGATGAGTGGACAGCGTGACACGGTCAATTTGAGCAAGGGTGTCAAACAG
CTTCTCCAAGCGGGACACTTGGTTGAGATCCGAGGTAACCGTGTCGATATCACCAAAGACGGGTTCGGATTTGTG
CTTCAGGATGTGAATACCCAGGTCTGGCATATCTTGATTCTGTATGTCGAGAGCGCCGAGGCCATCGGCATGGAT
AGCGTCGAGGTTCTCTCGTTCCTATTCCTCCTGAGCAGTCTAGAACTCGGATCTTCTTACGACAAGAGCCACATG
ACACCCAACCAACTTCGCACTCTCGCGGACCTGGCTGATTTTGGTATTGTCTACCAGGAAGATGCCGACGCAACA
CGCTTTTATCCCACCCGTCTGGCAACTACACTTACATCCGACTCGAGCGCTCTGAGCAATCCTGTCACAGGATCC
CTCACTGGGCCAGTGGGGCCGTCTGGTGGTTCTAGCTCCGGTTTCATCATCATCGAAACTAACTATCGGCTCTAC
GCCTACACCTCATCACCCCTACAAATATCTCTCATCTCCCTTTTCACAAACCTCAAATACCGCTTCCCCAATCTG
GTCACTGGCAAAATCACCAGGCAGTCTGTCCGCCGAGCAATCGAGATGGGAATCACGGCCGATCAAATTATCTCT
TACCTATTATCGCACGCGCACCCACAGCTGCGGAAACACAGCGCTGCTCAATCCAACGGCAAGGGTGTCCCGGCA
TCTGTGCTCCCGCCTACTGTGACAGATCAGATCAGATTATGGCAGTTGGAGCGGGACCGTCTCCGGGCTACGGCG
GGCTTTTTGTTCAAGGATTTCACCAGCTTGACTGAATACCAGGCTCCCTGCCAGTATGCCGCGGAGATTGGCGTG
CTGGTTTGGAAGTCAGATCGGAAGCGCATGTTTTTTGTCACAAGACATGAGCAGGTGGCTGCATTTTTGCGGAGT
CAAAAGGTAGGCGGGAAGTAA
Gene >Pro_DTO377G3_2|g3215.t1
ATGGCGAGTGCAACATCCCGTCCTCTGGAGTACCTGGAGGGACTCCCCGGGACGACTTTCTATAAGCTATACCAA
CAACCATCCACAGCCCTTGCGATCTTCCGGCGCATGCTGCCCGATCTGGGTACATTAAGCTTACTCACACGGAAG
GGAACGTTGTGCTAACACTGAATATAGCAAAATGCTTTGTGATGGCTCTACTCTATCTGAAAGACCCTCTCCCAA
CTGCTGATCTGGAAGTTTGGGTCAACGCAGAGAGCAAGAAGTGAGTGGCTTATCTGACAGGTCTTGCTCTAGCCA
TTACTGACAGTGTTCACACAAGGGAACGAGATAATGCGCTTTCAATATTGGGTCGACTTCACATTCTTTCTACGA
CCCTCACAGGTGAAAACGTCCGTGCGTACATGGTCACCAACCCGTTCGCTGCTTCGCTTCGACAAGCTCTGATGG
GTGCCGAGGACTCTCATTCTTTCGGTGTATTCTCCCAAGCTCCAGAACAAACCCCAACCTCGATTGCCGATTTGG
ATGAATATGCTAGACGACAGTGGGAAGGTGTTATGGGATACATGGTTGGAACGAGTGCCTTGATGAGTGGACAGC
GTGACACGGTCAATTTGAGCAAGGGTGTCAAACAGCTTCTCCAAGCGGGACACTTGGTTGAGATCCGAGGTAACC
GTGTCGATATCACCAAAGACGGGTTCGGATTTGTGCTTCAGGATGTGAATACCCAGGTCTGGCATATCTTGATTC
TGTATGTCGAGAGCGCCGAGGCCATCGGCATGGATAGCGTCGAGGTTCTCTCGTTCCTATTCCTCCTGAGCAGTC
TAGAACTCGGATCTTCTTACGACAAGAGCCACATGACACCCAACCAACTTCGCACTCTCGCGGACCTGGCTGATT
TTGGTATTGTCTACCAGGAAGATGCCGACGCAACACGCTTTTATCCCACCCGTCTGGCAACTACACTTACATCCG
ACTCGAGCGCTCTGAGCAATCCTGTCACAGGATCCCTCACTGGGCCAGTGGGGCCGTCTGGTGGTTCTAGCTCCG
GTTTCATCATCATCGAAACTAACTATCGGCTCTACGCCTACACCTCATCACCCCTACAAATATCTCTCATCTCCC
TTTTCACAAACCTCAAATACCGCTTCCCCAATCTGGTCACTGGCAAAATCACCAGGCAGTCTGTCCGCCGAGCAA
TCGAGATGGGAATCACGGCCGATCAAATTATCTCTTACCTATTATCGCACGCGCACCCACAGCTGCGGAAACACA
GCGCTGCTCAATCCAACGGCAAGGGTGTCCCGGCATCTGTGCTCCCGCCTACTGTGACAGATCAGATCAGATTAT
GGCAGTTGGAGCGGGACCGTCTCCGGGCTACGGCGGGCTTTTTGTTCAAGGATTTCACCAGCTTGACTGAATACC
AGGCTCCCTGCCAGTATGCCGCGGAGATTGGCGTGCTGGTTTGGAAGTCAGATCGGAAGCGCATGTTTTTTGTCA
CAAGACATGAGCAGGTGGCTGCATTTTTGCGGAGTCAAAAGGTAGGCGGGAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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