© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3203.t1 |
| Gene name | |
| Location | scaffold_04:961631..962849 |
| Strand | - |
| Gene length (bp) | 1218 |
| Transcript length (bp) | 1158 |
| Coding sequence length (bp) | 1158 |
| Protein length (aa) | 386 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04389 | Peptidase_M28 | Peptidase family M28 | 1.3E-29 | 168 | 376 |
| PF01546 | Peptidase_M20 | Peptidase family M20/M25/M40 | 6.0E-08 | 196 | 374 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 15 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 302.96 | 181.60 | 424.32 |
| 5d_25C | Five days - 25 degrees Celsius | 272.51 | 163.53 | 381.49 |
| 7d_25C | Seven days - 25 degrees Celsius | 240.75 | 145.13 | 336.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 211.48 | 128.96 | 294.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 500.29 | 283.25 | 717.34 |
| 7d_30C | Seven days - 30 degrees Celsius | 217.28 | 132.18 | 302.37 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.715125 | no |
| 3d_25C | 7d_25C | 0.340172 | no |
| 3d_25C | 7d_15C | 0.018838 | yes |
| 3d_25C | 7d_30C | 0.128377 | no |
| 3d_25C | 10d_25C | 0.094810 | no |
| 5d_25C | 7d_25C | 0.657137 | no |
| 5d_25C | 7d_15C | 0.004840 | yes |
| 5d_25C | 7d_30C | 0.348389 | no |
| 5d_25C | 10d_25C | 0.278780 | no |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.724067 | no |
| 7d_25C | 10d_25C | 0.638557 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.937815 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3203.t1 MKFLTLALSATASAMVIVNPEQQPLAPSIVQNPQSKSLIELAPYRTRWVTEEEKWSLKLDGVNFIDVTDEYQSGS YGTLHTTRVVHYPGAMEHSHEILPLTETLDKSNMRSNLEHFTSFHTRYYKSQTGIESATWLFDQVTAAVHESGAS DHGATVERFAHPWGQFSIIARIPGQTDNTVVLGSHQDSINLFLPSILAAPGADDDGSGTVTILEALRALLRSETI THGKARNTIEFHWYSAEEGGLLGSQAVYANYKKNQRNVKAMLQQDMTGYVQGTLDAGEKESVGVIIDYVDQGLTA FIKEVITTYCDVPYVETKCGYACSDHASASRYGYPSAFVIESQFENSDKRIHTTEDKIEYLSFDHMLQHAKMSLA FAYELAFASF* |
| Coding | >Pro_DTO377G3_2|g3203.t1 ATGAAGTTCCTCACTCTTGCGCTCAGCGCAACGGCATCTGCCATGGTCATAGTCAACCCGGAGCAACAACCTCTA GCACCTTCAATTGTTCAAAACCCTCAGTCGAAGTCTCTGATTGAACTGGCCCCATACCGAACCCGATGGGTAACT GAAGAAGAAAAATGGTCGCTCAAGCTGGACGGAGTGAACTTCATCGATGTCACCGATGAATACCAATCAGGCTCC TACGGAACCCTCCACACCACGCGGGTCGTCCACTATCCAGGGGCTATGGAGCACTCACACGAAATTCTGCCTTTG ACCGAAACTCTCGACAAGAGTAACATGAGAAGCAACCTGGAACACTTCACATCCTTCCACACGCGCTACTACAAG TCGCAAACGGGAATCGAGTCAGCAACCTGGCTATTTGACCAAGTGACTGCTGCAGTGCACGAGTCTGGCGCCAGT GACCACGGTGCAACCGTCGAGCGCTTCGCTCATCCCTGGGGTCAGTTCAGCATTATTGCGCGCATTCCCGGTCAG ACGGATAACACCGTCGTCCTCGGTTCCCACCAGGATAGCATCAACTTGTTCCTGCCTTCGATCCTGGCTGCCCCG GGCGCGGATGATGACGGAAGTGGAACAGTTACTATCCTCGAAGCTCTTCGCGCCCTGCTGCGGTCGGAGACTATA ACCCACGGAAAAGCCCGTAACACTATCGAGTTCCACTGGTACTCTGCCGAGGAAGGTGGTTTACTCGGATCACAG GCTGTATATGCTAATTACAAGAAGAACCAGCGGAACGTCAAGGCCATGCTCCAGCAAGACATGACTGGGTATGTT CAGGGTACTCTTGATGCTGGCGAGAAGGAGTCTGTGGGTGTTATTATCGACTACGTCGACCAGGGCCTTACTGCG TTCATTAAGGAGGTTATCACCACGTACTGCGATGTGCCCTATGTCGAGACAAAGTGTGGCTATGCATGCTCTGAT CATGCTTCTGCTAGTCGGTACGGATACCCCTCGGCATTTGTGATCGAGTCTCAGTTCGAGAACTCCGATAAGAGG ATCCACACTACCGAGGACAAGATCGAGTATTTGAGCTTCGATCATATGCTGCAGCATGCAAAGATGAGCTTGGCT TTTGCTTACGAGCTGGCATTTGCTTCCTTCTGA |
| Transcript | >Pro_DTO377G3_2|g3203.t1 ATGAAGTTCCTCACTCTTGCGCTCAGCGCAACGGCATCTGCCATGGTCATAGTCAACCCGGAGCAACAACCTCTA GCACCTTCAATTGTTCAAAACCCTCAGTCGAAGTCTCTGATTGAACTGGCCCCATACCGAACCCGATGGGTAACT GAAGAAGAAAAATGGTCGCTCAAGCTGGACGGAGTGAACTTCATCGATGTCACCGATGAATACCAATCAGGCTCC TACGGAACCCTCCACACCACGCGGGTCGTCCACTATCCAGGGGCTATGGAGCACTCACACGAAATTCTGCCTTTG ACCGAAACTCTCGACAAGAGTAACATGAGAAGCAACCTGGAACACTTCACATCCTTCCACACGCGCTACTACAAG TCGCAAACGGGAATCGAGTCAGCAACCTGGCTATTTGACCAAGTGACTGCTGCAGTGCACGAGTCTGGCGCCAGT GACCACGGTGCAACCGTCGAGCGCTTCGCTCATCCCTGGGGTCAGTTCAGCATTATTGCGCGCATTCCCGGTCAG ACGGATAACACCGTCGTCCTCGGTTCCCACCAGGATAGCATCAACTTGTTCCTGCCTTCGATCCTGGCTGCCCCG GGCGCGGATGATGACGGAAGTGGAACAGTTACTATCCTCGAAGCTCTTCGCGCCCTGCTGCGGTCGGAGACTATA ACCCACGGAAAAGCCCGTAACACTATCGAGTTCCACTGGTACTCTGCCGAGGAAGGTGGTTTACTCGGATCACAG GCTGTATATGCTAATTACAAGAAGAACCAGCGGAACGTCAAGGCCATGCTCCAGCAAGACATGACTGGGTATGTT CAGGGTACTCTTGATGCTGGCGAGAAGGAGTCTGTGGGTGTTATTATCGACTACGTCGACCAGGGCCTTACTGCG TTCATTAAGGAGGTTATCACCACGTACTGCGATGTGCCCTATGTCGAGACAAAGTGTGGCTATGCATGCTCTGAT CATGCTTCTGCTAGTCGGTACGGATACCCCTCGGCATTTGTGATCGAGTCTCAGTTCGAGAACTCCGATAAGAGG ATCCACACTACCGAGGACAAGATCGAGTATTTGAGCTTCGATCATATGCTGCAGCATGCAAAGATGAGCTTGGCT TTTGCTTACGAGCTGGCATTTGCTTCCTTCTGA |
| Gene | >Pro_DTO377G3_2|g3203.t1 ATGAAGTTCCTCACTCTTGCGCTCAGCGCAACGGCATCTGCCATGGTCATAGTCAACCCGGAGCAACAACCTCTA GCACCTTCAATTGTTCAAAACCCTCAGTCGAAGTCTCTGATTGAACTGGCCCCATACCGAACCCGATGGGTAACT GAAGAAGAAAAATGGTCGCTCAAGCTGGTAAGCCATTTTTTTTTTTTTGATTCGAAACTCAATGACATAGTACTA ACCCCCGACTAGGACGGAGTGAACTTCATCGATGTCACCGATGAATACCAATCAGGCTCCTACGGAACCCTCCAC ACCACGCGGGTCGTCCACTATCCAGGGGCTATGGAGCACTCACACGAAATTCTGCCTTTGACCGAAACTCTCGAC AAGAGTAACATGAGAAGCAACCTGGAACACTTCACATCCTTCCACACGCGCTACTACAAGTCGCAAACGGGAATC GAGTCAGCAACCTGGCTATTTGACCAAGTGACTGCTGCAGTGCACGAGTCTGGCGCCAGTGACCACGGTGCAACC GTCGAGCGCTTCGCTCATCCCTGGGGTCAGTTCAGCATTATTGCGCGCATTCCCGGTCAGACGGATAACACCGTC GTCCTCGGTTCCCACCAGGATAGCATCAACTTGTTCCTGCCTTCGATCCTGGCTGCCCCGGGCGCGGATGATGAC GGAAGTGGAACAGTTACTATCCTCGAAGCTCTTCGCGCCCTGCTGCGGTCGGAGACTATAACCCACGGAAAAGCC CGTAACACTATCGAGTTCCACTGGTACTCTGCCGAGGAAGGTGGTTTACTCGGATCACAGGCTGTATATGCTAAT TACAAGAAGAACCAGCGGAACGTCAAGGCCATGCTCCAGCAAGACATGACTGGGTATGTTCAGGGTACTCTTGAT GCTGGCGAGAAGGAGTCTGTGGGTGTTATTATCGACTACGTCGACCAGGGCCTTACTGCGTTCATTAAGGAGGTT ATCACCACGTACTGCGATGTGCCCTATGTCGAGACAAAGTGTGGCTATGCATGCTCTGATCATGCTTCTGCTAGT CGGTACGGATACCCCTCGGCATTTGTGATCGAGTCTCAGTTCGAGAACTCCGATAAGAGGATCCACACTACCGAG GACAAGATCGAGTATTTGAGCTTCGATCATATGCTGCAGCATGCAAAGATGAGCTTGGCTTTTGCTTACGAGCTG GCATTTGCTTCCTTCTGA |