© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3198.t1 |
| Gene name | |
| Location | scaffold_04:950178..951617 |
| Strand | - |
| Gene length (bp) | 1439 |
| Transcript length (bp) | 1329 |
| Coding sequence length (bp) | 1329 |
| Protein length (aa) | 443 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.1E-23 | 44 | 329 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 43 | 65 | 22 |
| 2 | 80 | 102 | 22 |
| 3 | 109 | 128 | 19 |
| 4 | 132 | 154 | 22 |
| 5 | 166 | 188 | 22 |
| 6 | 198 | 220 | 22 |
| 7 | 246 | 268 | 22 |
| 8 | 308 | 330 | 22 |
| 9 | 337 | 359 | 22 |
| 10 | 410 | 432 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.42 | 0.0 | 0.97 |
| 5d_25C | Five days - 25 degrees Celsius | 0.49 | 0.0 | 1.13 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.44 | 0.0 | 0.99 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.28 | 0.0 | 0.69 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.35 | 0.0 | 0.80 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.93 | 0.0 | 1.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.275557 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.396456 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.268759 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.157617 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.134928 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3198.t1 MLSEKGKTQPEVTDLAHITEDEESSGIHSTFAVKSKVYSCLQVLGAFFIFFNVWGLNLAFGTFQSYYALTYIPSS TSSDIAWIGTIQSWLLIVGGLLSGPLFDLGYNQSMILVGSTLGVVGIMMLSLAHDYYAIFLSQGVCMGLGFGLLY VPAIALVSRSFTTRRAVALGISSSGAPVGGIIYTTMFNQLISKVGFAWTVRLVAFLMLALFIAAAIMLLWPERHA VKVKNTQRRSLIDLRALKDLPFWSFAIGNFFLYLGYITPFYYIPTYAETKLGTSRSMASNILMISQASSVIGRVV LTLFAHYYGSMIAWIICGILSGVLCICWISADSLARFVLFAAFYGGISGALIPLPPSVFTHVCPDPKSLGTWLGM AQSLSSFASLVGPPIAGALASIGADGSADLNYLGIQLFSGIVMCFGAFQLIFLWYLLYKKRGKTGLF* |
| Coding | >Pro_DTO377G3_2|g3198.t1 ATGTTATCGGAAAAAGGCAAGACGCAGCCCGAGGTCACAGATCTGGCACATATCACGGAAGATGAAGAGTCATCT GGAATACACTCTACCTTTGCTGTAAAAAGTAAAGTGTATAGCTGTCTCCAAGTTCTCGGTGCTTTCTTTATATTC TTCAATGTCTGGGGCCTCAACCTCGCATTTGGGACATTCCAAAGCTACTATGCACTCACCTATATCCCATCATCG ACATCATCTGACATCGCCTGGATTGGAACGATTCAATCCTGGCTCCTAATCGTCGGCGGTCTACTATCCGGCCCA CTTTTCGACCTTGGCTACAACCAGAGCATGATTCTCGTCGGCAGTACCCTAGGTGTAGTCGGCATAATGATGCTC AGTCTTGCACATGACTACTACGCCATATTCCTAAGCCAGGGGGTCTGCATGGGCCTCGGATTCGGACTGCTTTAT GTCCCTGCTATTGCATTGGTCAGCCGTTCTTTCACAACAAGAAGGGCTGTTGCGCTAGGTATTTCGAGTAGCGGT GCGCCTGTCGGGGGTATTATCTATACAACGATGTTCAACCAGCTTATATCAAAGGTTGGGTTCGCCTGGACCGTC CGCCTTGTGGCGTTCTTGATGCTGGCGCTGTTCATCGCGGCTGCTATTATGCTTTTGTGGCCGGAGAGACATGCA GTGAAGGTTAAAAATACCCAGCGCAGGAGCTTGATTGATTTGCGCGCATTGAAGGATTTGCCTTTTTGGAGCTTT GCTATCGGGAACTTTTTTCTTTACCTTGGTTATATCACGCCTTTCTATTACATTCCGACTTACGCGGAGACAAAA CTAGGTACATCGCGCTCAATGGCCTCTAATATCTTGATGATTTCCCAGGCTTCTTCGGTTATTGGCCGTGTTGTC TTGACTTTGTTCGCTCATTACTATGGGTCGATGATTGCTTGGATCATTTGCGGTATACTCTCAGGCGTTCTGTGT ATTTGTTGGATCAGTGCAGACAGCCTTGCCCGGTTTGTTCTTTTTGCTGCCTTCTATGGTGGTATCTCCGGGGCT TTGATTCCTCTGCCGCCGAGCGTTTTCACTCACGTCTGTCCCGATCCCAAGAGTCTTGGAACTTGGCTTGGAATG GCGCAAAGCTTGAGTAGCTTTGCGAGTCTTGTGGGACCACCAATAGCAGGTGCGCTCGCTTCAATTGGCGCCGAT GGTAGTGCGGATTTGAACTACTTGGGTATTCAATTGTTTAGTGGGATAGTCATGTGTTTTGGCGCATTCCAGCTG ATCTTTTTATGGTATTTGCTGTACAAAAAGAGGGGCAAAACTGGTTTATTTTAA |
| Transcript | >Pro_DTO377G3_2|g3198.t1 ATGTTATCGGAAAAAGGCAAGACGCAGCCCGAGGTCACAGATCTGGCACATATCACGGAAGATGAAGAGTCATCT GGAATACACTCTACCTTTGCTGTAAAAAGTAAAGTGTATAGCTGTCTCCAAGTTCTCGGTGCTTTCTTTATATTC TTCAATGTCTGGGGCCTCAACCTCGCATTTGGGACATTCCAAAGCTACTATGCACTCACCTATATCCCATCATCG ACATCATCTGACATCGCCTGGATTGGAACGATTCAATCCTGGCTCCTAATCGTCGGCGGTCTACTATCCGGCCCA CTTTTCGACCTTGGCTACAACCAGAGCATGATTCTCGTCGGCAGTACCCTAGGTGTAGTCGGCATAATGATGCTC AGTCTTGCACATGACTACTACGCCATATTCCTAAGCCAGGGGGTCTGCATGGGCCTCGGATTCGGACTGCTTTAT GTCCCTGCTATTGCATTGGTCAGCCGTTCTTTCACAACAAGAAGGGCTGTTGCGCTAGGTATTTCGAGTAGCGGT GCGCCTGTCGGGGGTATTATCTATACAACGATGTTCAACCAGCTTATATCAAAGGTTGGGTTCGCCTGGACCGTC CGCCTTGTGGCGTTCTTGATGCTGGCGCTGTTCATCGCGGCTGCTATTATGCTTTTGTGGCCGGAGAGACATGCA GTGAAGGTTAAAAATACCCAGCGCAGGAGCTTGATTGATTTGCGCGCATTGAAGGATTTGCCTTTTTGGAGCTTT GCTATCGGGAACTTTTTTCTTTACCTTGGTTATATCACGCCTTTCTATTACATTCCGACTTACGCGGAGACAAAA CTAGGTACATCGCGCTCAATGGCCTCTAATATCTTGATGATTTCCCAGGCTTCTTCGGTTATTGGCCGTGTTGTC TTGACTTTGTTCGCTCATTACTATGGGTCGATGATTGCTTGGATCATTTGCGGTATACTCTCAGGCGTTCTGTGT ATTTGTTGGATCAGTGCAGACAGCCTTGCCCGGTTTGTTCTTTTTGCTGCCTTCTATGGTGGTATCTCCGGGGCT TTGATTCCTCTGCCGCCGAGCGTTTTCACTCACGTCTGTCCCGATCCCAAGAGTCTTGGAACTTGGCTTGGAATG GCGCAAAGCTTGAGTAGCTTTGCGAGTCTTGTGGGACCACCAATAGCAGGTGCGCTCGCTTCAATTGGCGCCGAT GGTAGTGCGGATTTGAACTACTTGGGTATTCAATTGTTTAGTGGGATAGTCATGTGTTTTGGCGCATTCCAGCTG ATCTTTTTATGGTATTTGCTGTACAAAAAGAGGGGCAAAACTGGTTTATTTTAA |
| Gene | >Pro_DTO377G3_2|g3198.t1 ATGTTATCGGAAAAAGGCAAGACGCAGCCCGAGGTCACAGATCTGGCACATATCACGGAAGATGAAGAGTCATCT GGAATACACTCTACCTTTGCTGTAAAAAGTAAAGTGTATAGCTGTCTCCAAGTTCTCGGTGCTTTCTTTATATTC TTCAATGTCTGGTATGTGAAACATCTTTCGGCTTCCAATTGAATATCAAAACCAACTGATTTCCAGGGGCCTCAA CCTCGCATTTGGGACATTCCAAAGCTACTATGCACTCACCTATATCCCATCATCGACATCATCTGACATCGCCTG GATTGGAACGATTCAATCCTGGCTCCTAATCGTCGGCGGTCTACTATCCGGCCCACTTTTCGACCTTGGCTACAA CCAGAGCATGATTCTCGTCGGCAGTACCCTAGGTGTAGTCGGCATAATGATGCTCAGTCTTGCACATGACTACTA CGCCATATTCCTAAGCCAGGGGGTCTGCATGGGCCTCGGATTCGGACTGCTTTATGTCCCTGCTATTGCATTGGT CAGCCGTTCTTTCACAACAAGAAGGGCTGTTGCGCTAGGTATTTCGAGTAGCGGTGCGCCTGTCGGGGGTATTAT CTATACAACGATGTTCAACCAGCTTATATCAAAGGTTGGGTTCGCCTGGACCGTCCGCCTTGTGGCGTTCTTGAT GCTGGCGCTGTTCATCGCGGCTGCTATTATGCTTTTGTGGCCGGAGAGACATGCAGTGAAGGTTAAAAATACCCA GCGCAGGAGCTTGATTGATTTGCGCGCATTGAAGGATTTGCCTTTTTGGAGCTTTGCTATCGGGAACTTTTTTCT TTACCTTGGTTATATCACGCCTTTCTATTACATTCCGACTTACGCGGAGACAAAACTAGGTACATCGCGCTCAAT GGCCTCTAATATCTTGATGATTTCCCAGGCTTCTTCGGTTATTGGCCGTGTTGTCTTGACTTTGTTCGCTCATTA CTATGGGTCGATGATTGCTTGGATCATTTGCGGTATACTCTCAGGCGTTCTGTGTATTTGTTGGATCAGTGCAGA CAGCCTTGCCCGGTTTGTTCTTTTTGCTGCCTTCTATGGTAAGTGAAGTTCATTCTCCAAGTCATCGGTGCTCTA TTTTGACCCAAATCACAGGTGGTATCTCCGGGGCTTTGATTCCTCTGCCGCCGAGCGTTTTCACTCACGTCTGTC CCGATCCCAAGAGTCTTGGAACTTGGCTTGGAATGGCGCAAAGCTTGAGTAGCTTTGCGAGTCTTGTGGGACCAC CAATAGCAGGTGCGCTCGCTTCAATTGGCGCCGATGGTAGTGCGGATTTGAACTACTTGGGTATTCAATTGTTTA GTGGGATAGTCATGTGTTTTGGCGCATTCCAGCTGATCTTTTTATGGTATTTGCTGTACAAAAAGAGGGGCAAAA CTGGTTTATTTTAA |