© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3194.t1 |
| Gene name | |
| Location | scaffold_04:943101..944693 |
| Strand | + |
| Gene length (bp) | 1592 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1146 |
| Protein length (aa) | 382 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 1.4E-50 | 15 | 270 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051234 | establishment of localization | No |
| GO:0009987 | cellular process | No |
| GO:0006811 | ion transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 32 | 19 |
| 2 | 36 | 58 | 22 |
| 3 | 79 | 101 | 22 |
| 4 | 116 | 135 | 19 |
| 5 | 213 | 235 | 22 |
| 6 | 240 | 259 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 70.80 | 41.39 | 100.20 |
| 5d_25C | Five days - 25 degrees Celsius | 45.03 | 25.10 | 64.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 52.24 | 28.52 | 75.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 26.20 | 12.86 | 39.53 |
| 7d_15C | Seven days - 15 degrees Celsius | 81.96 | 40.64 | 123.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 47.80 | 25.95 | 69.64 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.054784 | no |
| 3d_25C | 7d_25C | 0.228923 | no |
| 3d_25C | 7d_15C | 0.651801 | no |
| 3d_25C | 7d_30C | 0.119721 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.632258 | no |
| 5d_25C | 7d_15C | 0.015268 | yes |
| 5d_25C | 7d_30C | 0.877175 | no |
| 5d_25C | 10d_25C | 0.041798 | yes |
| 7d_25C | 7d_15C | 0.093414 | no |
| 7d_25C | 7d_30C | 0.804205 | no |
| 7d_25C | 10d_25C | 0.007091 | yes |
| 7d_15C | 7d_30C | 0.042821 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.024417 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3194.t1 MVLHLSRSTRLSVVIGISTCFFLAEISLGFYTHSIALIADAFHYLNDLVGFIIALVALKKSERSDSPKELTFGWQ RAQLLGAFFNGVLLLGLGISIFLQSIERFIALQHIHDPKLMFIIGCIGLGLNIISVVFLHEHGHDHGHEHSHDHS LSPTIETPVLHLDEEYLDSSTKHDDHKHLHFEKHRCADSGGHSHGHGGHDHGDLGMMGVMIHVIGDAINNLGVMA AGLVIWLAAPYAGRYYADPGVSMFIAILIILSSFPMMRRAGMILLESVPTGVDMCDVKHDLEKIKGVNSIHELHI WRLNQQKTLASVHVVVSEDSVEDFMKTARVINECFHAYGIHSITLQPELSDAVDSQDGASQESSRCQVICGTLCE RLTCCG* |
| Coding | >Pro_DTO377G3_2|g3194.t1 ATGGTTCTTCATCTATCGCGCTCGACACGGCTAAGCGTTGTGATTGGCATATCGACATGTTTCTTTCTAGCTGAG ATTTCGCTGGGCTTCTATACCCATTCTATTGCTCTGATTGCAGATGCTTTCCACTATCTGAATGATTTAGTTGGG TTTATTATTGCTCTTGTTGCATTGAAGAAATCCGAGCGCAGTGACTCGCCTAAGGAGCTCACCTTTGGTTGGCAG CGGGCGCAACTGCTCGGTGCCTTTTTCAATGGTGTTCTTCTGCTTGGATTGGGCATTAGTATATTTTTACAGTCC ATTGAGCGATTTATCGCTCTACAACATATTCACGACCCCAAGCTGATGTTCATCATTGGGTGTATCGGATTGGGC CTGAATATTATTAGCGTAGTCTTTCTTCACGAACATGGACATGATCATGGACATGAACACAGTCATGACCATAGT CTATCACCCACGATTGAGACACCGGTTCTTCACCTCGACGAGGAATACCTTGATTCCAGCACCAAGCATGACGAT CACAAGCATCTTCATTTCGAAAAACATCGCTGTGCAGACTCAGGCGGCCACAGCCATGGTCATGGCGGCCACGAC CACGGTGATTTGGGCATGATGGGAGTGATGATCCACGTTATCGGCGATGCAATCAATAACTTGGGTGTCATGGCG GCCGGTCTGGTCATCTGGCTCGCTGCACCCTATGCCGGCCGATACTATGCGGATCCCGGTGTGAGCATGTTCATT GCCATCCTCATTATTCTATCGTCCTTCCCTATGATGCGCCGGGCTGGGATGATCCTGCTAGAGAGCGTGCCCACA GGGGTTGACATGTGCGATGTCAAGCACGACCTAGAAAAGATCAAGGGCGTCAATTCAATCCACGAACTCCATATC TGGCGCCTCAACCAACAAAAAACCCTCGCCTCAGTTCACGTCGTGGTGTCTGAGGACTCGGTCGAGGACTTTATG AAGACGGCGCGCGTGATCAACGAGTGTTTCCACGCCTATGGAATTCACTCCATTACACTGCAGCCTGAGCTGTCA GATGCAGTTGATTCGCAAGATGGGGCTTCGCAGGAATCTTCCCGGTGCCAGGTCATTTGCGGGACTCTCTGCGAA CGGTTGACTTGCTGCGGATAG |
| Transcript | >Pro_DTO377G3_2|g3194.t1 ATGGTTCTTCATCTATCGCGCTCGACACGGCTAAGCGTTGTGATTGGCATATCGACATGTTTCTTTCTAGCTGAG ATTTCGCTGGGCTTCTATACCCATTCTATTGCTCTGATTGCAGATGCTTTCCACTATCTGAATGATTTAGTTGGG TTTATTATTGCTCTTGTTGCATTGAAGAAATCCGAGCGCAGTGACTCGCCTAAGGAGCTCACCTTTGGTTGGCAG CGGGCGCAACTGCTCGGTGCCTTTTTCAATGGTGTTCTTCTGCTTGGATTGGGCATTAGTATATTTTTACAGTCC ATTGAGCGATTTATCGCTCTACAACATATTCACGACCCCAAGCTGATGTTCATCATTGGGTGTATCGGATTGGGC CTGAATATTATTAGCGTAGTCTTTCTTCACGAACATGGACATGATCATGGACATGAACACAGTCATGACCATAGT CTATCACCCACGATTGAGACACCGGTTCTTCACCTCGACGAGGAATACCTTGATTCCAGCACCAAGCATGACGAT CACAAGCATCTTCATTTCGAAAAACATCGCTGTGCAGACTCAGGCGGCCACAGCCATGGTCATGGCGGCCACGAC CACGGTGATTTGGGCATGATGGGAGTGATGATCCACGTTATCGGCGATGCAATCAATAACTTGGGTGTCATGGCG GCCGGTCTGGTCATCTGGCTCGCTGCACCCTATGCCGGCCGATACTATGCGGATCCCGGTGTGAGCATGTTCATT GCCATCCTCATTATTCTATCGTCCTTCCCTATGATGCGCCGGGCTGGGATGATCCTGCTAGAGAGCGTGCCCACA GGGGTTGACATGTGCGATGTCAAGCACGACCTAGAAAAGATCAAGGGCGTCAATTCAATCCACGAACTCCATATC TGGCGCCTCAACCAACAAAAAACCCTCGCCTCAGTTCACGTCGTGGTGTCTGAGGACTCGGTCGAGGACTTTATG AAGACGGCGCGCGTGATCAACGAGTGTTTCCACGCCTATGGAATTCACTCCATTACACTGCAGCCTGAGCTGTCA GATGCAGTTGATTCGCAAGATGGGGCTTCGCAGGAATCTTCCCGGTGCCAGGTCATTTGCGGGACTCTCTGCGAA CGGTTGACTTGCTGCGGATAG |
| Gene | >Pro_DTO377G3_2|g3194.t1 ATGGTTCTTCATCTATCGCGCTCGACACGGCTAAGCGTTGTGATTGGCATATCGACATGTTTCTTTCTAGCTGAG ATTTCGCGTTGGTTGCCCTTTCTTGGTTTCTGTGGTACTGGTCTTGGTATGATATCGATGTGCTGATACCGGGCT AGTGGGCTTCTATACCCATTCTATTGCTCTGATTGCAGATGCTTTCCACTATGTAAGCGTGTTTGGGTGTGGAGT TGGAGATTGTGTTGGTTAACATATATTGCAGCTGAATGATTTAGTTGGGTTTATTATTGCTCTTGTTGCATTGAA GGTACAGTCTGGTTTGGCCGTCGGTGTGGTGGTCATGCTGATGTGAAATATAGAAATCCGAGCGCAGTGACTCGC CTAAGGAGCTCACCTTTGGTTGGCAGCGGGCGCAACTGCTCGGTGCCTTTTTCAATGGTGTTCTTCTGCTTGGAT TGGGCATTAGTATATTTTTACAGTCCATTGAGCGATTTATCGCTCTACAACGTGGGTGCTATCGCCCAGGCTGGA TTTTGTCTCATTTGATTATGACTGACGGTGCGTTTAGATATTCACGACCCCAAGCTGATGTTCATCATTGGGTGT ATCGGATTGGGCCTGAATATTATTAGCGTAGTCTTTCTTCACGGTAGGGTTCGTGGGGTCATTTTTAGTACCATG CTAACAGTACCCAGAACATGGACATGATCATGGACATGAACACAGTCATGACCATAGTCTATCACCCACGATTGA GACACCGGTTCTTCACCTCGACGAGGAATACCTTGATTCCAGCACCAAGGTAAACTGCAACAAATTGAGCGATCC AATTAATGGAGACCGACTGACACAGCTTAGCATGACGATCACAAGCATCTTCATTTCGAAAAACATCGCTGTGCA GACTCAGGCGGCCACAGCCATGGTCATGGCGGCCACGACCACGGTGATTTGGGCATGATGGGAGTGATGATCCAC GTTATCGGCGATGCAATCAATAACTTGGGTGTCATGGCGGCCGGTCTGGTCATCTGGCTCGCTGCACCCTATGCC GGCCGATACTATGCGGATCCCGGTGTGAGCATGTTCATTGCCATCCTCATTATTCTATCGTCCTTCCCTATGAGT AAGTGTGGTACCAGCATGAATGGTTGAAAAGGAGATAGCGAAGCTGACACTCTTCAGTGCGCCGGGCTGGGATGA TCCTGCTAGAGAGCGTGCCCACAGGGGTTGACATGTGCGATGTCAAGCACGACCTAGAAAAGGTATTTCCACCTT TCATCTTCTCTTTCTTCATTCCTAACAATCGCCAGATCAAGGGCGTCAATTCAATCCACGAACTCCATATCTGGC GCCTCAACCAACAAAAAACCCTCGCCTCAGTTCACGTCGTGGTGTCTGAGGACTCGGTCGAGGACTTTATGAAGA CGGCGCGCGTGATCAACGAGTGTTTCCACGCCTATGGAATTCACTCCATTACACTGCAGCCTGAGCTGTCAGATG CAGTTGATTCGCAAGATGGGGCTTCGCAGGAATCTTCCCGGTGCCAGGTCATTTGCGGGACTCTCTGCGAACGGT TGACTTGCTGCGGATAG |