© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3193.t1 |
| Gene name | |
| Location | scaffold_04:940094..942404 |
| Strand | + |
| Gene length (bp) | 2310 |
| Transcript length (bp) | 2178 |
| Coding sequence length (bp) | 2178 |
| Protein length (aa) | 726 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00199 | Catalase | Catalase | 1.1E-166 | 31 | 419 |
| PF06628 | Catalase-rel | Catalase-related immune-responsive | 5.6E-19 | 447 | 511 |
| PF01965 | DJ-1_PfpI | DJ-1/PfpI family | 1.5E-09 | 546 | 642 |
| PF18011 | Catalase_C | C-terminal domain found in long catalases | 4.3E-08 | 545 | 652 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004096 | catalase activity | Yes |
| GO:0020037 | heme binding | Yes |
| GO:0004601 | peroxidase activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0046906 | tetrapyrrole binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016209 | antioxidant activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1195.79 | 581.45 | 1810.13 |
| 5d_25C | Five days - 25 degrees Celsius | 1745.30 | 776.24 | 2714.36 |
| 7d_25C | Seven days - 25 degrees Celsius | 2000.60 | 849.04 | 3152.16 |
| 10d_25C | Ten days - 25 degrees Celsius | 2512.07 | 1035.98 | 3988.16 |
| 7d_15C | Seven days - 15 degrees Celsius | 2203.25 | 847.99 | 3558.51 |
| 7d_30C | Seven days - 30 degrees Celsius | 1287.36 | 578.65 | 1996.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.206226 | no |
| 3d_25C | 7d_25C | 0.075327 | no |
| 3d_25C | 7d_15C | 0.049004 | yes |
| 3d_25C | 7d_30C | 0.860159 | no |
| 3d_25C | 10d_25C | 0.013513 | yes |
| 5d_25C | 7d_25C | 0.738791 | no |
| 5d_25C | 7d_15C | 0.545988 | no |
| 5d_25C | 7d_30C | 0.355258 | no |
| 5d_25C | 10d_25C | 0.281205 | no |
| 7d_25C | 7d_15C | 0.837755 | no |
| 7d_25C | 7d_30C | 0.152072 | no |
| 7d_25C | 10d_25C | 0.551389 | no |
| 7d_15C | 7d_30C | 0.093846 | no |
| 7d_15C | 10d_25C | 0.774065 | no |
| 7d_30C | 10d_25C | 0.030233 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3193.t1 MAAKSHSKTADGKFADLQKDTIEVNDKQHMTTDNGVKISNPDQWLRIVDEKNLGPSLLEDQIAREKITRFDHERI PERVVHARGSGAFGTFKLFESAEDVTTAGILTDTKRETPLFVRFSTVQGSRGSADTVRDVRGFAVKMYTAEGNWD IVGNNIPVFFIQDSIKFPDVIHSVKPEPHNEVPQGQSAHNNFWDFQYLHSEATHMNQWIMSDRAIPRSLRMMQGF GVNTYSLINKAGKRHFVKFHFTPELGVHSLVWDEALKIGGQDPDFHRKDLMEAIEAGHFPRWKFGLQLIPEEKAD SFEFDPLDATKVWPEELVPIRYIGEMELNRNIDEFFPQTEQVAFCTSHIVPGIDFSDDPLLQGRNFSYFDTQISR LGPNWEELPINRPVCPYMNLVNRDGQGRHRITKSKVNYWPNRFSANPPATAEQGGFVSYPAKPQGAKKRALSEKF KEHFNQPQVFYNSLSPIEKMHVAKAFSFELDHCDDPVVYKRMSERLTAIDLDLAKTVAKNVGGDAPVKASKENRG MKAKGLSQLEFMPEKPIIATRRIAILIADGFDFNQYTTMKEVLKERGAFVITVGTQRQGVTAESGQKVIPDHFYS GMRSTLFDAVYVPGGKHIQALSKNGVFKHWISESFAHLKAIAGANEAVPFIERQIGLSEVEVAKSGSPLKESYGV VTGHGDAVSLLKVGTVAPDSKGLAEQFIWHVSQHRNWARELDGLSDQIAA* |
| Coding | >Pro_DTO377G3_2|g3193.t1 ATGGCAGCAAAGTCACACTCCAAGACTGCGGACGGCAAATTTGCCGATCTACAAAAGGACACCATCGAAGTCAAC GACAAGCAGCACATGACAACTGACAATGGCGTCAAAATCTCCAACCCAGACCAATGGCTCCGCATCGTAGACGAA AAGAATCTTGGGCCCTCACTCCTGGAAGATCAGATCGCCCGCGAAAAGATCACGCGCTTCGACCACGAACGCATT CCAGAGAGAGTAGTACATGCGCGCGGAAGCGGCGCCTTCGGCACGTTCAAGCTATTCGAGAGCGCCGAGGACGTA ACAACCGCGGGAATACTGACTGATACAAAGCGGGAGACGCCGCTGTTCGTGCGATTCTCGACTGTGCAGGGTAGC AGGGGCAGTGCGGATACAGTGCGCGATGTGCGCGGGTTCGCTGTTAAGATGTATACCGCGGAGGGAAACTGGGAT ATCGTCGGGAATAACATTCCTGTTTTCTTTATTCAGGACTCGATCAAGTTCCCTGATGTTATTCATTCTGTTAAG CCTGAGCCGCATAATGAGGTGCCGCAGGGTCAGAGTGCGCACAATAATTTCTGGGATTTCCAGTATCTGCATTCG GAGGCTACGCATATGAACCAGTGGATTATGTCCGATAGAGCTATTCCGCGGTCTCTCCGCATGATGCAGGGATTC GGCGTGAATACCTATTCCTTGATTAACAAGGCCGGCAAGCGTCATTTCGTCAAGTTCCACTTCACTCCAGAGCTG GGCGTGCACTCTCTCGTCTGGGATGAGGCGTTGAAGATCGGCGGCCAGGATCCCGACTTCCACCGGAAAGACTTA ATGGAGGCGATCGAGGCAGGACACTTCCCACGCTGGAAGTTCGGCCTGCAACTCATCCCCGAAGAAAAGGCCGAC AGCTTCGAGTTCGACCCTCTCGACGCCACGAAGGTCTGGCCCGAAGAGCTCGTGCCTATCCGCTACATCGGCGAG ATGGAACTTAACCGTAACATCGACGAGTTCTTCCCTCAGACCGAGCAGGTCGCATTCTGCACGAGTCACATTGTG CCAGGCATCGACTTCTCCGACGATCCTCTGCTTCAAGGCCGCAACTTCTCATACTTCGACACGCAGATTTCGCGG CTCGGACCGAATTGGGAGGAGCTGCCTATCAACCGGCCAGTATGTCCATACATGAACCTGGTCAACCGCGACGGC CAGGGCAGACATCGCATCACTAAGAGCAAGGTGAACTACTGGCCGAACCGGTTCTCTGCGAATCCACCCGCGACC GCAGAGCAGGGCGGCTTCGTCAGCTACCCGGCAAAACCGCAGGGCGCAAAGAAGCGCGCGCTGTCAGAGAAGTTC AAGGAGCACTTCAACCAGCCGCAGGTGTTCTACAACTCGCTCTCACCAATTGAGAAGATGCATGTGGCCAAGGCA TTCTCATTCGAGCTAGATCACTGCGACGACCCCGTCGTCTACAAGCGCATGTCAGAACGTCTAACAGCCATCGAT CTAGACCTAGCCAAGACCGTCGCGAAGAATGTCGGTGGCGACGCACCCGTCAAAGCCTCCAAGGAAAACAGGGGT ATGAAAGCCAAGGGTCTGAGCCAGCTTGAATTCATGCCGGAGAAACCCATCATTGCGACGCGTCGCATCGCCATC CTGATTGCTGACGGCTTCGACTTCAACCAGTACACCACAATGAAGGAAGTGCTCAAGGAGCGCGGCGCGTTTGTT ATCACAGTCGGTACGCAGCGCCAGGGTGTGACTGCCGAGTCTGGGCAGAAGGTTATCCCTGACCACTTCTATTCT GGAATGCGGTCGACGCTGTTCGACGCGGTCTACGTGCCTGGCGGAAAGCATATCCAGGCGCTGTCAAAGAATGGC GTATTCAAGCACTGGATTTCCGAGTCTTTCGCTCATCTGAAGGCTATTGCTGGCGCCAACGAGGCTGTGCCGTTT ATTGAGCGGCAGATCGGGCTTTCTGAGGTCGAGGTTGCGAAGAGTGGTTCTCCGCTGAAGGAGTCGTATGGTGTG GTTACGGGCCATGGAGATGCGGTTTCGTTGTTGAAGGTTGGCACGGTCGCGCCCGATTCGAAGGGTCTAGCTGAG CAATTTATTTGGCATGTTTCTCAACACCGCAACTGGGCGCGTGAGCTGGATGGACTTTCAGATCAGATTGCTGCT TAA |
| Transcript | >Pro_DTO377G3_2|g3193.t1 ATGGCAGCAAAGTCACACTCCAAGACTGCGGACGGCAAATTTGCCGATCTACAAAAGGACACCATCGAAGTCAAC GACAAGCAGCACATGACAACTGACAATGGCGTCAAAATCTCCAACCCAGACCAATGGCTCCGCATCGTAGACGAA AAGAATCTTGGGCCCTCACTCCTGGAAGATCAGATCGCCCGCGAAAAGATCACGCGCTTCGACCACGAACGCATT CCAGAGAGAGTAGTACATGCGCGCGGAAGCGGCGCCTTCGGCACGTTCAAGCTATTCGAGAGCGCCGAGGACGTA ACAACCGCGGGAATACTGACTGATACAAAGCGGGAGACGCCGCTGTTCGTGCGATTCTCGACTGTGCAGGGTAGC AGGGGCAGTGCGGATACAGTGCGCGATGTGCGCGGGTTCGCTGTTAAGATGTATACCGCGGAGGGAAACTGGGAT ATCGTCGGGAATAACATTCCTGTTTTCTTTATTCAGGACTCGATCAAGTTCCCTGATGTTATTCATTCTGTTAAG CCTGAGCCGCATAATGAGGTGCCGCAGGGTCAGAGTGCGCACAATAATTTCTGGGATTTCCAGTATCTGCATTCG GAGGCTACGCATATGAACCAGTGGATTATGTCCGATAGAGCTATTCCGCGGTCTCTCCGCATGATGCAGGGATTC GGCGTGAATACCTATTCCTTGATTAACAAGGCCGGCAAGCGTCATTTCGTCAAGTTCCACTTCACTCCAGAGCTG GGCGTGCACTCTCTCGTCTGGGATGAGGCGTTGAAGATCGGCGGCCAGGATCCCGACTTCCACCGGAAAGACTTA ATGGAGGCGATCGAGGCAGGACACTTCCCACGCTGGAAGTTCGGCCTGCAACTCATCCCCGAAGAAAAGGCCGAC AGCTTCGAGTTCGACCCTCTCGACGCCACGAAGGTCTGGCCCGAAGAGCTCGTGCCTATCCGCTACATCGGCGAG ATGGAACTTAACCGTAACATCGACGAGTTCTTCCCTCAGACCGAGCAGGTCGCATTCTGCACGAGTCACATTGTG CCAGGCATCGACTTCTCCGACGATCCTCTGCTTCAAGGCCGCAACTTCTCATACTTCGACACGCAGATTTCGCGG CTCGGACCGAATTGGGAGGAGCTGCCTATCAACCGGCCAGTATGTCCATACATGAACCTGGTCAACCGCGACGGC CAGGGCAGACATCGCATCACTAAGAGCAAGGTGAACTACTGGCCGAACCGGTTCTCTGCGAATCCACCCGCGACC GCAGAGCAGGGCGGCTTCGTCAGCTACCCGGCAAAACCGCAGGGCGCAAAGAAGCGCGCGCTGTCAGAGAAGTTC AAGGAGCACTTCAACCAGCCGCAGGTGTTCTACAACTCGCTCTCACCAATTGAGAAGATGCATGTGGCCAAGGCA TTCTCATTCGAGCTAGATCACTGCGACGACCCCGTCGTCTACAAGCGCATGTCAGAACGTCTAACAGCCATCGAT CTAGACCTAGCCAAGACCGTCGCGAAGAATGTCGGTGGCGACGCACCCGTCAAAGCCTCCAAGGAAAACAGGGGT ATGAAAGCCAAGGGTCTGAGCCAGCTTGAATTCATGCCGGAGAAACCCATCATTGCGACGCGTCGCATCGCCATC CTGATTGCTGACGGCTTCGACTTCAACCAGTACACCACAATGAAGGAAGTGCTCAAGGAGCGCGGCGCGTTTGTT ATCACAGTCGGTACGCAGCGCCAGGGTGTGACTGCCGAGTCTGGGCAGAAGGTTATCCCTGACCACTTCTATTCT GGAATGCGGTCGACGCTGTTCGACGCGGTCTACGTGCCTGGCGGAAAGCATATCCAGGCGCTGTCAAAGAATGGC GTATTCAAGCACTGGATTTCCGAGTCTTTCGCTCATCTGAAGGCTATTGCTGGCGCCAACGAGGCTGTGCCGTTT ATTGAGCGGCAGATCGGGCTTTCTGAGGTCGAGGTTGCGAAGAGTGGTTCTCCGCTGAAGGAGTCGTATGGTGTG GTTACGGGCCATGGAGATGCGGTTTCGTTGTTGAAGGTTGGCACGGTCGCGCCCGATTCGAAGGGTCTAGCTGAG CAATTTATTTGGCATGTTTCTCAACACCGCAACTGGGCGCGTGAGCTGGATGGACTTTCAGATCAGATTGCTGCT TAA |
| Gene | >Pro_DTO377G3_2|g3193.t1 ATGGCAGCAAAGTCACACTCCAAGACTGCGGACGGCAAATTTGCCGATCTACAAAAGGACACCATCGAAGTCAAC GACAAGCAGCACATGACAACTGACAATGGCGTCAAAATCTCCAACCCAGACCAATGGCTCCGCATCGTAGACGAA AAGAATCTTGGGCCCTCACTCCTGGAAGATCAGATCGCCCGCGAAAAGGTATCTATAACTTACATTCATCCACAT ATATACCAATATATATCTAAGCAAACTAACCAACAAACAATAGATCACGCGCTTCGACCACGAACGCATTCCAGA GAGAGTAGTACATGCGCGCGGAAGCGGCGCCTTCGGCACGTTCAAGCTATTCGAGAGCGCCGAGGACGTAACAAC CGCGGGAATACTGACTGATACAAAGCGGGAGACGCCGCTGTTCGTGCGATTCTCGACTGTGCAGGGTAGCAGGGG CAGTGCGGATACAGTGCGCGATGTGCGCGGGTTCGCTGTTAAGATGTATACCGCGGAGGGAAACTGGGATATCGT CGGGAATAACATTCCTGTTTTCTTTATTCAGGACTCGATCAAGTTCCCTGATGTTATTCATTCTGTTAAGCCTGA GCCGCATAATGAGGTGCCGCAGGGTCAGAGTGCGCACAATAATTTCTGGGATTTCCAGTATCTGCATTCGGAGGC TACGCATATGAACCAGTGGGTTAGTATTTCTCCCTATTTGGTTGTGTGTCGATACCTGATAGCTGATGCGGTTCG TGATAGATTATGTCCGATAGAGCTATTCCGCGGTCTCTCCGCATGATGCAGGGATTCGGCGTGAATACCTATTCC TTGATTAACAAGGCCGGCAAGCGTCATTTCGTCAAGTTCCACTTCACTCCAGAGCTGGGCGTGCACTCTCTCGTC TGGGATGAGGCGTTGAAGATCGGCGGCCAGGATCCCGACTTCCACCGGAAAGACTTAATGGAGGCGATCGAGGCA GGACACTTCCCACGCTGGAAGTTCGGCCTGCAACTCATCCCCGAAGAAAAGGCCGACAGCTTCGAGTTCGACCCT CTCGACGCCACGAAGGTCTGGCCCGAAGAGCTCGTGCCTATCCGCTACATCGGCGAGATGGAACTTAACCGTAAC ATCGACGAGTTCTTCCCTCAGACCGAGCAGGTCGCATTCTGCACGAGTCACATTGTGCCAGGCATCGACTTCTCC GACGATCCTCTGCTTCAAGGCCGCAACTTCTCATACTTCGACACGCAGATTTCGCGGCTCGGACCGAATTGGGAG GAGCTGCCTATCAACCGGCCAGTATGTCCATACATGAACCTGGTCAACCGCGACGGCCAGGGCAGACATCGCATC ACTAAGAGCAAGGTGAACTACTGGCCGAACCGGTTCTCTGCGAATCCACCCGCGACCGCAGAGCAGGGCGGCTTC GTCAGCTACCCGGCAAAACCGCAGGGCGCAAAGAAGCGCGCGCTGTCAGAGAAGTTCAAGGAGCACTTCAACCAG CCGCAGGTGTTCTACAACTCGCTCTCACCAATTGAGAAGATGCATGTGGCCAAGGCATTCTCATTCGAGCTAGAT CACTGCGACGACCCCGTCGTCTACAAGCGCATGTCAGAACGTCTAACAGCCATCGATCTAGACCTAGCCAAGACC GTCGCGAAGAATGTCGGTGGCGACGCACCCGTCAAAGCCTCCAAGGAAAACAGGGGTATGAAAGCCAAGGGTCTG AGCCAGCTTGAATTCATGCCGGAGAAACCCATCATTGCGACGCGTCGCATCGCCATCCTGATTGCTGACGGCTTC GACTTCAACCAGTACACCACAATGAAGGAAGTGCTCAAGGAGCGCGGCGCGTTTGTTATCACAGTCGGTACGCAG CGCCAGGGTGTGACTGCCGAGTCTGGGCAGAAGGTTATCCCTGACCACTTCTATTCTGGAATGCGGTCGACGCTG TTCGACGCGGTCTACGTGCCTGGCGGAAAGCATATCCAGGCGCTGTCAAAGAATGGCGTATTCAAGCACTGGATT TCCGAGTCTTTCGCTCATCTGAAGGCTATTGCTGGCGCCAACGAGGCTGTGCCGTTTATTGAGCGGCAGATCGGG CTTTCTGAGGTCGAGGTTGCGAAGAGTGGTTCTCCGCTGAAGGAGTCGTATGGTGTGGTTACGGGCCATGGAGAT GCGGTTTCGTTGTTGAAGGTTGGCACGGTCGCGCCCGATTCGAAGGGTCTAGCTGAGCAATTTATTTGGCATGTT TCTCAACACCGCAACTGGGCGCGTGAGCTGGATGGACTTTCAGATCAGATTGCTGCTTAA |