© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3177.t1 |
| Gene name | |
| Location | scaffold_04:902771..905063 |
| Strand | + |
| Gene length (bp) | 2292 |
| Transcript length (bp) | 1752 |
| Coding sequence length (bp) | 1752 |
| Protein length (aa) | 584 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00135 | COesterase | Carboxylesterase family | 8.8E-79 | 65 | 562 |
| PF20434 | BD-FAE | BD-FAE | 1.1E-15 | 149 | 272 |
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 5.7E-06 | 166 | 262 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 24 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.51 | 0.00 | 1.07 |
| 5d_25C | Five days - 25 degrees Celsius | 0.72 | 0.01 | 1.43 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.63 | 0.00 | 1.29 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.00 | 0.08 | 1.93 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.64 | 0.25 | 3.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.70 | 0.34 | 3.06 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.669433 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 0.049004 | yes |
| 3d_25C | 7d_30C | 0.038776 | yes |
| 3d_25C | 10d_25C | 0.284407 | no |
| 5d_25C | 7d_25C | 0.884766 | no |
| 5d_25C | 7d_15C | 0.127752 | no |
| 5d_25C | 7d_30C | 0.094967 | no |
| 5d_25C | 10d_25C | 0.613614 | no |
| 7d_25C | 7d_15C | 0.074263 | no |
| 7d_25C | 7d_30C | 0.054593 | no |
| 7d_25C | 10d_25C | 0.453442 | no |
| 7d_15C | 7d_30C | 0.965373 | no |
| 7d_15C | 10d_25C | 0.370751 | no |
| 7d_30C | 10d_25C | 0.303367 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3177.t1 MRSMTRASTVLSTLFLCIISGTIANSLSSKTTGNTANTPTATLSISNQSLKTIFVGRSLPEFNQDLFLGIKYADE PIRFTPVELKSDYASKDNDSGHYNLSPEEVVSATSNLVYYNAMEYGYDCPAYGSDTTDMVNSGLITLNEDCFNLN IIRPNADESNGLLPVVIWIFGGGWAQGATADPRYNMSYIVEQSALNGKPVLGVSINYRLAAFGFLDSEEVEGNTN LALRDQRTAMRWVKKNIKAFGGDPSKITIWGESAGAYSVGAHLVTNNGDNEGLFRAAIMDSGNAVGPPYNGTEWH QPMYDRIVERAGCTNSLNTLQCLRELPYAALYSIANEGLEWFATVDGSFITQYPQINYREGTLAQVPILLGTNTD EGTSFGTTGTNTVEDCINELTTSKRWILNRPQATQLLSYYPNVPAIGCPYGWGNTTWPSLGLMYKRYASIAGDVT MVAPRRMLAHRMASLHEDVYSYRWDVAALNGSTTIGVQHFAEIPFVFANPVQAITPLGSDPERLKLAQMAARMWT SFVADLDPNGHGVPDIAKWPKYSSRATNFVFRLPRNECYVEADIYRVDGIDYINSIAR* |
| Coding | >Pro_DTO377G3_2|g3177.t1 ATGCGGTCGATGACAAGAGCCTCGACGGTCCTTTCGACCTTATTCCTCTGTATAATTTCCGGAACAATAGCCAAC TCTCTCTCATCCAAAACAACGGGTAACACAGCGAATACCCCAACAGCAACCCTATCAATAAGCAATCAAAGCCTA AAGACCATCTTCGTGGGCCGCTCTCTTCCGGAATTCAACCAAGATCTTTTTCTGGGCATCAAGTATGCCGACGAG CCAATACGCTTCACACCAGTCGAGCTCAAGAGCGACTATGCATCGAAGGATAATGACTCTGGACATTATAATCTA TCACCAGAAGAAGTCGTCAGCGCTACTTCTAACCTGGTATACTACAATGCTATGGAGTACGGCTACGACTGTCCC GCGTATGGATCCGATACCACCGACATGGTCAACAGTGGTCTTATCACTTTGAACGAGGACTGCTTTAACTTAAAT ATTATCCGACCTAATGCCGACGAGAGTAACGGATTGCTTCCAGTTGTGATCTGGATTTTCGGTGGTGGGTGGGCA CAGGGCGCTACTGCGGATCCGAGATATAATATGAGCTATATCGTTGAACAGAGCGCATTGAACGGCAAGCCAGTT CTGGGTGTTTCTATCAACTACCGTCTGGCAGCATTCGGATTCCTTGACTCGGAGGAAGTCGAAGGAAACACCAAT CTAGCACTGCGTGACCAGCGCACGGCGATGCGCTGGGTGAAGAAGAATATCAAAGCGTTCGGCGGTGATCCGAGC AAGATCACTATTTGGGGCGAGTCTGCTGGTGCATATAGTGTTGGAGCTCATCTGGTGACCAACAATGGCGATAAC GAGGGTCTTTTTAGAGCTGCAATCATGGATTCTGGAAATGCTGTCGGGCCCCCATACAACGGAACAGAATGGCAC CAGCCAATGTACGACCGAATCGTCGAGAGAGCCGGATGCACCAATTCATTGAATACCCTACAATGTCTCCGTGAG CTGCCATACGCAGCTTTATACAGCATTGCAAACGAGGGTCTAGAATGGTTTGCTACTGTCGACGGCTCATTCATA ACCCAGTATCCGCAAATCAACTACAGAGAAGGCACATTAGCTCAAGTGCCTATCTTGTTAGGGACAAATACCGAT GAAGGTACCAGTTTTGGGACGACTGGCACAAACACCGTTGAGGACTGCATCAATGAATTGACTACATCCAAGCGT TGGATCCTCAACCGTCCCCAAGCTACCCAGCTGCTGTCCTACTACCCCAACGTCCCCGCCATTGGCTGCCCCTAT GGCTGGGGAAATACCACCTGGCCCTCGCTGGGACTCATGTACAAGCGCTATGCATCCATAGCCGGGGATGTGACC ATGGTAGCGCCACGGCGCATGTTAGCCCATCGAATGGCCAGCTTGCACGAGGATGTATATTCGTACAGATGGGAT GTGGCAGCGTTAAATGGCTCAACAACGATTGGGGTGCAACATTTCGCAGAGATCCCTTTCGTCTTTGCAAATCCA GTGCAGGCCATCACACCGCTAGGGTCCGACCCTGAGCGCTTGAAACTGGCCCAAATGGCAGCGCGGATGTGGACA TCATTCGTGGCAGACTTAGATCCCAATGGACATGGTGTGCCGGATATTGCCAAATGGCCCAAGTATTCGTCCCGA GCGACGAACTTTGTTTTCCGCTTACCCCGAAATGAGTGTTATGTCGAGGCTGACATATACCGCGTCGATGGGATT GATTATATCAACAGCATCGCGCGGTAA |
| Transcript | >Pro_DTO377G3_2|g3177.t1 ATGCGGTCGATGACAAGAGCCTCGACGGTCCTTTCGACCTTATTCCTCTGTATAATTTCCGGAACAATAGCCAAC TCTCTCTCATCCAAAACAACGGGTAACACAGCGAATACCCCAACAGCAACCCTATCAATAAGCAATCAAAGCCTA AAGACCATCTTCGTGGGCCGCTCTCTTCCGGAATTCAACCAAGATCTTTTTCTGGGCATCAAGTATGCCGACGAG CCAATACGCTTCACACCAGTCGAGCTCAAGAGCGACTATGCATCGAAGGATAATGACTCTGGACATTATAATCTA TCACCAGAAGAAGTCGTCAGCGCTACTTCTAACCTGGTATACTACAATGCTATGGAGTACGGCTACGACTGTCCC GCGTATGGATCCGATACCACCGACATGGTCAACAGTGGTCTTATCACTTTGAACGAGGACTGCTTTAACTTAAAT ATTATCCGACCTAATGCCGACGAGAGTAACGGATTGCTTCCAGTTGTGATCTGGATTTTCGGTGGTGGGTGGGCA CAGGGCGCTACTGCGGATCCGAGATATAATATGAGCTATATCGTTGAACAGAGCGCATTGAACGGCAAGCCAGTT CTGGGTGTTTCTATCAACTACCGTCTGGCAGCATTCGGATTCCTTGACTCGGAGGAAGTCGAAGGAAACACCAAT CTAGCACTGCGTGACCAGCGCACGGCGATGCGCTGGGTGAAGAAGAATATCAAAGCGTTCGGCGGTGATCCGAGC AAGATCACTATTTGGGGCGAGTCTGCTGGTGCATATAGTGTTGGAGCTCATCTGGTGACCAACAATGGCGATAAC GAGGGTCTTTTTAGAGCTGCAATCATGGATTCTGGAAATGCTGTCGGGCCCCCATACAACGGAACAGAATGGCAC CAGCCAATGTACGACCGAATCGTCGAGAGAGCCGGATGCACCAATTCATTGAATACCCTACAATGTCTCCGTGAG CTGCCATACGCAGCTTTATACAGCATTGCAAACGAGGGTCTAGAATGGTTTGCTACTGTCGACGGCTCATTCATA ACCCAGTATCCGCAAATCAACTACAGAGAAGGCACATTAGCTCAAGTGCCTATCTTGTTAGGGACAAATACCGAT GAAGGTACCAGTTTTGGGACGACTGGCACAAACACCGTTGAGGACTGCATCAATGAATTGACTACATCCAAGCGT TGGATCCTCAACCGTCCCCAAGCTACCCAGCTGCTGTCCTACTACCCCAACGTCCCCGCCATTGGCTGCCCCTAT GGCTGGGGAAATACCACCTGGCCCTCGCTGGGACTCATGTACAAGCGCTATGCATCCATAGCCGGGGATGTGACC ATGGTAGCGCCACGGCGCATGTTAGCCCATCGAATGGCCAGCTTGCACGAGGATGTATATTCGTACAGATGGGAT GTGGCAGCGTTAAATGGCTCAACAACGATTGGGGTGCAACATTTCGCAGAGATCCCTTTCGTCTTTGCAAATCCA GTGCAGGCCATCACACCGCTAGGGTCCGACCCTGAGCGCTTGAAACTGGCCCAAATGGCAGCGCGGATGTGGACA TCATTCGTGGCAGACTTAGATCCCAATGGACATGGTGTGCCGGATATTGCCAAATGGCCCAAGTATTCGTCCCGA GCGACGAACTTTGTTTTCCGCTTACCCCGAAATGAGTGTTATGTCGAGGCTGACATATACCGCGTCGATGGGATT GATTATATCAACAGCATCGCGCGGTAA |
| Gene | >Pro_DTO377G3_2|g3177.t1 ATGCGGTCGATGACAAGAGCCTCGACGGTCCTTTCGACCTTATTCCTCTGTATAATTTCCGGAACAATAGCCAAC TCTCTCTCATCCAAAACAACGGGTAACACAGCGAATACCCCAACAGCAACCCTATCAATAAGCAATCAAAGCCTA AAGACCATCTTCGTGGGCCGCTCTCTTCCGGAATTCAACCAAGATCTTTTTCTGGGCATCAAGTATGCCGACGAG CCAATACGCTTCACACCAGTCGAGCTCAAGAGCGACTATGCATCGAAGGATAATGACTCTGGACATTATAATCTA TCACCAGAAGAAGTCGTCAGCGCTACTTCTAACCTGGTATACTACAATGCTATGGAGTACGGCTACGACTGTCCC GCGTATGGATCCGATACCACCGACATGGTCAACAGTGGTCTTATCACTTTGAACGAGGACTGCTTTAACTTAAAT ATTATCCGACCTAATGCCGACGAGAGTAACGGATTGCTTCCAGTTGTGATCTGGATTTTCGGTGGTGGGTGGGCA CAGGGCGCTACTGCGGATCCGAGGTATGTTGGTCGAGGAATATAGGGCTGGGTACGAATGTTCATACCTTAGAAA GGTGGCCGATGGCTGTGGTTAACCTTATGCTACGCTGCCTATAGATATAATATGAGCTATATCGTTGAACAGAGC GCATTGAACGGCAAGCCAGTTCTGGGTGTTTCTATCAACTACCGTCTGGCAGCATTCGGATTCCTTGACTCGGAG GAAGTAAGGGTAGTGCCAATATATAGAAACTTGGATACTGAGGATTCTTGAGATTAACTTGGACTCCAGGTCGAA GGAAACACCAATCTAGCACTGCGTGACCAGCGCACGGCGATGCGCTGGGTGAAGAAGAATATCAAAGCGTTCGGC GGTGATCCGAGCAAGATCACTATTTGGGGCGAGTCTGCGTGAGTCACTGGAAATATTTTGGTATAACAGATGCTT AATTTTGAATAAACAGTGGTGCATATAGTGTTGGAGCTCATCTGGTGACCAACAATGGCGATAACGAGGGTCTTT TTAGAGCTGGTATAGTCCACTGTACTTCGTGCCATTTTACGACACCAGACTAAGGTTCGCCTAGCAATCATGGAT TCTGGAAATGCTGTCGGGCCCCCATACAACGGAACAGAATGGCACCAGCCAATGTACGACCGAATCGTCGAGAGA GCCGGGTGAGTCTATATCAAACAAGTCTATATCAAACAAGTCTCTATCAAATGACGCTGAATATACTATATCTAG ATGCACCAATTCATTGAATACCCTACAATGTCTCCGTGAGCTGCCATACGCAGCTTTATACAGCATTGCAAACGA GGGTCTAGAATGGTTTGCTACTGTCGACGGCTCATTCATAACCCAGTATCCGCAAATCAACTACAGAGAAGGCAC ATTAGCTCAAGTGCCTATCTTGTTAGGGACAAATACCGATGAAGGTACCAGTTTTGGGACGACTGGCACAAACAC CGTTGAGGACTGCATCAATGAATTGACTAGTACGTGTTGTGTATAGCATTTTTAAGTCACATCGTGCTAAGCGAG TAGCACAGCATCCAAGCGTTGGATCCTCAACCGTCCCCAAGCTACCCAGCTGCTGTCCTACTACCCCAACGTCCC CGCCATTGGCTGCCCCTATGGCTGGGGAAATACCACCTGGCCCTCGCTGGGACTCATGTACAAGCGCTATGCATC CATAGCCGGGGATGTGACCATGGTAGCGCCACGGCGCATGTTAGCCCATCGAATGGCCAGCTTGCACGAGGATGT ATATTCGTACAGATGGGATGTGGCAGCGTTAAATGGCTCAACAACGATTGGGGTGCAACATTTCGCAGAGGTATG TAGTAACCCACCTAGTCTTAGATACAACCTACCTAGCTCTCTGGTCTGCAAGATAGACTGACGCTTGTATCGGTT ATACAGATCCCTTTCGTCTTTGCAAATCCAGTGCAGGCCATCACACCGCTAGGGTCCGACCCTGAGCGCTTGAAA CTGGCCCAAATGGCAGCGCGGATGTGGACATCATTCGTGGCAGACTTAGATCCCAATGGACATGGTGGTTAGTAG AACACACGTGCGGCTAGAATCTATTGTTTGGCATCTGACTTCTTCTTTCTAGTGCCGGATATTGCCAAATGGCCC AAGTATTCGTCCCGAGCGACGAACTTTGTTTTCCGCTTACCCCGAAATGAGTGTTATGTCGAGGCTGACATATAC CGCGTCGATGGGATTGATTATATCAACAGCATCGCGCGGTAA |