© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g3167.t1 |
| Gene name | |
| Location | scaffold_04:876607..878791 |
| Strand | + |
| Gene length (bp) | 2184 |
| Transcript length (bp) | 1863 |
| Coding sequence length (bp) | 1863 |
| Protein length (aa) | 621 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01794 | Ferric_reduct | Ferric reductase like transmembrane component | 3.1E-21 | 154 | 271 |
| PF08022 | FAD_binding_8 | FAD-binding domain | 4.3E-13 | 309 | 410 |
| PF08030 | NAD_binding_6 | Ferric reductase NAD binding domain | 1.6E-09 | 419 | 596 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 51 | 73 | 22 |
| 2 | 108 | 130 | 22 |
| 3 | 192 | 214 | 22 |
| 4 | 227 | 249 | 22 |
| 5 | 259 | 278 | 19 |
| 6 | 285 | 307 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 109.94 | 67.14 | 152.74 |
| 5d_25C | Five days - 25 degrees Celsius | 70.90 | 42.57 | 99.22 |
| 7d_25C | Seven days - 25 degrees Celsius | 61.38 | 37.27 | 85.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 37.56 | 21.74 | 53.38 |
| 7d_15C | Seven days - 15 degrees Celsius | 76.33 | 46.59 | 106.06 |
| 7d_30C | Seven days - 30 degrees Celsius | 58.26 | 35.42 | 81.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.035449 | yes |
| 3d_25C | 7d_25C | 0.003197 | yes |
| 3d_25C | 7d_15C | 0.088306 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.596201 | no |
| 5d_25C | 7d_15C | 0.814349 | no |
| 5d_25C | 7d_30C | 0.446715 | no |
| 5d_25C | 10d_25C | 0.002297 | yes |
| 7d_25C | 7d_15C | 0.365193 | no |
| 7d_25C | 7d_30C | 0.871994 | no |
| 7d_25C | 10d_25C | 0.022435 | yes |
| 7d_15C | 7d_30C | 0.245676 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.042821 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3167.t1 MMDMKMAEGTPWLDQPVMLHSSRADKCKLTESQCLYRNYHWRYWYQADHVYALNTVYFMCAVIGVFAISNLLVRF APDRVKRTRPWRMFTSASRYLSYRGYRLPALRYWSPALGVVILGAVGAVFFFAMTLGPQPYYWPTDASYGSSPPI ATRSGWMALALLPFVLALSTKANMISGVTGIPHEKLQVFHHWTSYAMFVLALIHTFPFIIYHIWKGDMMYQWKTS VVYWTGVAALISQTYLTLMSLPFIRNRFYEFFKATHIFVAVVFVVFFFLHCDFRLSSWDYFIASGVIYFLSIIAS HIRTYLMHGIHNATIELVPSGLVRVAVPSIIKWTPGQHVFVRFLTSDLHLLTAHPFTISSACRNPDEIGKASELV FYIKIRSGVTGRLGAMASKNPGCTKKILMEGPYGGVSEPHMARFDTILVIAGGSGGVFSLAMVDEALRLTGINAP AGEKQALSRRNLQVVYSTRDHAMVDWYIDEIKSRLSESDMLSAQSNNGFETAVSVHITDPQGLGISSASESDDVK STFGKVPPAEITTAGSFSLNVHRNARPDIPSLVARTVAMAHVQGTHLQKKQRVGILVCGPASMLHDTRNAAALAQ ARVFGGEIEELYLHSEPFVW* |
| Coding | >Pro_DTO377G3_2|g3167.t1 ATGATGGACATGAAGATGGCCGAGGGCACACCCTGGCTCGATCAGCCGGTGATGCTTCATTCGTCTCGCGCCGAC AAGTGCAAGCTGACCGAGTCTCAATGTCTCTATCGCAACTATCACTGGCGATACTGGTACCAAGCCGACCATGTT TACGCATTGAACACCGTCTACTTCATGTGTGCGGTGATTGGGGTGTTCGCGATCTCGAACTTGCTTGTACGATTC GCTCCAGATAGAGTGAAACGGACCAGACCATGGCGCATGTTCACCTCTGCCTCACGATACCTTTCTTATCGTGGA TATCGATTGCCTGCGCTGCGATATTGGTCTCCAGCATTAGGGGTGGTGATTCTAGGTGCTGTAGGCGCTGTCTTC TTCTTCGCGATGACACTCGGCCCGCAACCTTATTACTGGCCAACAGATGCTTCTTATGGAAGTAGTCCTCCGATT GCGACTCGATCGGGCTGGATGGCTCTTGCGCTGCTTCCATTTGTACTGGCACTGAGCACGAAAGCTAACATGATC TCTGGCGTGACCGGTATTCCGCATGAGAAACTTCAAGTGTTTCACCACTGGACTAGCTATGCGATGTTTGTGTTG GCCTTGATTCACACCTTCCCTTTCATCATATATCATATCTGGAAGGGGGATATGATGTATCAGTGGAAGACAAGT GTCGTTTACTGGACAGGGGTTGCTGCTCTCATCTCACAGACATATTTAACCCTCATGTCTTTGCCATTTATTCGC AATCGATTCTACGAATTCTTCAAAGCCACGCACATCTTCGTGGCAGTGGTATTTGTCGTGTTTTTCTTCCTTCAC TGCGATTTCCGGCTCTCTTCTTGGGACTACTTCATAGCCTCAGGCGTGATCTATTTCTTAAGCATCATAGCCAGT CACATCCGTACCTATCTAATGCACGGCATCCACAACGCGACCATCGAACTCGTCCCTAGCGGTCTTGTCCGCGTT GCAGTCCCATCAATCATCAAATGGACACCAGGCCAGCACGTATTCGTGCGCTTCCTCACATCAGACTTACACCTA CTCACCGCCCACCCCTTCACCATCTCCTCCGCATGTCGCAATCCAGACGAAATAGGAAAAGCCTCAGAACTAGTA TTCTACATCAAAATCCGCAGCGGTGTCACCGGACGCCTTGGAGCAATGGCATCTAAGAATCCAGGCTGCACGAAG AAGATATTAATGGAGGGACCATATGGCGGCGTCAGCGAACCTCACATGGCGCGATTCGACACGATTTTAGTGATA GCCGGCGGCTCGGGAGGCGTGTTTTCACTAGCCATGGTAGACGAAGCACTCCGGCTGACGGGGATAAACGCACCG GCAGGCGAGAAACAAGCACTGTCCCGCCGGAACCTCCAAGTCGTCTACTCGACGCGCGACCACGCTATGGTAGAC TGGTACATCGATGAGATCAAATCACGGCTGTCTGAGTCGGACATGTTATCCGCGCAGTCGAACAACGGATTCGAG ACTGCGGTATCTGTGCACATAACTGACCCGCAGGGATTGGGAATTTCTTCTGCTTCGGAATCTGACGATGTTAAG AGCACGTTTGGTAAGGTGCCGCCGGCTGAGATTACCACTGCGGGGAGTTTCAGTTTGAATGTTCACCGCAATGCT CGGCCTGATATTCCTAGTTTGGTTGCGCGCACTGTTGCCATGGCACATGTTCAAGGGACACATCTTCAGAAGAAG CAGCGGGTTGGGATTTTGGTTTGTGGTCCTGCTTCTATGCTACATGATACTCGGAATGCGGCGGCTTTGGCGCAG GCCAGGGTGTTTGGGGGTGAGATTGAGGAGTTGTATTTGCATTCCGAGCCTTTCGTGTGGTGA |
| Transcript | >Pro_DTO377G3_2|g3167.t1 ATGATGGACATGAAGATGGCCGAGGGCACACCCTGGCTCGATCAGCCGGTGATGCTTCATTCGTCTCGCGCCGAC AAGTGCAAGCTGACCGAGTCTCAATGTCTCTATCGCAACTATCACTGGCGATACTGGTACCAAGCCGACCATGTT TACGCATTGAACACCGTCTACTTCATGTGTGCGGTGATTGGGGTGTTCGCGATCTCGAACTTGCTTGTACGATTC GCTCCAGATAGAGTGAAACGGACCAGACCATGGCGCATGTTCACCTCTGCCTCACGATACCTTTCTTATCGTGGA TATCGATTGCCTGCGCTGCGATATTGGTCTCCAGCATTAGGGGTGGTGATTCTAGGTGCTGTAGGCGCTGTCTTC TTCTTCGCGATGACACTCGGCCCGCAACCTTATTACTGGCCAACAGATGCTTCTTATGGAAGTAGTCCTCCGATT GCGACTCGATCGGGCTGGATGGCTCTTGCGCTGCTTCCATTTGTACTGGCACTGAGCACGAAAGCTAACATGATC TCTGGCGTGACCGGTATTCCGCATGAGAAACTTCAAGTGTTTCACCACTGGACTAGCTATGCGATGTTTGTGTTG GCCTTGATTCACACCTTCCCTTTCATCATATATCATATCTGGAAGGGGGATATGATGTATCAGTGGAAGACAAGT GTCGTTTACTGGACAGGGGTTGCTGCTCTCATCTCACAGACATATTTAACCCTCATGTCTTTGCCATTTATTCGC AATCGATTCTACGAATTCTTCAAAGCCACGCACATCTTCGTGGCAGTGGTATTTGTCGTGTTTTTCTTCCTTCAC TGCGATTTCCGGCTCTCTTCTTGGGACTACTTCATAGCCTCAGGCGTGATCTATTTCTTAAGCATCATAGCCAGT CACATCCGTACCTATCTAATGCACGGCATCCACAACGCGACCATCGAACTCGTCCCTAGCGGTCTTGTCCGCGTT GCAGTCCCATCAATCATCAAATGGACACCAGGCCAGCACGTATTCGTGCGCTTCCTCACATCAGACTTACACCTA CTCACCGCCCACCCCTTCACCATCTCCTCCGCATGTCGCAATCCAGACGAAATAGGAAAAGCCTCAGAACTAGTA TTCTACATCAAAATCCGCAGCGGTGTCACCGGACGCCTTGGAGCAATGGCATCTAAGAATCCAGGCTGCACGAAG AAGATATTAATGGAGGGACCATATGGCGGCGTCAGCGAACCTCACATGGCGCGATTCGACACGATTTTAGTGATA GCCGGCGGCTCGGGAGGCGTGTTTTCACTAGCCATGGTAGACGAAGCACTCCGGCTGACGGGGATAAACGCACCG GCAGGCGAGAAACAAGCACTGTCCCGCCGGAACCTCCAAGTCGTCTACTCGACGCGCGACCACGCTATGGTAGAC TGGTACATCGATGAGATCAAATCACGGCTGTCTGAGTCGGACATGTTATCCGCGCAGTCGAACAACGGATTCGAG ACTGCGGTATCTGTGCACATAACTGACCCGCAGGGATTGGGAATTTCTTCTGCTTCGGAATCTGACGATGTTAAG AGCACGTTTGGTAAGGTGCCGCCGGCTGAGATTACCACTGCGGGGAGTTTCAGTTTGAATGTTCACCGCAATGCT CGGCCTGATATTCCTAGTTTGGTTGCGCGCACTGTTGCCATGGCACATGTTCAAGGGACACATCTTCAGAAGAAG CAGCGGGTTGGGATTTTGGTTTGTGGTCCTGCTTCTATGCTACATGATACTCGGAATGCGGCGGCTTTGGCGCAG GCCAGGGTGTTTGGGGGTGAGATTGAGGAGTTGTATTTGCATTCCGAGCCTTTCGTGTGGTGA |
| Gene | >Pro_DTO377G3_2|g3167.t1 ATGATGGACATGAAGATGGCCGAGGGCACACCCTGGCTCGATCAGCCGGTGATGCTTCATTCGTCTCGCGCCGAC AAGTGCAAGCTGACCGAGTCTCAATGTCTCTATCGCAACTATCACTGGCGATACTGGTATGCATGTTCTTCCGAG TCACCTCCATGTATGTGTGCTTATCGGAAATCTGTTCTAGGTACCAAGCCGACCATGTTTACGCATTGAACACCG TCTACTTCATGTGTGCGGTGATTGGGGTGTTCGCGATCTCGAACTTGCTTGTACGATTCGCTCCAGATAGAGTGA AACGGACCAGACCATGGCGCATGTTCACCTCTGCCTCACGATACCTTTCTTATCGTGGATATCGATTGCCTGCGC TGCGATATTGGTCTCCAGCATTAGGGGTGGTGATTCTAGGTGCTGTAGGCGCTGTCTTCTTCTTCGGTGGGTGTC TTGGACTTGCGAGGATGTGACGGGGATGGTGGTTGACTTCTTTATAGCGATGACACTCGGCCCGCAACCTTATTA CTGGCCAACAGATGCTTCTTATGGAAGTAGTCCTCCGATTGCGACTCGATCGGGCTGGATGGCTCTTGCGCTGCT TCCATTTGTACTGTGGGTGTTGGATTCGGAGCATACAAGTCGGTTGCTGACCTTCTTTAGGGCACTGAGCACGAA AGCTAACATGATCTCTGGCGTGACCGGTATTCCGCATGAGAAACTTCAAGTGTTTCACCACTGGACTAGCTATGC GATGTTTGTGTTGGCCTTGATTCACACCTTCCCTTTCATCATATATCATATCTGGAAGGGGGATATGATGTATCA GTGGAAGACAAGTGTCGTTTACTGGACAGGGGTTGCTGCTCTCATCTCACAGACATATTTAACCCTCATGTCTTT GCCATTTATTCGGTAGGATCACACCTACCTAGCTTGACTACTAGAAGACTAACTCTTCCACAGCAATCGATTCTA CGAATTCTTCAAAGCCACGCACATCTTCGTGGCAGTGGTATTTGTCGTGTTTTTCTTCCTTCACTGCGATTTCCG GCTCTCTTCTTGGTAGGTTCGACTGCAATAAGCCCCATGATGACCTCGCATTAACATATATCAGGGACTACTTCA TAGCCTCAGGCGTGATCTATTTCTTAAGCATCATAGCCAGTCACATCCGTACCTATCTAATGCACGGCATCCACA ACGCGACCATCGAACTCGTCCCTAGCGGTCTTGTCCGCGTTGCAGTCCCATCAATCATCAAATGGACACCAGGCC AGCACGTATTCGTGCGCTTCCTCACATCAGACTTACACCTACTCACCGCCCACCCCTTCACCATCTCCTCCGCAT GTCGCAATCCAGACGAAATAGGAAAAGCCTCAGAACTAGTATTCTACATCAAAATCCGCAGCGGTGTCACCGGAC GCCTTGGAGCAATGGCATCTAAGAATCCAGGCTGCACGAAGAAGATATTAATGGAGGGACCATATGGCGGCGTCA GCGAACCTCACATGGCGCGATTCGACACGATTTTAGTGATAGCCGGCGGCTCGGGAGGCGTGTTTTCACTAGCCA TGGTAGACGAAGCACTCCGGCTGACGGGGATAAACGCACCGGCAGGCGAGAAACAAGCACTGTCCCGCCGGAACC TCCAAGTCGTCTACTCGACGCGCGACCACGCTATGGTAGACTGGTACATCGATGAGATCAAATCACGGCTGTCTG AGTCGGACATGTTATCCGCGCAGTCGAACAACGGATTCGAGACTGCGGTATCTGTGCACATAACTGACCCGCAGG GATTGGGAATTTCTTCTGCTTCGGAATCTGACGATGTTAAGAGCACGTTTGGTAAGGTGCCGCCGGCTGAGATTA CCACTGCGGGGAGTTTCAGTTTGAATGTTCACCGCAATGCTCGGCCTGATATTCCTAGTTTGGTTGCGCGCACTG TTGCCATGGCACATGTTCAAGGGACACATCTTCAGAAGAAGCAGCGGGTTGGGATTTTGGTTTGTGGTCCTGCTT CTATGCTACATGATACTCGGAATGCGGCGGCTTTGGCGCAGGCCAGGGTGTTTGGGGGTGAGATTGAGGAGTTGT ATTTGCATTCCGAGCCTTTCGTGTAAGTCTTTGGTTTCCTTGCTATATTATGACTATTGGCTAACTGGTTTCTAC AGGTGGTGA |