© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3153.t1 |
| Gene name | |
| Location | scaffold_04:842173..843481 |
| Strand | + |
| Gene length (bp) | 1308 |
| Transcript length (bp) | 1257 |
| Coding sequence length (bp) | 1257 |
| Protein length (aa) | 419 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 31 | 53 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 376.37 | 221.02 | 531.72 |
| 5d_25C | Five days - 25 degrees Celsius | 165.83 | 95.14 | 236.52 |
| 7d_25C | Seven days - 25 degrees Celsius | 231.29 | 123.18 | 339.40 |
| 10d_25C | Ten days - 25 degrees Celsius | 46.34 | 20.45 | 72.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 183.15 | 93.22 | 273.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 31.39 | 16.87 | 45.91 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.041414 | yes |
| 3d_25C | 7d_15C | 0.004045 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.195341 | no |
| 5d_25C | 7d_15C | 0.774860 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.438532 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.190958 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3153.t1 MERELLTMSRTQNLRDIESNNEKKHSHWRDWAFVLLWGATGYACIILMVLLYSNPKLIPFDICSLLFRKEISPFF AFSQGTGHYSKPQGFKIVALVPFHYHGRTEILDCYLQKNLVHNNGFLDQVIFVPQTDDAVDMEWLYSIVNQTPEY AISSRYHEIEWEVAKNNVMYIRIDGDIVFLEDNAIPTIVKTKLDNPSTLMVSANVINEAALASLHSHPGTALPYL PELYDVEQPSRSKLQLKHDWRASNLPNWQGPPSFKISKDFDPPFEGHRWLLPRDAGSDRDPIARSVYTDTGPTLH DWTVGAQQHYSFLHHLEHNDLGRYKFPMWVDPTEPTSDNFGCFWGNDAVDVHRIFRNNQNGSSHNWHMSDGSRPH IIIDGKGLVSHYSARQGAAGLDATDLITRYRAYAQEKVCLQTE* |
| Coding | >Pro_DTO377G3_2|g3153.t1 ATGGAGCGGGAGTTGTTGACCATGAGTCGTACCCAGAACCTTCGCGATATTGAGTCGAACAATGAGAAAAAGCAC TCGCACTGGCGCGATTGGGCCTTTGTCCTTCTGTGGGGTGCTACTGGCTATGCGTGCATCATTTTGATGGTGTTG CTCTACTCTAACCCGAAGCTTATACCCTTCGATATCTGTTCATTGCTGTTTCGCAAGGAGATTTCTCCATTCTTC GCATTCTCGCAAGGAACGGGTCATTACTCCAAGCCCCAAGGCTTCAAGATAGTCGCTCTAGTTCCCTTCCATTAC CATGGGCGTACCGAAATATTGGACTGCTATTTGCAGAAAAACTTGGTCCATAATAATGGATTTCTTGATCAGGTC ATCTTTGTGCCGCAGACTGATGACGCTGTCGACATGGAATGGCTTTATTCGATCGTGAATCAAACACCCGAGTAT GCCATTTCTTCTCGATATCATGAGATAGAATGGGAAGTTGCAAAGAATAATGTGATGTACATCCGAATCGACGGC GATATCGTGTTCCTGGAGGACAACGCCATTCCGACCATCGTCAAAACGAAACTCGACAATCCAAGCACGCTGATG GTATCGGCCAATGTGATAAACGAGGCAGCTCTCGCATCTCTCCACAGTCATCCGGGAACTGCACTCCCATATCTA CCTGAATTGTACGATGTGGAACAACCGTCCCGATCAAAGCTTCAACTGAAGCACGACTGGCGAGCTTCGAATCTT CCAAACTGGCAGGGCCCGCCGAGCTTCAAAATAAGCAAAGACTTTGATCCGCCATTTGAAGGGCATCGCTGGCTA CTCCCCAGGGATGCGGGTTCTGATCGAGATCCTATCGCGAGATCCGTATACACCGACACCGGTCCAACCCTGCAT GACTGGACTGTTGGTGCGCAGCAACATTACTCCTTTTTACACCACCTAGAACACAATGATTTGGGCCGTTACAAG TTCCCGATGTGGGTCGATCCAACCGAGCCCACCAGCGATAATTTTGGGTGCTTCTGGGGTAATGATGCAGTGGAT GTGCACCGTATTTTCCGCAACAACCAAAATGGATCCTCCCACAATTGGCATATGTCGGATGGCTCTCGTCCGCAT ATCATTATAGATGGCAAGGGGCTTGTTTCACATTATTCTGCTCGCCAAGGTGCGGCTGGTCTAGACGCCACGGAT CTCATAACTCGTTACCGAGCATATGCGCAGGAGAAAGTGTGTTTGCAGACTGAGTGA |
| Transcript | >Pro_DTO377G3_2|g3153.t1 ATGGAGCGGGAGTTGTTGACCATGAGTCGTACCCAGAACCTTCGCGATATTGAGTCGAACAATGAGAAAAAGCAC TCGCACTGGCGCGATTGGGCCTTTGTCCTTCTGTGGGGTGCTACTGGCTATGCGTGCATCATTTTGATGGTGTTG CTCTACTCTAACCCGAAGCTTATACCCTTCGATATCTGTTCATTGCTGTTTCGCAAGGAGATTTCTCCATTCTTC GCATTCTCGCAAGGAACGGGTCATTACTCCAAGCCCCAAGGCTTCAAGATAGTCGCTCTAGTTCCCTTCCATTAC CATGGGCGTACCGAAATATTGGACTGCTATTTGCAGAAAAACTTGGTCCATAATAATGGATTTCTTGATCAGGTC ATCTTTGTGCCGCAGACTGATGACGCTGTCGACATGGAATGGCTTTATTCGATCGTGAATCAAACACCCGAGTAT GCCATTTCTTCTCGATATCATGAGATAGAATGGGAAGTTGCAAAGAATAATGTGATGTACATCCGAATCGACGGC GATATCGTGTTCCTGGAGGACAACGCCATTCCGACCATCGTCAAAACGAAACTCGACAATCCAAGCACGCTGATG GTATCGGCCAATGTGATAAACGAGGCAGCTCTCGCATCTCTCCACAGTCATCCGGGAACTGCACTCCCATATCTA CCTGAATTGTACGATGTGGAACAACCGTCCCGATCAAAGCTTCAACTGAAGCACGACTGGCGAGCTTCGAATCTT CCAAACTGGCAGGGCCCGCCGAGCTTCAAAATAAGCAAAGACTTTGATCCGCCATTTGAAGGGCATCGCTGGCTA CTCCCCAGGGATGCGGGTTCTGATCGAGATCCTATCGCGAGATCCGTATACACCGACACCGGTCCAACCCTGCAT GACTGGACTGTTGGTGCGCAGCAACATTACTCCTTTTTACACCACCTAGAACACAATGATTTGGGCCGTTACAAG TTCCCGATGTGGGTCGATCCAACCGAGCCCACCAGCGATAATTTTGGGTGCTTCTGGGGTAATGATGCAGTGGAT GTGCACCGTATTTTCCGCAACAACCAAAATGGATCCTCCCACAATTGGCATATGTCGGATGGCTCTCGTCCGCAT ATCATTATAGATGGCAAGGGGCTTGTTTCACATTATTCTGCTCGCCAAGGTGCGGCTGGTCTAGACGCCACGGAT CTCATAACTCGTTACCGAGCATATGCGCAGGAGAAAGTGTGTTTGCAGACTGAGTGA |
| Gene | >Pro_DTO377G3_2|g3153.t1 ATGGAGCGGGAGTTGTTGACCATGAGTCGTACCCAGAACCTTCGCGATATTGAGTCGAACAATGAGAAAAAGCAC TCGCACTGGCGCGATTGGGCCTTTGTCCTTCTGTGGGGTGCTACTGGCTATGCGTGCATCATTTTGATGGTGTTG CTCTACTCTAACCCGAAGCTTATACCCTTCGATATCTGTTCATTGCTGTTTCGCAAGGAGATTTCTCCATTCTTC GCATTCTCGCAAGGAACGGGTCATTACTCCAAGCCCCAAGGCTTCAAGATAGTCGCTCTAGTTCCCTTCCATTAC CATGGGCGTACCGAAATATTGGACTGCTATTTGCAGGTATGCACAATCCTGCCGCTACTATATTGCTTGAGTCTA ACATAATTCAAGAAAAACTTGGTCCATAATAATGGATTTCTTGATCAGGTCATCTTTGTGCCGCAGACTGATGAC GCTGTCGACATGGAATGGCTTTATTCGATCGTGAATCAAACACCCGAGTATGCCATTTCTTCTCGATATCATGAG ATAGAATGGGAAGTTGCAAAGAATAATGTGATGTACATCCGAATCGACGGCGATATCGTGTTCCTGGAGGACAAC GCCATTCCGACCATCGTCAAAACGAAACTCGACAATCCAAGCACGCTGATGGTATCGGCCAATGTGATAAACGAG GCAGCTCTCGCATCTCTCCACAGTCATCCGGGAACTGCACTCCCATATCTACCTGAATTGTACGATGTGGAACAA CCGTCCCGATCAAAGCTTCAACTGAAGCACGACTGGCGAGCTTCGAATCTTCCAAACTGGCAGGGCCCGCCGAGC TTCAAAATAAGCAAAGACTTTGATCCGCCATTTGAAGGGCATCGCTGGCTACTCCCCAGGGATGCGGGTTCTGAT CGAGATCCTATCGCGAGATCCGTATACACCGACACCGGTCCAACCCTGCATGACTGGACTGTTGGTGCGCAGCAA CATTACTCCTTTTTACACCACCTAGAACACAATGATTTGGGCCGTTACAAGTTCCCGATGTGGGTCGATCCAACC GAGCCCACCAGCGATAATTTTGGGTGCTTCTGGGGTAATGATGCAGTGGATGTGCACCGTATTTTCCGCAACAAC CAAAATGGATCCTCCCACAATTGGCATATGTCGGATGGCTCTCGTCCGCATATCATTATAGATGGCAAGGGGCTT GTTTCACATTATTCTGCTCGCCAAGGTGCGGCTGGTCTAGACGCCACGGATCTCATAACTCGTTACCGAGCATAT GCGCAGGAGAAAGTGTGTTTGCAGACTGAGTGA |