© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3152.t1 |
| Gene name | |
| Location | scaffold_04:839390..841545 |
| Strand | - |
| Gene length (bp) | 2155 |
| Transcript length (bp) | 2034 |
| Coding sequence length (bp) | 2034 |
| Protein length (aa) | 678 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03109 | ABC1 | ABC1 atypical kinase-like domain | 2.4E-09 | 194 | 245 |
| PF03109 | ABC1 | ABC1 atypical kinase-like domain | 1.2E-31 | 284 | 432 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 116 | 138 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 59.80 | 36.76 | 82.84 |
| 5d_25C | Five days - 25 degrees Celsius | 68.83 | 42.15 | 95.52 |
| 7d_25C | Seven days - 25 degrees Celsius | 70.58 | 43.26 | 97.90 |
| 10d_25C | Ten days - 25 degrees Celsius | 75.01 | 45.74 | 104.28 |
| 7d_15C | Seven days - 15 degrees Celsius | 83.32 | 50.58 | 116.05 |
| 7d_30C | Seven days - 30 degrees Celsius | 50.54 | 30.22 | 70.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.588672 | no |
| 3d_25C | 7d_25C | 0.511830 | no |
| 3d_25C | 7d_15C | 0.126708 | no |
| 3d_25C | 7d_30C | 0.510872 | no |
| 3d_25C | 10d_25C | 0.338161 | no |
| 5d_25C | 7d_25C | 0.942066 | no |
| 5d_25C | 7d_15C | 0.433525 | no |
| 5d_25C | 7d_30C | 0.163564 | no |
| 5d_25C | 10d_25C | 0.766386 | no |
| 7d_25C | 7d_15C | 0.515684 | no |
| 7d_25C | 7d_30C | 0.132302 | no |
| 7d_25C | 10d_25C | 0.844545 | no |
| 7d_15C | 7d_30C | 0.014971 | yes |
| 7d_15C | 10d_25C | 0.705792 | no |
| 7d_30C | 10d_25C | 0.069111 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3152.t1 MRAAGLFGRFCLKRGLPRLPRQYFSRPLWPRQLKGTPRRAPVIGGVLMATLAPAAFLKLAAENDGHDKTAEMQML EASREEVRKMVSPDAQGFSKLCQTAWVYFYCYVYDPIATGIRFVHLAIIFIPVVATVPAIWLGRKVQGRDGARSG TLWWYRFLVKAMERAGPAFIKLGQWAASRTDIFPPEMCNIMSSLHSNAPAHSLYQTKRIICKAFNGLPFEDIFEE FQEEPLGVGAIAQVYKAKLKPNLAATNEEELGIEPQTLGEKVRKNVDVLVKSSPQRVPSSYVAIKVQHPSVDQMI HRDLRIMSFFAHMINVIPTMHWLSFPDEVQQFGEMMKLQLDLRIEAANLVIFRQKFNSRTTAWFPYPYLEYTTRE VLVEEFAQGIPLATFLDIGGGLYQHEIANEGLDAFLHMLLIDNFIHADLHPGNIMVRFYRPSELDLSLRKHSRAF DAPTRAEVDVTEAVLKRLRPHLNDPEDWKAALSQLNDEGYRPQLIFIDTGLVTQLNETNRRNFLDLFRAIAEFDG YRAGQLMVERCRTPEDVIDPEVFALKMQHLVLSIKSRTFALGSVKIGDILSEVLTMVRGHHVRFEGDFVNVVISC LLLEGIGRSLNPNLDLFKSALPILRQLGSGRSFLETVRSGDYSMLWVWVGLEARGMLQASIESVEHCVKYDQLSP NI* |
| Coding | >Pro_DTO377G3_2|g3152.t1 ATGAGGGCGGCCGGTCTCTTCGGCCGTTTCTGTCTCAAACGCGGGCTTCCGCGTCTCCCCCGACAATATTTCAGT CGTCCGCTATGGCCTCGGCAACTAAAAGGCACCCCGCGGAGGGCTCCCGTAATAGGTGGGGTGCTCATGGCCACT CTGGCACCAGCGGCCTTTTTGAAACTGGCGGCAGAGAATGATGGCCACGATAAGACCGCGGAAATGCAGATGCTG GAGGCTTCGCGCGAGGAGGTACGGAAGATGGTCTCACCCGACGCGCAAGGTTTTTCGAAGCTCTGTCAGACAGCA TGGGTCTATTTTTATTGCTATGTCTATGACCCTATTGCTACAGGGATCCGATTCGTGCACCTTGCCATCATATTC ATTCCGGTCGTCGCCACGGTGCCTGCCATCTGGCTTGGTCGCAAAGTGCAGGGCCGGGATGGCGCGCGGTCTGGC ACATTGTGGTGGTATCGGTTCTTGGTCAAGGCAATGGAACGGGCCGGTCCTGCGTTTATCAAGCTCGGCCAATGG GCTGCTTCACGGACAGATATCTTCCCACCGGAAATGTGCAACATAATGTCGTCACTTCACTCAAATGCCCCCGCC CACTCACTTTACCAAACGAAGCGTATTATCTGCAAAGCATTCAACGGACTGCCATTCGAGGACATATTCGAAGAG TTCCAGGAGGAACCGCTGGGCGTTGGTGCGATTGCACAGGTCTATAAGGCGAAGTTGAAACCGAACCTTGCTGCA ACCAATGAAGAAGAACTGGGAATCGAACCACAAACACTGGGCGAGAAGGTTCGAAAAAATGTCGACGTGCTAGTC AAGAGCTCCCCGCAGCGGGTGCCATCATCGTATGTTGCGATCAAGGTGCAGCACCCCAGTGTTGATCAAATGATC CATAGAGACCTGCGGATCATGTCATTTTTTGCTCACATGATCAATGTCATCCCCACGATGCACTGGCTTTCTTTC CCCGACGAAGTACAACAGTTTGGTGAAATGATGAAACTACAACTAGACCTTCGAATTGAAGCCGCCAATCTCGTC ATATTCCGCCAGAAGTTCAATTCTCGCACTACTGCTTGGTTCCCATACCCATACTTAGAATACACCACCCGTGAG GTGTTGGTTGAGGAATTTGCCCAGGGCATTCCGTTGGCCACCTTCTTGGATATTGGAGGGGGTCTATATCAGCAC GAGATTGCTAATGAAGGCCTCGATGCATTTTTGCATATGCTGCTCATAGACAATTTTATCCATGCCGATCTCCAT CCGGGGAACATCATGGTTCGTTTCTACAGGCCTAGCGAGCTAGACCTCTCCCTTCGCAAGCATTCGCGTGCGTTC GATGCCCCGACACGGGCCGAAGTTGATGTGACAGAGGCAGTCCTCAAGCGGTTACGTCCGCATCTCAATGACCCG GAGGACTGGAAGGCTGCTCTTTCCCAGCTCAACGACGAGGGGTATCGTCCGCAGTTGATATTTATCGACACTGGT CTTGTCACCCAGCTAAATGAGACCAACCGACGGAACTTCCTGGACCTCTTTCGAGCTATTGCTGAATTCGACGGA TACCGGGCTGGTCAGCTTATGGTCGAGCGGTGCCGAACACCGGAAGATGTCATTGACCCGGAGGTATTTGCACTG AAAATGCAGCATTTGGTTCTGAGTATCAAGTCTCGAACCTTCGCTCTGGGGAGTGTCAAGATTGGTGATATCCTT AGTGAGGTATTGACTATGGTCCGCGGACACCATGTTCGGTTTGAAGGAGATTTTGTCAACGTCGTCATTTCATGT CTTCTGCTTGAAGGAATAGGACGTAGTTTGAACCCCAATCTAGACCTGTTTAAGAGTGCACTTCCTATTCTACGA CAATTGGGGTCTGGCCGTTCATTCTTGGAAACTGTGCGCTCGGGCGACTACTCAATGCTCTGGGTTTGGGTCGGC CTGGAGGCTCGTGGAATGCTGCAGGCCAGCATCGAGAGTGTTGAGCATTGCGTCAAGTACGACCAACTTTCCCCT AATATATAA |
| Transcript | >Pro_DTO377G3_2|g3152.t1 ATGAGGGCGGCCGGTCTCTTCGGCCGTTTCTGTCTCAAACGCGGGCTTCCGCGTCTCCCCCGACAATATTTCAGT CGTCCGCTATGGCCTCGGCAACTAAAAGGCACCCCGCGGAGGGCTCCCGTAATAGGTGGGGTGCTCATGGCCACT CTGGCACCAGCGGCCTTTTTGAAACTGGCGGCAGAGAATGATGGCCACGATAAGACCGCGGAAATGCAGATGCTG GAGGCTTCGCGCGAGGAGGTACGGAAGATGGTCTCACCCGACGCGCAAGGTTTTTCGAAGCTCTGTCAGACAGCA TGGGTCTATTTTTATTGCTATGTCTATGACCCTATTGCTACAGGGATCCGATTCGTGCACCTTGCCATCATATTC ATTCCGGTCGTCGCCACGGTGCCTGCCATCTGGCTTGGTCGCAAAGTGCAGGGCCGGGATGGCGCGCGGTCTGGC ACATTGTGGTGGTATCGGTTCTTGGTCAAGGCAATGGAACGGGCCGGTCCTGCGTTTATCAAGCTCGGCCAATGG GCTGCTTCACGGACAGATATCTTCCCACCGGAAATGTGCAACATAATGTCGTCACTTCACTCAAATGCCCCCGCC CACTCACTTTACCAAACGAAGCGTATTATCTGCAAAGCATTCAACGGACTGCCATTCGAGGACATATTCGAAGAG TTCCAGGAGGAACCGCTGGGCGTTGGTGCGATTGCACAGGTCTATAAGGCGAAGTTGAAACCGAACCTTGCTGCA ACCAATGAAGAAGAACTGGGAATCGAACCACAAACACTGGGCGAGAAGGTTCGAAAAAATGTCGACGTGCTAGTC AAGAGCTCCCCGCAGCGGGTGCCATCATCGTATGTTGCGATCAAGGTGCAGCACCCCAGTGTTGATCAAATGATC CATAGAGACCTGCGGATCATGTCATTTTTTGCTCACATGATCAATGTCATCCCCACGATGCACTGGCTTTCTTTC CCCGACGAAGTACAACAGTTTGGTGAAATGATGAAACTACAACTAGACCTTCGAATTGAAGCCGCCAATCTCGTC ATATTCCGCCAGAAGTTCAATTCTCGCACTACTGCTTGGTTCCCATACCCATACTTAGAATACACCACCCGTGAG GTGTTGGTTGAGGAATTTGCCCAGGGCATTCCGTTGGCCACCTTCTTGGATATTGGAGGGGGTCTATATCAGCAC GAGATTGCTAATGAAGGCCTCGATGCATTTTTGCATATGCTGCTCATAGACAATTTTATCCATGCCGATCTCCAT CCGGGGAACATCATGGTTCGTTTCTACAGGCCTAGCGAGCTAGACCTCTCCCTTCGCAAGCATTCGCGTGCGTTC GATGCCCCGACACGGGCCGAAGTTGATGTGACAGAGGCAGTCCTCAAGCGGTTACGTCCGCATCTCAATGACCCG GAGGACTGGAAGGCTGCTCTTTCCCAGCTCAACGACGAGGGGTATCGTCCGCAGTTGATATTTATCGACACTGGT CTTGTCACCCAGCTAAATGAGACCAACCGACGGAACTTCCTGGACCTCTTTCGAGCTATTGCTGAATTCGACGGA TACCGGGCTGGTCAGCTTATGGTCGAGCGGTGCCGAACACCGGAAGATGTCATTGACCCGGAGGTATTTGCACTG AAAATGCAGCATTTGGTTCTGAGTATCAAGTCTCGAACCTTCGCTCTGGGGAGTGTCAAGATTGGTGATATCCTT AGTGAGGTATTGACTATGGTCCGCGGACACCATGTTCGGTTTGAAGGAGATTTTGTCAACGTCGTCATTTCATGT CTTCTGCTTGAAGGAATAGGACGTAGTTTGAACCCCAATCTAGACCTGTTTAAGAGTGCACTTCCTATTCTACGA CAATTGGGGTCTGGCCGTTCATTCTTGGAAACTGTGCGCTCGGGCGACTACTCAATGCTCTGGGTTTGGGTCGGC CTGGAGGCTCGTGGAATGCTGCAGGCCAGCATCGAGAGTGTTGAGCATTGCGTCAAGTACGACCAACTTTCCCCT AATATATAA |
| Gene | >Pro_DTO377G3_2|g3152.t1 ATGAGGGCGGCCGGTCTCTTCGGCCGTTTCTGTCTCAAACGCGGGCTTCCGCGTCTCCCCCGACAATATTTCAGT CGTCCGCTATGGCCTCGGCAACTAAAAGGCACCCCGCGGAGGGCTCCCGTAATAGGTGGGGTGCTCATGGCCACT CTGGCACCAGCGGCCTTTTTGAAACTGGCGGCAGAGAATGATGGCCACGATAAGACCGCGGAAATGCAGATGCTG GAGGCTTCGCGCGAGGAGGTACGGAAGATGGTCTCACCCGACGCGCAAGGTTTTTCGAAGCTCTGTCAGACAGCA TGGGTCTATTTTTATTGCTATGTCTATGACCCTATTGCTACAGGGATCCGATTCGTGCACCTTGCCATCATATTC ATTCCGGTCGTCGCCACGGTGCCTGCCATCTGGCTTGGTCGCAAAGTGCAGGGCCGGGATGGCGCGCGGTCTGGC ACATTGTGGTGGTATCGGTTCTTGGTCAAGGCAATGGAACGGGCCGGTCCTGCGTTTATCAAGGTACGTTTGGTT GGCTAATAACTGTCCATTGAGACGGAACTTACAAGCTGACTTCTTGAATAGCTCGGCCAATGGGCTGCTTCACGG ACAGATATCTTCCCACCGGAAATGTGCAACATAATGTCGTCACTTCACTCAAATGCCCCCGCCCACTCACTTTAC CAAACGAAGCGTATTATCTGCAAAGCATTCAACGGACTGCCATTCGAGGACATATTCGAAGAGTTCCAGGAGGAA CCGCTGGGCGTTGGTGCGATTGCACAGGTCTATAAGGCGAAGTTGAAACCGAACCTTGCTGCAACCAATGAAGAA GAACTGGGAATCGAACCACAAACACTGGGCGAGAAGGTTCGAAAAAATGTCGACGTGCTAGTCAAGAGCTCCCCG CAGCGGGTGCCATCATCGTATGTTGCGATCAAGGTGCAGCACCCCAGTGTTGATCAAATGATCCATAGAGACCTG CGGATCATGTCATTTTTTGCTCACATGATCAATGTCATCCCCACGATGCACTGGCTTTCTTTCCCCGACGAAGTA CAACAGTTTGGTGAAATGATGAAACTACAACTAGACCTTCGAATTGAAGCCGCCAATCTCGTCATATTCCGCCAG AAGTTCAATTCTCGCACTACTGCTTGGTTCCCATACCCATACTTAGAATACACCACCCGTGAGGTGTTGGTTGAG GAATTTGCCCAGGGCATTCCGTTGGCCACCTTCTTGGATATTGGAGGGGGTCTATATCAGCACGAGATTGCTAAT GAAGGCCTCGATGCATTTTTGCATATGCTGCTCATAGACAATTTTATCCATGCCGATCTCCATCCGGGGAACATC ATGGTTCGTTTCTACAGGCCTAGCGAGCTAGACCTCTCCCTTCGCAAGCATTCGCGTGCGTTCGATGCCCCGACA CGGGCCGAAGTTGATGTGACAGAGGCAGTCCTCAAGCGGTTACGTCCGCATCTCAATGACCCGGAGGACTGGAAG GCTGCTCTTTCCCAGCTCAACGACGAGGGGTATCGTCCGCAGTTGATATTTATCGACACTGGTCTTGTCACCCAG CTAAATGAGACCAACCGACGGAACTTCCTGGACCTCTTTCGAGCTATTGCTGAATTCGACGGATACCGGGCTGGT CAGCTTATGGTCGAGCGGTGCCGAACACCGGAAGATGTCATTGACCCGGAGGTATTTGCACTGAAAATGCAGCAT TTGGTTCTGAGTATCAAGTCTCGAACCTTCGCTCTGGGGAGTGTCAAGATTGGTGATATCCTTAGTGAGGTATTG ACTATGGTCCGCGGACACCATGTTCGGTTTGAAGGAGATTTTGTCAACGTCGTCATTTCATGTCTTCTGCTTGAA GGAATAGGACGTAGTTTGAACCCCAATCTAGACCTGTTTAAGAGGTGAGTTTTCTCTTCCACGAGGCTTTCTACT TGTTCAACTGAAGCTGACTTTGTCTAGTGCACTTCCTATTCTACGACAATTGGGGTCTGGCCGTTCATTCTTGGA AACTGTGCGCTCGGGCGACTACTCAATGCTCTGGGTTTGGGTCGGCCTGGAGGCTCGTGGAATGCTGCAGGCCAG CATCGAGAGTGTTGAGCATTGCGTCAAGTACGACCAACTTTCCCCTAATATATAA |