© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g314.t1 |
| Gene name | |
| Location | scaffold_01:796610..797313 |
| Strand | + |
| Gene length (bp) | 703 |
| Transcript length (bp) | 603 |
| Coding sequence length (bp) | 603 |
| Protein length (aa) | 201 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1065.34 | 606.49 | 1524.20 |
| 5d_25C | Five days - 25 degrees Celsius | 595.26 | 332.71 | 857.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 521.16 | 286.04 | 756.29 |
| 10d_25C | Ten days - 25 degrees Celsius | 312.92 | 167.25 | 458.60 |
| 7d_15C | Seven days - 15 degrees Celsius | 469.46 | 185.10 | 753.82 |
| 7d_30C | Seven days - 30 degrees Celsius | 586.60 | 307.69 | 865.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.009446 | yes |
| 3d_25C | 7d_25C | 0.001804 | yes |
| 3d_25C | 7d_15C | 0.003197 | yes |
| 3d_25C | 7d_30C | 0.011062 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.671412 | no |
| 5d_25C | 7d_15C | 0.460452 | no |
| 5d_25C | 7d_30C | 0.971240 | no |
| 5d_25C | 10d_25C | 0.003197 | yes |
| 7d_25C | 7d_15C | 0.788925 | no |
| 7d_25C | 7d_30C | 0.722116 | no |
| 7d_25C | 10d_25C | 0.032612 | yes |
| 7d_15C | 7d_30C | 0.511419 | no |
| 7d_15C | 10d_25C | 0.177586 | no |
| 7d_30C | 10d_25C | 0.007091 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g314.t1 MRSSIIFLSALATAVMADNSTDTYTFPAGFNIGLVDSGTLSSWCSAQRNTCPDLCSSGTKLNSCDPTTLKFSCVC SDGSTPNVTSYIQTVPFYVCQATYGQCINSHPNDAEGQRACKQASADCGSKNASAVTTTSSAAATSASATSTLAL ATTTDSSTTATSSVAAASTTTNAAVALGDLTQYSTGLMAGLMFVAARMIL* |
| Coding | >Pro_DTO377G3_2|g314.t1 ATGCGTTCCTCAATTATCTTCCTTTCAGCTCTGGCTACTGCTGTCATGGCTGACAATTCCACTGACACTTACACC TTCCCCGCTGGCTTCAATATTGGTCTGGTGGATAGCGGCACCCTGAGCTCCTGGTGCTCTGCTCAGCGCAACACC TGCCCCGATCTTTGCTCAAGTGGTACCAAGCTGAACTCTTGCGACCCGACCACCCTGAAGTTCAGCTGTGTCTGC AGCGATGGTTCAACCCCAAATGTGACCTCCTACATTCAGACCGTTCCTTTCTACGTCTGCCAGGCTACTTACGGC CAGTGCATCAACTCGCACCCCAACGATGCTGAGGGCCAGCGCGCCTGCAAGCAGGCATCGGCCGACTGTGGCTCC AAGAACGCAAGTGCGGTGACCACCACCTCTTCTGCTGCTGCGACTTCGGCCAGCGCTACGAGCACTCTGGCATTG GCCACTACGACCGATTCTTCCACCACTGCCACTTCCTCCGTCGCTGCTGCCAGCACTACCACCAACGCTGCTGTG GCCCTCGGTGATCTGACCCAGTACTCCACTGGTCTGATGGCTGGTCTCATGTTCGTTGCTGCGCGCATGATCCTG TAA |
| Transcript | >Pro_DTO377G3_2|g314.t1 ATGCGTTCCTCAATTATCTTCCTTTCAGCTCTGGCTACTGCTGTCATGGCTGACAATTCCACTGACACTTACACC TTCCCCGCTGGCTTCAATATTGGTCTGGTGGATAGCGGCACCCTGAGCTCCTGGTGCTCTGCTCAGCGCAACACC TGCCCCGATCTTTGCTCAAGTGGTACCAAGCTGAACTCTTGCGACCCGACCACCCTGAAGTTCAGCTGTGTCTGC AGCGATGGTTCAACCCCAAATGTGACCTCCTACATTCAGACCGTTCCTTTCTACGTCTGCCAGGCTACTTACGGC CAGTGCATCAACTCGCACCCCAACGATGCTGAGGGCCAGCGCGCCTGCAAGCAGGCATCGGCCGACTGTGGCTCC AAGAACGCAAGTGCGGTGACCACCACCTCTTCTGCTGCTGCGACTTCGGCCAGCGCTACGAGCACTCTGGCATTG GCCACTACGACCGATTCTTCCACCACTGCCACTTCCTCCGTCGCTGCTGCCAGCACTACCACCAACGCTGCTGTG GCCCTCGGTGATCTGACCCAGTACTCCACTGGTCTGATGGCTGGTCTCATGTTCGTTGCTGCGCGCATGATCCTG TAA |
| Gene | >Pro_DTO377G3_2|g314.t1 ATGCGTTCCTCAATTATCTTCCTTTCAGCTCTGGCTACTGCTGTCATGGCTGACAATTCCACTGACACTTACACC TTCCCCGCTGGCTTCAATATTGGTCTGGTGGATAGCGGCACCCTGAGTATGTACCCCGACCAATTCTGACACGAC GAAGCGCTAATGAAGTAGGCTCCTGGTGCTCTGCTCAGCGCAACACCTGCCCCGATCTTTGCTCAAGTGGTACCA AGCTGAACTCTTGCGACCCGGTATGTTGTTGTGTATCGCGTCCATACGACCGGGAGATTAACGCTTTGAACAGAC CACCCTGAAGTTCAGCTGTGTCTGCAGCGATGGTTCAACCCCAAATGTGACCTCCTACATTCAGACCGTTCCTTT CTACGTCTGCCAGGCTACTTACGGCCAGTGCATCAACTCGCACCCCAACGATGCTGAGGGCCAGCGCGCCTGCAA GCAGGCATCGGCCGACTGTGGCTCCAAGAACGCAAGTGCGGTGACCACCACCTCTTCTGCTGCTGCGACTTCGGC CAGCGCTACGAGCACTCTGGCATTGGCCACTACGACCGATTCTTCCACCACTGCCACTTCCTCCGTCGCTGCTGC CAGCACTACCACCAACGCTGCTGTGGCCCTCGGTGATCTGACCCAGTACTCCACTGGTCTGATGGCTGGTCTCAT GTTCGTTGCTGCGCGCATGATCCTGTAA |