Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3139.t1
Gene name
Locationscaffold_04:808093..808582
Strand+
Gene length (bp)489
Transcript length (bp)405
Coding sequence length (bp)405
Protein length (aa) 135

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14138 COX16 Cytochrome c oxidase assembly protein COX16 9.7E-30 38 128

GO

GO Term Description Terminal node
GO:0031966 mitochondrial membrane Yes
GO:0016020 membrane No
GO:0031090 organelle membrane No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.5

Transmembrane Domains

Domain # Start End Length
1 36 58 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3139.t1
MPVFQSKTFRRAATESSSLGERLGAFYRARLARHPFILFGLPFMAVIVAGSFALTPAAALRYERYDRKVKQLSQD
EAFDLGLKGPDGEEGIKRNPRRRIIGDEKEEYYRLMAKDLDQWEQKRVQRFKGEPDGRL*
Coding >Pro_DTO377G3_2|g3139.t1
ATGCCTGTGTTCCAATCCAAAACCTTTCGTCGGGCAGCTACGGAATCATCGTCCCTCGGCGAACGGCTCGGTGCG
TTCTACCGGGCGCGACTGGCTCGACACCCTTTCATTCTCTTCGGACTTCCATTCATGGCCGTTATTGTAGCCGGG
TCATTTGCCTTGACGCCTGCTGCTGCCCTACGGTACGAGCGGTATGACCGCAAAGTCAAGCAGCTCAGTCAAGAC
GAAGCATTTGATCTCGGACTTAAGGGTCCTGACGGGGAAGAGGGAATCAAACGCAACCCACGGAGGAGGATTATA
GGCGACGAAAAGGAAGAATACTACAGACTCATGGCCAAAGATCTCGATCAATGGGAGCAGAAGCGAGTACAGCGA
TTCAAAGGTGAACCGGATGGAAGGCTGTAA
Transcript >Pro_DTO377G3_2|g3139.t1
ATGCCTGTGTTCCAATCCAAAACCTTTCGTCGGGCAGCTACGGAATCATCGTCCCTCGGCGAACGGCTCGGTGCG
TTCTACCGGGCGCGACTGGCTCGACACCCTTTCATTCTCTTCGGACTTCCATTCATGGCCGTTATTGTAGCCGGG
TCATTTGCCTTGACGCCTGCTGCTGCCCTACGGTACGAGCGGTATGACCGCAAAGTCAAGCAGCTCAGTCAAGAC
GAAGCATTTGATCTCGGACTTAAGGGTCCTGACGGGGAAGAGGGAATCAAACGCAACCCACGGAGGAGGATTATA
GGCGACGAAAAGGAAGAATACTACAGACTCATGGCCAAAGATCTCGATCAATGGGAGCAGAAGCGAGTACAGCGA
TTCAAAGGTGAACCGGATGGAAGGCTGTAA
Gene >Pro_DTO377G3_2|g3139.t1
ATGCCTGTGTTCCAATCCAAAACCTTTCGTCGGGCAGCTACGGAATCATCGTCCCTCGGCGAACGGCTCGGTGCG
TTCTACCGGGCGCGACTGGCTCGACACCCTTTCATTCTCTTCGGACTTCCATTCATGGCCGTTATTGTAGCCGGG
TCATTTGCCTTGACGCCTGCTGCTGCCCTACGGTACGAGCGGTATGACCGCAAAGTCAAGCAGCTCAGTCAAGAC
GAAGCATTTGATCTCGGACTTAAGGGTCCTGACGGGGAAGAGGGAATCAAACGCAACCCACGGAGGAGGATTATA
GGCGACGAAAAGGAAGAATACTACGTATGTATTGTTTTATTGTTTAATTAATCCTGACTTTCTTGTCTGACATTT
GGACTGAATGCTGATTATTGTATACGCTTACAGAGACTCATGGCCAAAGATCTCGATCAATGGGAGCAGAAGCGA
GTACAGCGATTCAAAGGTGAACCGGATGGAAGGCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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