Protein ID | Pro_DTO377G3_2|g3136.t1 |
Gene name | |
Location | scaffold_04:799926..801672 |
Strand | - |
Gene length (bp) | 1746 |
Transcript length (bp) | 1692 |
Coding sequence length (bp) | 1692 |
Protein length (aa) | 564 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00415 | RCC1 | Regulator of chromosome condensation (RCC1) repeat | 1.3E-06 | 145 | 197 |
PF00415 | RCC1 | Regulator of chromosome condensation (RCC1) repeat | 6.6E-05 | 200 | 276 |
PF00415 | RCC1 | Regulator of chromosome condensation (RCC1) repeat | 3.9E-09 | 279 | 329 |
PF00415 | RCC1 | Regulator of chromosome condensation (RCC1) repeat | 1.7E-10 | 333 | 383 |
PF00415 | RCC1 | Regulator of chromosome condensation (RCC1) repeat | 3.7E-07 | 387 | 440 |
PF13540 | RCC1_2 | Regulator of chromosome condensation (RCC1) repeat | 2.5E-06 | 316 | 344 |
PF13540 | RCC1_2 | Regulator of chromosome condensation (RCC1) repeat | 2.1E-08 | 370 | 398 |
Orthofinder run ID | 2 |
Orthogroup | 1278 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g3136.t1 MPPKKNTSKPVEASTETVKRSTRLRTSARQITMTKAETPVKESTKAAAKSTTKSIEKPTAKPTAKATAKSTTKST TKPTATSTKSTAKPSKMATSTKLTSATKKRKADEDEEKPREIKRSRVAQPRQPKPKVKVIINEAPKTKLNVFVCG EGSSGELGLGTAKNVIDVKRPRLNKLLSAEEVGVVQVAVGGMHCLALTHDNKIFSWGVNDQGALGRETEWDGGYK DIENDSDSDSDDEDSGLNPRESIPTAIPVTAFPEGTVFVEVAAADSASFALTDDGLVYGWGTFRSNDGILGFDAS SHVQTIPTLISSLKKIKHLTCGANHVLALNDQGRVYSWGSGQQNQLGRRIVERNRLNGLQPREFGLPKNIVHIGS GSYHSFAVHATGKVYAWGLNSFGATALREGAGDDEAAIVHPTLVESLSDKNISQICGGAHHSIAIAGDGECLVWG RLDGFQSGLKIDALSDDAVIKDERDRPRILIAPTPVPGIKAKVVAAASDHSLAIDSDGRAWSWGFSATYQTGQGT QDDIEVATVIDNTATRGKKLNWAGAGGQFSVFTEPASA* |
Coding | >Pro_DTO377G3_2|g3136.t1 ATGCCTCCTAAGAAGAACACGTCCAAGCCCGTCGAGGCTTCAACCGAGACGGTAAAGAGAAGTACTCGACTACGC ACCAGCGCCAGGCAGATCACTATGACAAAGGCCGAAACCCCCGTGAAAGAGTCTACAAAGGCAGCTGCAAAATCC ACCACTAAGTCCATTGAAAAACCTACCGCAAAGCCGACTGCAAAGGCTACTGCAAAGTCCACTACAAAGTCCACT ACGAAGCCGACTGCAACATCTACCAAGTCAACTGCGAAGCCAAGCAAAATGGCAACATCTACCAAATTGACCTCT GCTACGAAGAAGCGCAAAGCTGATGAAGATGAGGAGAAACCTCGCGAAATCAAAAGATCTCGTGTCGCGCAACCC CGTCAGCCAAAGCCGAAAGTCAAAGTTATCATCAACGAGGCCCCGAAAACTAAACTGAATGTATTCGTCTGTGGT GAGGGTAGCTCTGGTGAGCTGGGGTTGGGCACAGCTAAGAATGTTATCGATGTGAAGCGCCCACGTTTGAATAAG CTTCTGTCTGCCGAAGAAGTCGGAGTTGTACAGGTTGCTGTCGGTGGCATGCACTGTCTAGCTCTAACGCATGAC AACAAGATATTCTCCTGGGGTGTGAACGATCAGGGTGCGCTCGGAAGAGAAACTGAATGGGACGGTGGATACAAG GACATTGAGAACGACAGCGATTCCGATTCCGATGATGAAGACAGTGGATTAAACCCCCGGGAGTCTATTCCCACT GCTATTCCCGTCACCGCTTTCCCCGAAGGCACTGTCTTCGTTGAAGTCGCCGCCGCCGATAGCGCAAGCTTTGCC TTGACCGATGATGGTCTAGTCTATGGCTGGGGCACCTTCCGAAGCAACGATGGAATCCTCGGATTTGACGCGTCT TCTCACGTTCAAACGATCCCAACTTTGATCTCGTCTTTGAAGAAGATCAAACACCTGACTTGCGGAGCTAATCAC GTTCTTGCCCTGAACGACCAAGGTCGCGTCTACTCGTGGGGCTCAGGACAACAGAATCAGCTCGGTCGCAGGATC GTGGAGCGCAACAGGCTGAATGGTCTTCAGCCCCGAGAGTTCGGTCTCCCTAAGAACATCGTCCACATCGGGAGT GGCTCGTACCACTCGTTTGCTGTTCACGCCACTGGCAAGGTCTATGCCTGGGGATTGAATAGCTTCGGTGCAACC GCCCTCCGCGAGGGCGCTGGCGACGATGAAGCTGCTATCGTGCATCCCACTCTTGTCGAATCACTTTCTGACAAA AATATTTCACAAATCTGCGGCGGCGCTCATCATTCGATTGCCATTGCTGGCGATGGTGAATGCTTGGTTTGGGGC CGTCTTGACGGTTTCCAAAGCGGCCTTAAGATCGATGCACTTTCCGATGACGCCGTTATCAAGGATGAGCGCGAT CGCCCCCGTATCCTGATCGCGCCTACCCCTGTTCCGGGTATCAAGGCCAAGGTTGTGGCGGCTGCCTCGGATCAT TCTCTCGCTATCGATTCCGATGGCCGTGCATGGTCATGGGGTTTCTCTGCTACCTATCAAACGGGACAAGGTACA CAGGATGACATCGAGGTGGCTACTGTTATCGATAACACTGCTACTCGTGGAAAGAAATTGAACTGGGCGGGTGCC GGTGGTCAGTTCTCTGTGTTCACGGAGCCTGCCAGCGCGTGA |
Transcript | >Pro_DTO377G3_2|g3136.t1 ATGCCTCCTAAGAAGAACACGTCCAAGCCCGTCGAGGCTTCAACCGAGACGGTAAAGAGAAGTACTCGACTACGC ACCAGCGCCAGGCAGATCACTATGACAAAGGCCGAAACCCCCGTGAAAGAGTCTACAAAGGCAGCTGCAAAATCC ACCACTAAGTCCATTGAAAAACCTACCGCAAAGCCGACTGCAAAGGCTACTGCAAAGTCCACTACAAAGTCCACT ACGAAGCCGACTGCAACATCTACCAAGTCAACTGCGAAGCCAAGCAAAATGGCAACATCTACCAAATTGACCTCT GCTACGAAGAAGCGCAAAGCTGATGAAGATGAGGAGAAACCTCGCGAAATCAAAAGATCTCGTGTCGCGCAACCC CGTCAGCCAAAGCCGAAAGTCAAAGTTATCATCAACGAGGCCCCGAAAACTAAACTGAATGTATTCGTCTGTGGT GAGGGTAGCTCTGGTGAGCTGGGGTTGGGCACAGCTAAGAATGTTATCGATGTGAAGCGCCCACGTTTGAATAAG CTTCTGTCTGCCGAAGAAGTCGGAGTTGTACAGGTTGCTGTCGGTGGCATGCACTGTCTAGCTCTAACGCATGAC AACAAGATATTCTCCTGGGGTGTGAACGATCAGGGTGCGCTCGGAAGAGAAACTGAATGGGACGGTGGATACAAG GACATTGAGAACGACAGCGATTCCGATTCCGATGATGAAGACAGTGGATTAAACCCCCGGGAGTCTATTCCCACT GCTATTCCCGTCACCGCTTTCCCCGAAGGCACTGTCTTCGTTGAAGTCGCCGCCGCCGATAGCGCAAGCTTTGCC TTGACCGATGATGGTCTAGTCTATGGCTGGGGCACCTTCCGAAGCAACGATGGAATCCTCGGATTTGACGCGTCT TCTCACGTTCAAACGATCCCAACTTTGATCTCGTCTTTGAAGAAGATCAAACACCTGACTTGCGGAGCTAATCAC GTTCTTGCCCTGAACGACCAAGGTCGCGTCTACTCGTGGGGCTCAGGACAACAGAATCAGCTCGGTCGCAGGATC GTGGAGCGCAACAGGCTGAATGGTCTTCAGCCCCGAGAGTTCGGTCTCCCTAAGAACATCGTCCACATCGGGAGT GGCTCGTACCACTCGTTTGCTGTTCACGCCACTGGCAAGGTCTATGCCTGGGGATTGAATAGCTTCGGTGCAACC GCCCTCCGCGAGGGCGCTGGCGACGATGAAGCTGCTATCGTGCATCCCACTCTTGTCGAATCACTTTCTGACAAA AATATTTCACAAATCTGCGGCGGCGCTCATCATTCGATTGCCATTGCTGGCGATGGTGAATGCTTGGTTTGGGGC CGTCTTGACGGTTTCCAAAGCGGCCTTAAGATCGATGCACTTTCCGATGACGCCGTTATCAAGGATGAGCGCGAT CGCCCCCGTATCCTGATCGCGCCTACCCCTGTTCCGGGTATCAAGGCCAAGGTTGTGGCGGCTGCCTCGGATCAT TCTCTCGCTATCGATTCCGATGGCCGTGCATGGTCATGGGGTTTCTCTGCTACCTATCAAACGGGACAAGGTACA CAGGATGACATCGAGGTGGCTACTGTTATCGATAACACTGCTACTCGTGGAAAGAAATTGAACTGGGCGGGTGCC GGTGGTCAGTTCTCTGTGTTCACGGAGCCTGCCAGCGCGTGA |
Gene | >Pro_DTO377G3_2|g3136.t1 ATGCCTCCTAAGAAGAACACGTCCAAGCCCGTCGAGGCTTCAACCGAGACGGTAAAGAGAAGTACTCGACTACGC ACCAGCGCCAGGCAGATCACTATGACAAAGGCCGAAACCCCCGTGAAAGAGTCTACAAAGGCAGCTGCAAAATCC ACCACTAAGTCCATTGAAAAACCTACCGCAAAGCCGACTGCAAAGGCTACTGCAAAGTCCACTACAAAGTCCACT ACGAAGCCGACTGCAACATCTACCAAGTCAACTGCGAAGCCAAGCAAAATGGCAACATCTACCAAATTGACCTCT GCTACGAAGAAGCGCAAAGCTGATGAAGATGAGGAGAAACCTCGCGAAATCAAAAGATCTCGTGTCGCGCAACCC CGTCAGCCAAAGCCGAAAGTCAAAGTTATCATCAACGAGGCCCCGAAAACTAAACTGAATGTATTCGTCTGTGGT GAGGGTAGCTCTGGTGAGCTGGGGTTGGGCACAGCTAAGAATGTTATCGATGTGAAGCGCCCACGTTTGAATAAG CTTCTGTCTGCCGAAGAAGTCGGAGTTGTACAGGTTGCTGTCGGTGGCATGCACTGTCTAGCTCTAACGCATGAC AACAAGATATTCTCCTGGGGTGTGAACGATCAGGGTGCGCTCGGAAGAGAAACTGAATGGGACGGTGGATACAAG GACATTGAGAACGACAGCGATTCCGATTCCGATGATGAAGACAGTGGATTAAACCCCCGGGAGTCTATTCCCACT GCTATTCCCGTCACCGCTTTCCCCGAAGGCACTGTCTTCGTTGAAGTCGCCGCCGCCGATAGCGCAAGCTTTGCC TTGACCGATGATGGTCTAGTCTATGGCTGGGGCACCTTCCGAGTAAGACGAACTGACTGTTTTGAATTACTTTGC TTTTACTGACAACGATTCTAGAGCAACGATGGAATCCTCGGATTTGACGCGTCTTCTCACGTTCAAACGATCCCA ACTTTGATCTCGTCTTTGAAGAAGATCAAACACCTGACTTGCGGAGCTAATCACGTTCTTGCCCTGAACGACCAA GGTCGCGTCTACTCGTGGGGCTCAGGACAACAGAATCAGCTCGGTCGCAGGATCGTGGAGCGCAACAGGCTGAAT GGTCTTCAGCCCCGAGAGTTCGGTCTCCCTAAGAACATCGTCCACATCGGGAGTGGCTCGTACCACTCGTTTGCT GTTCACGCCACTGGCAAGGTCTATGCCTGGGGATTGAATAGCTTCGGTGCAACCGCCCTCCGCGAGGGCGCTGGC GACGATGAAGCTGCTATCGTGCATCCCACTCTTGTCGAATCACTTTCTGACAAAAATATTTCACAAATCTGCGGC GGCGCTCATCATTCGATTGCCATTGCTGGCGATGGTGAATGCTTGGTTTGGGGCCGTCTTGACGGTTTCCAAAGC GGCCTTAAGATCGATGCACTTTCCGATGACGCCGTTATCAAGGATGAGCGCGATCGCCCCCGTATCCTGATCGCG CCTACCCCTGTTCCGGGTATCAAGGCCAAGGTTGTGGCGGCTGCCTCGGATCATTCTCTCGCTATCGATTCCGAT GGCCGTGCATGGTCATGGGGTTTCTCTGCTACCTATCAAACGGGACAAGGTACACAGGATGACATCGAGGTGGCT ACTGTTATCGATAACACTGCTACTCGTGGAAAGAAATTGAACTGGGCGGGTGCCGGTGGTCAGTTCTCTGTGTTC ACGGAGCCTGCCAGCGCGTGA |