Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3131.t1
Gene name
Locationscaffold_04:785632..786656
Strand+
Gene length (bp)1024
Transcript length (bp)867
Coding sequence length (bp)867
Protein length (aa) 289

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-13 98 164

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 65.47 37.17 93.78
5d_25C Five days - 25 degrees Celsius 66.87 38.00 95.74
7d_25C Seven days - 25 degrees Celsius 62.66 35.14 90.18
10d_25C Ten days - 25 degrees Celsius 66.59 37.72 95.47
7d_15C Seven days - 15 degrees Celsius 65.30 36.67 93.93
7d_30C Seven days - 30 degrees Celsius 62.20 34.78 89.62

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.954268 no
3d_25C 7d_25C 0.903130 no
3d_25C 7d_15C 0.994451 no
3d_25C 7d_30C 0.884812 no
3d_25C 10d_25C 0.964582 no
5d_25C 7d_25C 0.851671 no
5d_25C 7d_15C 0.950207 no
5d_25C 7d_30C 0.831686 no
5d_25C 10d_25C 0.991713 no
7d_25C 7d_15C 0.911607 no
7d_25C 7d_30C 0.986282 no
7d_25C 10d_25C 0.865063 no
7d_15C 7d_30C 0.894178 no
7d_15C 10d_25C 0.959823 no
7d_30C 10d_25C 0.845160 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3131.t1
MSSRSARGQSPLRSPEQDQARSRSLHRSKPRSESPSRSLTRSPSQGRHDRYRSRTRSRSPSRGRTRSRSPSRAGR
RHNSRSESRSITPNASPPRSSKIVVEKLTKNVTENHIREIFGGFGEIEYLDLPINKAFMTNRGTAYIIYYDPADA
EAAIAHMHEAQLDGAILNVSIVLPRRKFSRSPPPASNRVNGGRPRYGRVPYAGPSSPRRHGGGRPTDRHDIYRPK
TASRSRSPVRSRSYSSRSRSPALRRGSPRTESRHHRRRSPSYSSYGYSSRSRSPNRNRGHNRK*
Coding >Pro_DTO377G3_2|g3131.t1
ATGTCCTCGAGATCAGCTCGTGGACAATCACCTCTCCGTTCACCAGAACAGGACCAAGCACGGTCCCGTTCTTTA
CATCGTTCTAAACCTCGAAGTGAGAGCCCATCCCGAAGCCTCACACGAAGTCCATCACAAGGACGTCACGATCGC
TATCGTTCAAGAACCCGATCCCGATCCCCGTCTCGTGGCAGAACCCGATCTCGCAGTCCCAGCCGAGCTGGTCGC
CGTCACAATAGCCGGAGCGAAAGCCGCTCAATTACACCCAACGCTAGCCCTCCGAGAAGTTCTAAGATCGTGGTA
GAAAAATTGACAAAGAATGTCACAGAAAATCACATTCGAGAGATATTCGGGGGTTTTGGAGAGATAGAGTACCTC
GATCTTCCAATCAACAAAGCTTTCATGACAAATAGGGGAACTGCGTATATCATTTATTACGACCCCGCTGATGCG
GAGGCAGCCATTGCCCACATGCACGAGGCTCAGCTTGACGGGGCCATCCTAAATGTCTCAATCGTTCTTCCTCGC
CGTAAATTCTCACGCTCGCCACCCCCTGCGTCGAATCGAGTGAATGGCGGCCGCCCCAGATACGGCAGAGTCCCA
TATGCAGGCCCATCATCACCCAGACGGCACGGAGGCGGTCGACCTACAGACCGCCATGACATTTATAGGCCCAAG
ACTGCATCAAGATCACGATCTCCTGTTCGTTCTCGGTCATACTCCTCTAGATCTCGCTCACCGGCGCTGCGCAGA
GGTAGTCCCCGTACAGAATCGCGACATCACCGGCGCCGGAGCCCAAGCTACAGCAGCTATGGTTACAGCAGTCGA
AGTCGCAGTCCAAACCGGAACCGAGGGCACAATCGAAAGTAA
Transcript >Pro_DTO377G3_2|g3131.t1
ATGTCCTCGAGATCAGCTCGTGGACAATCACCTCTCCGTTCACCAGAACAGGACCAAGCACGGTCCCGTTCTTTA
CATCGTTCTAAACCTCGAAGTGAGAGCCCATCCCGAAGCCTCACACGAAGTCCATCACAAGGACGTCACGATCGC
TATCGTTCAAGAACCCGATCCCGATCCCCGTCTCGTGGCAGAACCCGATCTCGCAGTCCCAGCCGAGCTGGTCGC
CGTCACAATAGCCGGAGCGAAAGCCGCTCAATTACACCCAACGCTAGCCCTCCGAGAAGTTCTAAGATCGTGGTA
GAAAAATTGACAAAGAATGTCACAGAAAATCACATTCGAGAGATATTCGGGGGTTTTGGAGAGATAGAGTACCTC
GATCTTCCAATCAACAAAGCTTTCATGACAAATAGGGGAACTGCGTATATCATTTATTACGACCCCGCTGATGCG
GAGGCAGCCATTGCCCACATGCACGAGGCTCAGCTTGACGGGGCCATCCTAAATGTCTCAATCGTTCTTCCTCGC
CGTAAATTCTCACGCTCGCCACCCCCTGCGTCGAATCGAGTGAATGGCGGCCGCCCCAGATACGGCAGAGTCCCA
TATGCAGGCCCATCATCACCCAGACGGCACGGAGGCGGTCGACCTACAGACCGCCATGACATTTATAGGCCCAAG
ACTGCATCAAGATCACGATCTCCTGTTCGTTCTCGGTCATACTCCTCTAGATCTCGCTCACCGGCGCTGCGCAGA
GGTAGTCCCCGTACAGAATCGCGACATCACCGGCGCCGGAGCCCAAGCTACAGCAGCTATGGTTACAGCAGTCGA
AGTCGCAGTCCAAACCGGAACCGAGGGCACAATCGAAAGTAA
Gene >Pro_DTO377G3_2|g3131.t1
ATGTCCTCGAGATCAGCTCGTGGACAATCACCTCTCCGTTCACCAGAACAGGACCAAGCACGGTCCCGTTCTTTA
CATCGTTCTAAACCTCGAAGTGAGAGCCCATCCCGAAGCCTCACACGAAGTCCATCACAAGGACGTCACGATCGC
TATCGTTCAAGAACCCGATCCCGATCCCCGTCTCGTGGCAGAACCCGATCTCGCAGTCCCAGCCGAGCTGGTCGC
CGTCACAATAGCCGGAGCGAAAGCCGCTCAATTACACCCAACGCTAGCCCTCCGAGAAGTTCTAAGGTAAGTGCC
AGTCTGTTCCTGCTGTGATATAGCTGTCTCCCCCCCATGGCGGAACCATATCTATGAAACTAAAAGCTGATTTCC
CTTTTTCTTAACAGATCGTGGTAGAAAAATTGACAAAGAATGTCACAGAAAATCACATTCGAGAGATATTCGGGG
GTTTTGGAGAGATAGAGTACCTCGATCTTCCAATCAACAAAGCTTGTAAGACTCGCTTTTTGACTCGCGATTCCA
GATTCATATGTCTCCTAACACTCTTACAGTCATGACAAATAGGGGAACTGCGTATATCATTTATTACGACCCCGC
TGATGCGGAGGCAGCCATTGCCCACATGCACGAGGCTCAGCTTGACGGGGCCATCCTAAATGTCTCAATCGTTCT
TCCTCGCCGTAAATTCTCACGCTCGCCACCCCCTGCGTCGAATCGAGTGAATGGCGGCCGCCCCAGATACGGCAG
AGTCCCATATGCAGGCCCATCATCACCCAGACGGCACGGAGGCGGTCGACCTACAGACCGCCATGACATTTATAG
GCCCAAGACTGCATCAAGATCACGATCTCCTGTTCGTTCTCGGTCATACTCCTCTAGATCTCGCTCACCGGCGCT
GCGCAGAGGTAGTCCCCGTACAGAATCGCGACATCACCGGCGCCGGAGCCCAAGCTACAGCAGCTATGGTTACAG
CAGTCGAAGTCGCAGTCCAAACCGGAACCGAGGGCACAATCGAAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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