Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3121.t1
Gene name
Locationscaffold_04:744764..745223
Strand-
Gene length (bp)459
Transcript length (bp)408
Coding sequence length (bp)408
Protein length (aa) 136

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06108 DUF952 Protein of unknown function (DUF952) 1.4E-21 30 113

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 91.20 42.42 139.97
5d_25C Five days - 25 degrees Celsius 132.63 67.92 197.35
7d_25C Seven days - 25 degrees Celsius 131.54 67.31 195.78
10d_25C Ten days - 25 degrees Celsius 169.90 91.62 248.18
7d_15C Seven days - 15 degrees Celsius 123.02 61.37 184.68
7d_30C Seven days - 30 degrees Celsius 132.85 68.25 197.45

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.213381 no
3d_25C 7d_25C 0.226265 no
3d_25C 7d_15C 0.359461 no
3d_25C 7d_30C 0.217728 no
3d_25C 10d_25C 0.025128 yes
5d_25C 7d_25C 0.984821 no
5d_25C 7d_15C 0.849665 no
5d_25C 7d_30C 0.996826 no
5d_25C 10d_25C 0.408659 no
7d_25C 7d_15C 0.870572 no
7d_25C 7d_30C 0.982373 no
7d_25C 10d_25C 0.387910 no
7d_15C 7d_30C 0.849490 no
7d_15C 10d_25C 0.262956 no
7d_30C 10d_25C 0.415137 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3121.t1
MASLISQPRYIYKIVPSTAPVREPIPERLTVSELDEADGFIHLSTAHQVGNTLKAFFTEEPLVYLLRIEYHRVVQ
DIRWESPDGKVSAPRPGEGLFPHLYNGLKLGRGEIESVAIWQNDEGWDKALTAGKPWLLY*
Coding >Pro_DTO377G3_2|g3121.t1
ATGGCTTCGTTGATTTCTCAACCTCGCTACATCTACAAGATTGTGCCTTCCACCGCACCAGTTCGCGAACCAATC
CCTGAGCGGCTCACGGTTAGCGAACTGGACGAGGCCGATGGTTTCATCCACCTCTCAACGGCGCATCAGGTGGGA
AACACATTGAAAGCATTTTTCACAGAGGAACCACTTGTCTATTTATTGCGGATCGAGTATCATCGCGTGGTCCAA
GATATCCGCTGGGAGTCCCCAGACGGGAAAGTGTCTGCCCCTCGACCCGGTGAAGGACTTTTCCCACATCTCTAC
AATGGACTAAAACTGGGCAGAGGGGAGATCGAGAGCGTCGCTATCTGGCAGAATGATGAGGGATGGGACAAGGCT
CTCACTGCAGGGAAGCCGTGGCTCCTGTACTGA
Transcript >Pro_DTO377G3_2|g3121.t1
ATGGCTTCGTTGATTTCTCAACCTCGCTACATCTACAAGATTGTGCCTTCCACCGCACCAGTTCGCGAACCAATC
CCTGAGCGGCTCACGGTTAGCGAACTGGACGAGGCCGATGGTTTCATCCACCTCTCAACGGCGCATCAGGTGGGA
AACACATTGAAAGCATTTTTCACAGAGGAACCACTTGTCTATTTATTGCGGATCGAGTATCATCGCGTGGTCCAA
GATATCCGCTGGGAGTCCCCAGACGGGAAAGTGTCTGCCCCTCGACCCGGTGAAGGACTTTTCCCACATCTCTAC
AATGGACTAAAACTGGGCAGAGGGGAGATCGAGAGCGTCGCTATCTGGCAGAATGATGAGGGATGGGACAAGGCT
CTCACTGCAGGGAAGCCGTGGCTCCTGTACTGA
Gene >Pro_DTO377G3_2|g3121.t1
ATGGCTTCGTTGATTTCTCAACCTCGCTACATCTACAAGATTGTGCCTTCCACCGCACCAGTTCGCGAACCAATC
CCTGAGCGGCTCACGGTTAGCGAACTGGACGAGGCCGATGGTTTCATCCACCTCTCAACGGCGCATCAGGTGGGA
AACACATTGAAAGCATTTTTCACAGAGGAACCACTTGTCTATTTATTGCGGATCGAGTATCATCGCGTGGTCCAA
GATATCCGCTGGGAGTCCCCAGACGGGAAAGTGTCTGCCCCTCGACCCGGTGAAGGACTTTTCCCAGTAAGCTGC
ATATGTCGGTCTGAAATTAACATTCGCTGAAATAAAGCCTAGCATCTCTACAATGGACTAAAACTGGGCAGAGGG
GAGATCGAGAGCGTCGCTATCTGGCAGAATGATGAGGGATGGGACAAGGCTCTCACTGCAGGGAAGCCGTGGCTC
CTGTACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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