© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3119.t1 |
| Gene name | |
| Location | scaffold_04:740801..742697 |
| Strand | - |
| Gene length (bp) | 1896 |
| Transcript length (bp) | 1641 |
| Coding sequence length (bp) | 1641 |
| Protein length (aa) | 547 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00478 | IMPDH | IMP dehydrogenase / GMP reductase domain | 4.9E-128 | 50 | 535 |
| PF00571 | CBS | CBS domain | 3.2E-05 | 138 | 184 |
| PF00571 | CBS | CBS domain | 1.3E-08 | 194 | 249 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 185.58 | 111.19 | 259.96 |
| 5d_25C | Five days - 25 degrees Celsius | 121.81 | 74.51 | 169.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 111.02 | 67.65 | 154.39 |
| 10d_25C | Ten days - 25 degrees Celsius | 91.14 | 55.90 | 126.37 |
| 7d_15C | Seven days - 15 degrees Celsius | 174.17 | 104.28 | 244.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 118.78 | 72.59 | 164.98 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.046757 | yes |
| 3d_25C | 7d_25C | 0.012609 | yes |
| 3d_25C | 7d_15C | 0.841577 | no |
| 3d_25C | 7d_30C | 0.034793 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.752508 | no |
| 5d_25C | 7d_15C | 0.100309 | no |
| 5d_25C | 7d_30C | 0.941919 | no |
| 5d_25C | 10d_25C | 0.200770 | no |
| 7d_25C | 7d_15C | 0.030001 | yes |
| 7d_25C | 7d_30C | 0.828788 | no |
| 7d_25C | 10d_25C | 0.423883 | no |
| 7d_15C | 7d_30C | 0.074740 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.250020 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3119.t1 MPITAGDAAPGAAMKAEIADYTKAVEVLDTYTTLDGLDADTLLDSDKHGALTYNDFLILPGYIGFPASDVSLDTP VTKRISLKAPLLSSPMDTVTEHNMAIHMALLGGLGVIHHNCSPEDQAEMVRKVKRYENGFILDPVVISPKATVGE VKELKAKWGFGGFPVTENGTLKSKLVGMVTSRDIQFHTGLDEPVTAVMATDLVTAPAGTTLAEANEVLRRSKKGK LPIIDPNGNIVALLSRSDLMKNLHYPLASKLPDSKQLIAAAAIGTREEDKKRLQLLVEAGLDIVILDSSQGNSMY QIEMIKYIKKTIPEVDVIGGNVVTREQAAALIAAGVDGLRIGMGSGSACITQEVMAVGRPQAASVRSVATFAARF GVPCIADGGIQNVGHIVKGLAMGASTIMMGGLLAGTTESPGEYFVSNEGQLVKAYRGMGSIAAMEDKKAGGDGKD SKASNAGTARYFSEKDRVLVAQGVAGSVLDRGSVTKFIPYLIAGVQHSLQDIGVKSLTDMHDGVNKGTVRFEMRS ASAMTEGNVHGLHSYDKKLYS* |
| Coding | >Pro_DTO377G3_2|g3119.t1 ATGCCTATCACCGCCGGCGACGCTGCACCTGGTGCTGCCATGAAGGCTGAGATCGCCGACTACACCAAGGCCGTT GAGGTCTTGGATACCTACACCACCCTCGATGGTCTTGATGCCGATACCCTGCTTGACTCTGACAAGCACGGCGCA TTGACCTACAATGATTTCCTGATTCTGCCTGGTTACATCGGCTTCCCCGCTTCCGATGTCTCATTGGATACCCCT GTTACCAAGCGTATCTCCCTGAAGGCTCCCCTTCTGTCCTCACCCATGGACACTGTCACCGAGCACAACATGGCT ATTCACATGGCCCTGCTCGGTGGTCTGGGTGTTATCCACCACAACTGCTCCCCCGAGGATCAGGCAGAGATGGTC CGTAAGGTTAAGAGATACGAGAATGGTTTCATTCTGGACCCCGTTGTCATCTCTCCCAAGGCCACCGTCGGTGAG GTCAAGGAGCTGAAGGCCAAGTGGGGCTTCGGTGGCTTCCCTGTCACTGAGAACGGAACCCTCAAGTCCAAGCTC GTTGGAATGGTTACCTCGCGTGACATCCAGTTCCACACTGGTCTCGACGAGCCCGTGACTGCCGTTATGGCCACG GATCTTGTTACTGCCCCGGCCGGCACCACCCTAGCCGAAGCCAACGAAGTCCTTCGTCGGTCCAAGAAGGGAAAG CTTCCTATTATCGATCCTAACGGCAACATCGTCGCCCTGCTTTCCCGCTCTGATCTGATGAAGAACCTCCACTAC CCCCTTGCCTCCAAGCTCCCCGACTCTAAGCAGCTGATCGCTGCCGCTGCTATTGGTACTCGCGAGGAGGACAAG AAGCGCCTCCAGCTTCTTGTGGAAGCTGGGTTGGACATTGTTATCCTGGACTCTAGCCAGGGTAACTCTATGTAC CAGATCGAGATGATCAAGTACATTAAGAAGACTATCCCCGAGGTCGACGTTATCGGCGGTAACGTTGTCACTCGT GAACAGGCTGCTGCTTTGATTGCCGCCGGTGTCGATGGCCTGAGAATTGGCATGGGCAGCGGTAGTGCCTGTATC ACCCAGGAGGTTATGGCTGTTGGTCGTCCCCAGGCTGCTTCCGTGCGTAGCGTTGCAACATTTGCCGCTCGCTTC GGTGTTCCCTGTATCGCCGATGGTGGTATCCAGAACGTCGGCCACATCGTCAAGGGTCTCGCTATGGGTGCTAGC ACCATCATGATGGGTGGTCTTCTTGCTGGTACCACCGAGTCTCCCGGTGAGTACTTCGTCAGCAACGAGGGCCAG CTCGTCAAGGCCTACCGTGGCATGGGCAGTATTGCCGCCATGGAGGACAAGAAGGCCGGTGGTGATGGAAAGGAC AGCAAGGCCAGCAACGCTGGTACTGCTCGCTATTTCTCCGAGAAGGACCGCGTCCTTGTTGCCCAGGGTGTCGCT GGCTCCGTCCTTGACCGCGGATCCGTCACCAAGTTTATTCCTTACCTCATCGCCGGTGTCCAGCACTCCCTGCAG GATATTGGTGTCAAGAGCCTGACCGATATGCACGACGGTGTCAACAAGGGCACTGTGCGTTTCGAGATGCGAAGT GCTAGCGCTATGACCGAGGGTAACGTCCACGGTCTCCACAGCTACGACAAGAAGCTTTACTCGTAA |
| Transcript | >Pro_DTO377G3_2|g3119.t1 ATGCCTATCACCGCCGGCGACGCTGCACCTGGTGCTGCCATGAAGGCTGAGATCGCCGACTACACCAAGGCCGTT GAGGTCTTGGATACCTACACCACCCTCGATGGTCTTGATGCCGATACCCTGCTTGACTCTGACAAGCACGGCGCA TTGACCTACAATGATTTCCTGATTCTGCCTGGTTACATCGGCTTCCCCGCTTCCGATGTCTCATTGGATACCCCT GTTACCAAGCGTATCTCCCTGAAGGCTCCCCTTCTGTCCTCACCCATGGACACTGTCACCGAGCACAACATGGCT ATTCACATGGCCCTGCTCGGTGGTCTGGGTGTTATCCACCACAACTGCTCCCCCGAGGATCAGGCAGAGATGGTC CGTAAGGTTAAGAGATACGAGAATGGTTTCATTCTGGACCCCGTTGTCATCTCTCCCAAGGCCACCGTCGGTGAG GTCAAGGAGCTGAAGGCCAAGTGGGGCTTCGGTGGCTTCCCTGTCACTGAGAACGGAACCCTCAAGTCCAAGCTC GTTGGAATGGTTACCTCGCGTGACATCCAGTTCCACACTGGTCTCGACGAGCCCGTGACTGCCGTTATGGCCACG GATCTTGTTACTGCCCCGGCCGGCACCACCCTAGCCGAAGCCAACGAAGTCCTTCGTCGGTCCAAGAAGGGAAAG CTTCCTATTATCGATCCTAACGGCAACATCGTCGCCCTGCTTTCCCGCTCTGATCTGATGAAGAACCTCCACTAC CCCCTTGCCTCCAAGCTCCCCGACTCTAAGCAGCTGATCGCTGCCGCTGCTATTGGTACTCGCGAGGAGGACAAG AAGCGCCTCCAGCTTCTTGTGGAAGCTGGGTTGGACATTGTTATCCTGGACTCTAGCCAGGGTAACTCTATGTAC CAGATCGAGATGATCAAGTACATTAAGAAGACTATCCCCGAGGTCGACGTTATCGGCGGTAACGTTGTCACTCGT GAACAGGCTGCTGCTTTGATTGCCGCCGGTGTCGATGGCCTGAGAATTGGCATGGGCAGCGGTAGTGCCTGTATC ACCCAGGAGGTTATGGCTGTTGGTCGTCCCCAGGCTGCTTCCGTGCGTAGCGTTGCAACATTTGCCGCTCGCTTC GGTGTTCCCTGTATCGCCGATGGTGGTATCCAGAACGTCGGCCACATCGTCAAGGGTCTCGCTATGGGTGCTAGC ACCATCATGATGGGTGGTCTTCTTGCTGGTACCACCGAGTCTCCCGGTGAGTACTTCGTCAGCAACGAGGGCCAG CTCGTCAAGGCCTACCGTGGCATGGGCAGTATTGCCGCCATGGAGGACAAGAAGGCCGGTGGTGATGGAAAGGAC AGCAAGGCCAGCAACGCTGGTACTGCTCGCTATTTCTCCGAGAAGGACCGCGTCCTTGTTGCCCAGGGTGTCGCT GGCTCCGTCCTTGACCGCGGATCCGTCACCAAGTTTATTCCTTACCTCATCGCCGGTGTCCAGCACTCCCTGCAG GATATTGGTGTCAAGAGCCTGACCGATATGCACGACGGTGTCAACAAGGGCACTGTGCGTTTCGAGATGCGAAGT GCTAGCGCTATGACCGAGGGTAACGTCCACGGTCTCCACAGCTACGACAAGAAGCTTTACTCGTAA |
| Gene | >Pro_DTO377G3_2|g3119.t1 ATGCCTATCACCGCCGGCGACGCTGCACCTGGTGCTGCCATGAAGGCTGAGATCGCCGACTACACCAAGGCCGTT GAGGTCTTGGATACCTACACCACCCTCGATGGTCTTGATGCCGATACCCTGCTTGACTCTGACAAGCACGGCGCA TTGACCTACAATGATTTCCTGATTCTGCCTGGTTACATCGGTAAGCTGGACCCCGCAGTCAAGATAGAAAATTCT TTTTTTTTCTAACCCATATAGGCTTCCCCGCTTCCGATGTCTCATTGGATACCCCTGTTACCAAGCGTATCTCCC TGAAGGCTCCCCTTCTGTCCTCACCCATGGACACTGTCACCGAGCACAACATGGCTATTCACATGGCCCTGCTCG GTGGTCTGGGTGTTATCCACCACAACTGCTCCCCCGAGGATCAGGCAGAGATGGTCCGTAAGGTTAAGAGATACG AGAATGGTTTCATTCTGGACCCCGTTGTCATCTCTCCCAAGGCCACCGTCGGTGAGGTCAAGGAGCTGAAGGCCA AGTGGGGCTTCGGTGGCTTCCCTGTCACTGGTAAGATATCCACATCTACTTCTCCCATCACCTGCCCATCCACTT TGCATGATGACCATCCTCTTTTAATTATAACTTTCGTTCCACTGCAGCAACGAAAGTTGCACTGTAGAGAACCAG ATTTTATCTGAGCAATTTGTCTTTTTGGATATTACCCTCACATGATCTTTCGACAGCAGATGCTAATGTTTGAAC ATAGAGAACGGAACCCTCAAGTCCAAGCTCGTTGGAATGGTTACCTCGCGTGACATCCAGTTCCACACTGGTCTC GACGAGCCCGTGACTGCCGTTATGGCCACGGATCTTGTTACTGCCCCGGCCGGCACCACCCTAGCCGAAGCCAAC GAAGTCCTTCGTCGGTCCAAGAAGGGAAAGCTTCCTATTATCGATCCTAACGGCAACATCGTCGCCCTGCTTTCC CGCTCTGATCTGATGAAGAACCTCCACTACCCCCTTGCCTCCAAGCTCCCCGACTCTAAGCAGCTGATCGCTGCC GCTGCTATTGGTACTCGCGAGGAGGACAAGAAGCGCCTCCAGCTTCTTGTGGAAGCTGGGTTGGACATTGTTATC CTGGACTCTAGCCAGGGTAACTCTATGTACCAGATCGAGATGATCAAGTACATTAAGAAGACTATCCCCGAGGTC GACGTTATCGGCGGTAACGTTGTCACTCGTGAACAGGCTGCTGCTTTGATTGCCGCCGGTGTCGATGGCCTGAGA ATTGGCATGGGCAGCGGTAGTGCCTGTATCACCCAGGAGGTTATGGCTGTTGGTCGTCCCCAGGCTGCTTCCGTG CGTAGCGTTGCAACATTTGCCGCTCGCTTCGGTGTTCCCTGTATCGCCGATGGTGGTATCCAGAACGTCGGCCAC ATCGTCAAGGGTCTCGCTATGGGTGCTAGCACCATCATGATGGGTGGTCTTCTTGCTGGTACCACCGAGTCTCCC GGTGAGTACTTCGTCAGCAACGAGGGCCAGCTCGTCAAGGCCTACCGTGGCATGGGCAGTATTGCCGCCATGGAG GACAAGAAGGCCGGTGGTGATGGAAAGGACAGCAAGGCCAGCAACGCTGGTACTGCTCGCTATTTCTCCGAGAAG GACCGCGTCCTTGTTGCCCAGGGTGTCGCTGGCTCCGTCCTTGACCGCGGATCCGTCACCAAGTTTATTCCTTAC CTCATCGCCGGTGTCCAGCACTCCCTGCAGGATATTGGTGTCAAGAGCCTGACCGATATGCACGACGGTGTCAAC AAGGGCACTGTGCGTTTCGAGATGCGAAGTGCTAGCGCTATGACCGAGGGTAACGTCCACGGTCTCCACAGCTAC GACAAGAAGCTTTACTCGTAA |