© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3118.t1 |
| Gene name | |
| Location | scaffold_04:739095..740262 |
| Strand | - |
| Gene length (bp) | 1167 |
| Transcript length (bp) | 1014 |
| Coding sequence length (bp) | 1014 |
| Protein length (aa) | 338 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 9.2E-07 | 14 | 151 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 93.32 | 55.93 | 130.72 |
| 5d_25C | Five days - 25 degrees Celsius | 137.20 | 83.49 | 190.91 |
| 7d_25C | Seven days - 25 degrees Celsius | 143.43 | 86.90 | 199.96 |
| 10d_25C | Ten days - 25 degrees Celsius | 150.34 | 91.68 | 209.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 120.55 | 71.54 | 169.56 |
| 7d_30C | Seven days - 30 degrees Celsius | 128.85 | 77.42 | 180.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.072817 | no |
| 3d_25C | 7d_25C | 0.041989 | yes |
| 3d_25C | 7d_15C | 0.293174 | no |
| 3d_25C | 7d_30C | 0.153271 | no |
| 3d_25C | 10d_25C | 0.018838 | yes |
| 5d_25C | 7d_25C | 0.892539 | no |
| 5d_25C | 7d_15C | 0.643655 | no |
| 5d_25C | 7d_30C | 0.843091 | no |
| 5d_25C | 10d_25C | 0.753825 | no |
| 7d_25C | 7d_15C | 0.509929 | no |
| 7d_25C | 7d_30C | 0.714949 | no |
| 7d_25C | 10d_25C | 0.885908 | no |
| 7d_15C | 7d_30C | 0.835860 | no |
| 7d_15C | 10d_25C | 0.378191 | no |
| 7d_30C | 10d_25C | 0.566882 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3118.t1 MSSPKRDSEPAVSRPSSSVLLISSKNEVLLLHRVKTSTSFASAHVFPGGNLSNQDGECPPPGDLARHEDSPSYRR AAIRELFEESGILLAKDRSSGKMLAVDEPTREAGRRLIHQNKTTFDEWLKQQSADAEPDIGQLIPFTRWVTPTNI PKRYTTQMYLYFLPLPVNVDKKILDQLPAEGEHEEHQIPTSDGGIEVTEAQFLPASEWVSRAQKAEIILFPPQFL LLHLVSGFLDREPRADASVEEMEKRRQALVEFVHSGSPPWTEKCISPKSILMTSDGRSVLGLNEPGHELKGSSKR GESERVVLVRFKKGSAREVAVGWKKDVLKKEREKSNL* |
| Coding | >Pro_DTO377G3_2|g3118.t1 ATGTCGAGCCCGAAACGTGATAGTGAACCCGCAGTGTCCCGGCCTAGTTCTAGCGTTCTTCTTATATCTTCAAAG AACGAGGTCCTTCTTCTTCATCGCGTGAAGACCTCTACCTCTTTTGCATCTGCACATGTCTTTCCTGGTGGCAAC TTGTCTAATCAAGATGGGGAATGCCCACCACCCGGAGATCTAGCACGGCATGAAGATTCCCCAAGTTACCGACGT GCAGCGATCAGGGAACTCTTTGAAGAGAGTGGAATTCTTCTAGCTAAAGACCGCAGCTCCGGGAAGATGCTTGCC GTCGACGAACCTACCCGAGAGGCCGGCAGACGACTCATTCATCAGAACAAGACCACTTTTGATGAATGGTTGAAG CAGCAAAGCGCTGATGCTGAGCCCGATATAGGCCAATTAATCCCTTTTACTCGCTGGGTTACGCCAACCAACATT CCTAAGCGATACACTACTCAGATGTATCTATATTTCTTACCTTTACCCGTCAACGTGGATAAGAAAATCCTCGAC CAACTCCCAGCAGAAGGCGAACACGAGGAGCATCAAATCCCAACGAGTGATGGTGGAATCGAGGTTACGGAGGCA CAGTTTCTTCCCGCCTCGGAATGGGTTAGTCGTGCTCAAAAGGCTGAAATTATTCTATTCCCGCCGCAGTTCCTT CTTTTACATTTGGTGTCAGGATTCCTGGACAGAGAGCCTCGTGCAGATGCTTCCGTGGAAGAAATGGAGAAGCGT CGTCAAGCGCTTGTCGAGTTCGTTCATTCTGGCTCTCCTCCATGGACAGAGAAGTGCATATCCCCAAAATCTATT CTCATGACCAGTGATGGGCGATCTGTGTTGGGTCTGAATGAACCCGGGCATGAGCTGAAAGGGTCTTCTAAGCGA GGAGAGTCCGAGAGAGTGGTTCTTGTGCGGTTCAAAAAAGGAAGTGCACGAGAGGTGGCTGTTGGATGGAAAAAG GACGTGTTGAAAAAAGAGAGGGAAAAGAGTAACCTGTAA |
| Transcript | >Pro_DTO377G3_2|g3118.t1 ATGTCGAGCCCGAAACGTGATAGTGAACCCGCAGTGTCCCGGCCTAGTTCTAGCGTTCTTCTTATATCTTCAAAG AACGAGGTCCTTCTTCTTCATCGCGTGAAGACCTCTACCTCTTTTGCATCTGCACATGTCTTTCCTGGTGGCAAC TTGTCTAATCAAGATGGGGAATGCCCACCACCCGGAGATCTAGCACGGCATGAAGATTCCCCAAGTTACCGACGT GCAGCGATCAGGGAACTCTTTGAAGAGAGTGGAATTCTTCTAGCTAAAGACCGCAGCTCCGGGAAGATGCTTGCC GTCGACGAACCTACCCGAGAGGCCGGCAGACGACTCATTCATCAGAACAAGACCACTTTTGATGAATGGTTGAAG CAGCAAAGCGCTGATGCTGAGCCCGATATAGGCCAATTAATCCCTTTTACTCGCTGGGTTACGCCAACCAACATT CCTAAGCGATACACTACTCAGATGTATCTATATTTCTTACCTTTACCCGTCAACGTGGATAAGAAAATCCTCGAC CAACTCCCAGCAGAAGGCGAACACGAGGAGCATCAAATCCCAACGAGTGATGGTGGAATCGAGGTTACGGAGGCA CAGTTTCTTCCCGCCTCGGAATGGGTTAGTCGTGCTCAAAAGGCTGAAATTATTCTATTCCCGCCGCAGTTCCTT CTTTTACATTTGGTGTCAGGATTCCTGGACAGAGAGCCTCGTGCAGATGCTTCCGTGGAAGAAATGGAGAAGCGT CGTCAAGCGCTTGTCGAGTTCGTTCATTCTGGCTCTCCTCCATGGACAGAGAAGTGCATATCCCCAAAATCTATT CTCATGACCAGTGATGGGCGATCTGTGTTGGGTCTGAATGAACCCGGGCATGAGCTGAAAGGGTCTTCTAAGCGA GGAGAGTCCGAGAGAGTGGTTCTTGTGCGGTTCAAAAAAGGAAGTGCACGAGAGGTGGCTGTTGGATGGAAAAAG GACGTGTTGAAAAAAGAGAGGGAAAAGAGTAACCTGTAA |
| Gene | >Pro_DTO377G3_2|g3118.t1 ATGTCGAGCCCGAAACGTGATAGTGAACCCGCAGTGTCCCGGCCTAGTTCTAGGTAAGCGCAAGGGACCACATGA CACATTGACTAGGGAGATATTCACGGCGCGATGTCAGGCATTCCCCCAAAAAAGAATTGGGTACTAACTATTATA TAGCGTTCTTCTTATATCTTCAAAGAACGAGGTCCTTCTTCTTCATCGCGTGAAGACCTCTACCTCTTTTGCATC TGCACATGTCTTTCCTGGTGGCAACTTGTCTAATCAAGATGGGGAATGCCCACCACCCGGAGATCTAGCACGGCA TGAAGATTCCCCAAGTTACCGACGTGCAGCGATCAGGGAACTCTTTGAAGAGAGTGGAATTCTTCTAGCTAAAGA CCGCAGCTCCGGGAAGATGCTTGCCGTCGACGAACCTACCCGAGAGGCCGGCAGACGACTCATTCATCAGAACAA GACCACTTTTGATGAATGGTTGAAGCAGCAAAGCGCTGATGCTGAGCCCGATATAGGTAAGTGCCCATTCTGCGC ATTGACACCCGAGGGCAGCACGCTGACTCTACAGGCCAATTAATCCCTTTTACTCGCTGGGTTACGCCAACCAAC ATTCCTAAGCGATACACTACTCAGATGTATCTATATTTCTTACCTTTACCCGTCAACGTGGATAAGAAAATCCTC GACCAACTCCCAGCAGAAGGCGAACACGAGGAGCATCAAATCCCAACGAGTGATGGTGGAATCGAGGTTACGGAG GCACAGTTTCTTCCCGCCTCGGAATGGGTTAGTCGTGCTCAAAAGGCTGAAATTATTCTATTCCCGCCGCAGTTC CTTCTTTTACATTTGGTGTCAGGATTCCTGGACAGAGAGCCTCGTGCAGATGCTTCCGTGGAAGAAATGGAGAAG CGTCGTCAAGCGCTTGTCGAGTTCGTTCATTCTGGCTCTCCTCCATGGACAGAGAAGTGCATATCCCCAAAATCT ATTCTCATGACCAGTGATGGGCGATCTGTGTTGGGTCTGAATGAACCCGGGCATGAGCTGAAAGGGTCTTCTAAG CGAGGAGAGTCCGAGAGAGTGGTTCTTGTGCGGTTCAAAAAAGGAAGTGCACGAGAGGTGGCTGTTGGATGGAAA AAGGACGTGTTGAAAAAAGAGAGGGAAAAGAGTAACCTGTAA |