Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3116.t1
Gene name
Locationscaffold_04:735780..737367
Strand+
Gene length (bp)1587
Transcript length (bp)1539
Coding sequence length (bp)1539
Protein length (aa) 513

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01409 tRNA-synt_2d tRNA synthetases class II core domain (F) 1.2E-86 205 502
PF18553 PheRS_DBD3 PheRS DNA binding domain 3 7.6E-15 71 127
PF17759 tRNA_synthFbeta Phenylalanyl tRNA synthetase beta chain CLM domain 9.9E-07 212 470

GO

GO Term Description Terminal node
GO:0005524 ATP binding Yes
GO:0000049 tRNA binding Yes
GO:0043039 tRNA aminoacylation Yes
GO:0004812 aminoacyl-tRNA ligase activity Yes
GO:0032553 ribonucleotide binding No
GO:0043436 oxoacid metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043168 anion binding No
GO:0140101 catalytic activity, acting on a tRNA No
GO:0032559 adenyl ribonucleotide binding No
GO:0044238 primary metabolic process No
GO:0003824 catalytic activity No
GO:1901360 organic cyclic compound metabolic process No
GO:0017076 purine nucleotide binding No
GO:0071704 organic substance metabolic process No
GO:0043038 amino acid activation No
GO:0006399 tRNA metabolic process No
GO:0019752 carboxylic acid metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0032555 purine ribonucleotide binding No
GO:1901363 heterocyclic compound binding No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0000166 nucleotide binding No
GO:0036094 small molecule binding No
GO:0044237 cellular metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0016070 RNA metabolic process No
GO:0005488 binding No
GO:0003723 RNA binding No
GO:0006725 cellular aromatic compound metabolic process No
GO:0003676 nucleic acid binding No
GO:0016875 ligase activity, forming carbon-oxygen bonds No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0043167 ion binding No
GO:0006807 nitrogen compound metabolic process No
GO:1901265 nucleoside phosphate binding No
GO:0003674 molecular_function No
GO:0008144 drug binding No
GO:0008150 biological_process No
GO:0140098 catalytic activity, acting on RNA No
GO:0016874 ligase activity No
GO:0044281 small molecule metabolic process No
GO:0008152 metabolic process No
GO:0006082 organic acid metabolic process No
GO:0006520 cellular amino acid metabolic process No
GO:0030554 adenyl nucleotide binding No
GO:0097367 carbohydrate derivative binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3116.t1
MASDLTNQILDALSASDAPILSSEAFPSTPSLNVKSALDRLDSRQMVEYETLDKEIVTLTAEGQEIATNGSHEAK
VFAVVLAALDGLKISDLPGIVGKENAKVGQGNAFKRGWIKKDKDLLRASTDSIVDETQQQLLEVQKTKNLDDKKA
LADLKRRKLVGLAKEISFKFTKGPKYAREFVKEQTDLTPEMIASGSWKTAHLKPYNFNAKGAPTPCGTLHPLNKV
RQEFRNIFFEMGFEEMPTNRFVETGFWNFDALFVPQQHPARDLQDTFYISDPAVADAPREDPPNDPHRPAQLKSE
KPLDYKKYWDNVREVHEHGKFGSIGYRYPWSADESLRLVLRTHTTSISTYMLHKLAANPRPARFFSIDRVFRNES
VDATHLAEFHQVEGVIADFGLTLGGLIGFMEVFFAKMGIHKLRFKPAYNPYTEPSMEIFGYHDGLGKWVEIGNSG
MFRPEMLESMGLPKDLRVYGWGLSLERPTMIKYAVSNIRELLGHKVDLDFIQTNPAVRLEKD*
Coding >Pro_DTO377G3_2|g3116.t1
ATGGCGTCCGACTTAACAAACCAGATCTTGGACGCCCTGTCCGCGTCCGATGCGCCCATCCTCTCCAGCGAAGCT
TTCCCCTCCACCCCCTCATTGAACGTTAAGAGTGCGCTCGATCGCCTTGATTCCCGCCAGATGGTCGAATATGAG
ACCTTGGACAAGGAAATCGTTACTCTCACTGCGGAGGGCCAGGAGATTGCCACTAATGGCAGTCACGAGGCCAAG
GTCTTCGCCGTGGTGCTTGCTGCTTTGGACGGATTGAAGATCTCCGACTTACCAGGAATTGTGGGCAAGGAGAAT
GCCAAAGTTGGCCAAGGAAACGCCTTCAAGCGTGGCTGGATTAAGAAGGATAAGGATTTGCTGCGGGCATCCACA
GATTCGATTGTCGACGAGACGCAACAGCAGCTGCTCGAGGTTCAAAAAACAAAGAACCTGGACGATAAGAAGGCC
CTGGCTGACCTCAAGCGGAGAAAGTTGGTCGGTCTGGCAAAGGAGATTTCTTTCAAGTTCACCAAGGGTCCCAAG
TACGCCCGAGAATTCGTCAAGGAGCAGACCGACCTCACCCCGGAGATGATCGCCAGTGGCTCGTGGAAGACGGCG
CATCTCAAGCCCTACAACTTCAATGCCAAGGGCGCCCCGACTCCATGTGGTACGCTACACCCGCTGAACAAGGTG
CGACAAGAGTTCCGCAACATCTTCTTCGAGATGGGTTTCGAGGAGATGCCGACGAACCGCTTCGTCGAGACCGGC
TTCTGGAACTTCGACGCTCTGTTTGTGCCCCAGCAACACCCCGCCCGTGATCTCCAGGATACCTTCTACATCTCC
GATCCTGCCGTGGCAGATGCTCCTCGCGAGGATCCCCCCAACGACCCCCACCGTCCAGCCCAATTAAAGTCCGAG
AAGCCACTTGACTACAAAAAGTACTGGGACAACGTCCGCGAAGTCCACGAGCATGGAAAGTTTGGCTCTATTGGC
TACCGCTACCCCTGGAGCGCGGATGAGTCGCTTCGCCTGGTGCTCCGCACCCACACCACCTCCATCTCGACCTAC
ATGCTGCACAAGCTGGCCGCCAACCCCCGGCCGGCTCGATTCTTCAGTATCGACCGTGTCTTCCGAAATGAGTCC
GTCGATGCTACCCATCTGGCAGAGTTCCACCAGGTCGAGGGTGTCATTGCCGACTTCGGTCTGACTCTTGGTGGC
CTGATTGGATTCATGGAGGTCTTCTTCGCCAAGATGGGCATCCACAAGCTGCGCTTCAAGCCCGCCTACAACCCC
TACACGGAGCCCAGTATGGAGATCTTCGGCTACCACGATGGTCTAGGCAAGTGGGTTGAGATCGGTAACAGTGGC
ATGTTCCGTCCAGAGATGCTGGAGTCCATGGGTCTACCTAAGGACTTGAGGGTCTACGGATGGGGATTGAGTCTG
GAGAGACCCACGATGATCAAGTACGCCGTCAGCAACATCCGTGAACTCCTCGGCCACAAGGTCGACCTGGACTTC
ATTCAGACCAACCCGGCTGTCCGTCTCGAGAAGGATTAA
Transcript >Pro_DTO377G3_2|g3116.t1
ATGGCGTCCGACTTAACAAACCAGATCTTGGACGCCCTGTCCGCGTCCGATGCGCCCATCCTCTCCAGCGAAGCT
TTCCCCTCCACCCCCTCATTGAACGTTAAGAGTGCGCTCGATCGCCTTGATTCCCGCCAGATGGTCGAATATGAG
ACCTTGGACAAGGAAATCGTTACTCTCACTGCGGAGGGCCAGGAGATTGCCACTAATGGCAGTCACGAGGCCAAG
GTCTTCGCCGTGGTGCTTGCTGCTTTGGACGGATTGAAGATCTCCGACTTACCAGGAATTGTGGGCAAGGAGAAT
GCCAAAGTTGGCCAAGGAAACGCCTTCAAGCGTGGCTGGATTAAGAAGGATAAGGATTTGCTGCGGGCATCCACA
GATTCGATTGTCGACGAGACGCAACAGCAGCTGCTCGAGGTTCAAAAAACAAAGAACCTGGACGATAAGAAGGCC
CTGGCTGACCTCAAGCGGAGAAAGTTGGTCGGTCTGGCAAAGGAGATTTCTTTCAAGTTCACCAAGGGTCCCAAG
TACGCCCGAGAATTCGTCAAGGAGCAGACCGACCTCACCCCGGAGATGATCGCCAGTGGCTCGTGGAAGACGGCG
CATCTCAAGCCCTACAACTTCAATGCCAAGGGCGCCCCGACTCCATGTGGTACGCTACACCCGCTGAACAAGGTG
CGACAAGAGTTCCGCAACATCTTCTTCGAGATGGGTTTCGAGGAGATGCCGACGAACCGCTTCGTCGAGACCGGC
TTCTGGAACTTCGACGCTCTGTTTGTGCCCCAGCAACACCCCGCCCGTGATCTCCAGGATACCTTCTACATCTCC
GATCCTGCCGTGGCAGATGCTCCTCGCGAGGATCCCCCCAACGACCCCCACCGTCCAGCCCAATTAAAGTCCGAG
AAGCCACTTGACTACAAAAAGTACTGGGACAACGTCCGCGAAGTCCACGAGCATGGAAAGTTTGGCTCTATTGGC
TACCGCTACCCCTGGAGCGCGGATGAGTCGCTTCGCCTGGTGCTCCGCACCCACACCACCTCCATCTCGACCTAC
ATGCTGCACAAGCTGGCCGCCAACCCCCGGCCGGCTCGATTCTTCAGTATCGACCGTGTCTTCCGAAATGAGTCC
GTCGATGCTACCCATCTGGCAGAGTTCCACCAGGTCGAGGGTGTCATTGCCGACTTCGGTCTGACTCTTGGTGGC
CTGATTGGATTCATGGAGGTCTTCTTCGCCAAGATGGGCATCCACAAGCTGCGCTTCAAGCCCGCCTACAACCCC
TACACGGAGCCCAGTATGGAGATCTTCGGCTACCACGATGGTCTAGGCAAGTGGGTTGAGATCGGTAACAGTGGC
ATGTTCCGTCCAGAGATGCTGGAGTCCATGGGTCTACCTAAGGACTTGAGGGTCTACGGATGGGGATTGAGTCTG
GAGAGACCCACGATGATCAAGTACGCCGTCAGCAACATCCGTGAACTCCTCGGCCACAAGGTCGACCTGGACTTC
ATTCAGACCAACCCGGCTGTCCGTCTCGAGAAGGATTAA
Gene >Pro_DTO377G3_2|g3116.t1
ATGGCGTCCGACTTAACAAACCAGATCTTGGACGCCCTGTCCGCGTCCGATGCGCCCATCCTCTCCAGCGAAGCT
TTCCCCTCCACCCCCTCATTGAACGTTAAGAGTGCGCTCGATCGCCTTGATTCCCGCCAGATGGTCGAATATGAG
ACCTTGGACAAGGAAATCGTTACTCTCACTGCGGAGGGCCAGGAGATTGCCACTAATGGCAGTCACGAGGCCAAG
GTCTTCGCCGTGGTGCTTGCTGCTTTGGACGGATTGAAGATCTCCGACTTACCAGGAATTGTGGGCAAGGAGAAT
GCCAAAGTTGGCCAAGGAAACGCCTTCAAGCGTGGCTGGATTAAGAAGGATAAGGATTTGCTGCGGGCATCCACA
GATTCGATTGTCGACGAGACGCAACAGCAGCTGCTCGAGGTTCAAAAAACAAAGAACCTGGACGATAAGAAGGCC
CTGGCTGACCTCAAGCGGAGAAAGTTGGTCGGTCTGGCAAAGGAGATTTCTTTCAAGTTCACCAAGGGTCCCAAG
TACGCCCGAGAATTCGTCAAGGAGCAGACCGACCTCACCCCGGAGATGATCGCCAGTGGCTCGTGGAAGACGGCG
CATCTCAAGCCCTACAACTTCAATGCCAAGGGCGCCCCGACTCCATGTGGTACGCTACACCCGCTGAACAAGGTG
CGACAAGAGTTCCGCAACATCTTCTTCGAGATGGGTTTCGAGGAGATGCCGACGAACCGCTTCGTCGAGACCGGC
TTCTGGAACTTCGACGCTCTGTTTGTGCCCCAGCAACACCCCGCCCGTGATCTCCAGGATACCTTCTACATCTCC
GATCCTGCCGTGGCAGATGCTCCTCGCGAGGATCCCCCCAACGACCCCCACCGTCCAGCCCAATTAAAGTCCGAG
AAGCCACTTGACTACAAAAAGTACTGGGACAACGTCCGCGAAGTCCACGAGCATGGAAAGTTTGGCTCTATTGGC
TACCGCTACCCCTGGAGCGCGGATGAGTCGCTTCGCCTGGTGCTCCGCACCCACACCACCTCCATCTCGACCTAC
ATGCTGCACAAGCTGGCCGCCAACCCCCGGCCGGCTCGATTCTTCAGTATCGACCGTGTCTTCCGAAATGAGTCC
GTCGATGCTACCCATCTGGCAGAGTTCCACCAGGTCGAGGGTGTCATTGCCGACTTCGGTCTGACTCTTGGTGGC
CTGATTGGATTCATGGAGGTCTTCTTCGCCAAGATGGGCATCCACAAGCTGCGCTTCAAGCCCGCCTACAACCCC
TACACGGAGCCCAGTATGGAGATCTTCGGCTACCACGATGGTCTAGGCAAGTGGGTTGAGATCGGTAACAGTGGC
ATGTTCCGTCCAGAGATGCTGGAGTCCATGGGTCTACCTAAGGACTTGAGGGTCTACGGATGGGGATTGAGTCTG
GAGAGACCCACGATGATCAAGTACGTTGCATCATCTACCTTTCGTTTACATTTACTAATATCTCTTAGGTACGCC
GTCAGCAACATCCGTGAACTCCTCGGCCACAAGGTCGACCTGGACTTCATTCAGACCAACCCGGCTGTCCGTCTC
GAGAAGGATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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