© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g311.t1 |
| Gene name | |
| Location | scaffold_01:792209..793127 |
| Strand | - |
| Gene length (bp) | 918 |
| Transcript length (bp) | 918 |
| Coding sequence length (bp) | 918 |
| Protein length (aa) | 306 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 5.1E-53 | 90 | 296 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 47 | 69 | 22 |
| 2 | 84 | 101 | 17 |
| 3 | 121 | 143 | 22 |
| 4 | 158 | 180 | 22 |
| 5 | 193 | 215 | 22 |
| 6 | 225 | 247 | 22 |
| 7 | 268 | 290 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 8.18 | 2.44 | 13.91 |
| 5d_25C | Five days - 25 degrees Celsius | 3.52 | 0.63 | 6.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.97 | 1.08 | 8.87 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.09 | 1.22 | 8.96 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.91 | 0.06 | 3.75 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.62 | 2.67 | 14.58 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.035243 | yes |
| 3d_25C | 7d_25C | 0.259329 | no |
| 3d_25C | 7d_15C | 0.001804 | yes |
| 3d_25C | 7d_30C | 0.927597 | no |
| 3d_25C | 10d_25C | 0.257364 | no |
| 5d_25C | 7d_25C | 0.516742 | no |
| 5d_25C | 7d_15C | 0.252167 | no |
| 5d_25C | 7d_30C | 0.024170 | yes |
| 5d_25C | 10d_25C | 0.456032 | no |
| 7d_25C | 7d_15C | 0.053684 | no |
| 7d_25C | 7d_30C | 0.199359 | no |
| 7d_25C | 10d_25C | 0.972881 | no |
| 7d_15C | 7d_30C | 0.001804 | yes |
| 7d_15C | 10d_25C | 0.048822 | yes |
| 7d_30C | 10d_25C | 0.202808 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g311.t1 MVHYITGTALERSSPGPSFQITNGKIARSYGYVDPYFPNPGGENDTPVIIYGYTPSIALAAFAAAWFFLHFVYHT TQSIKNRSWWWMTFSAGLVFEVVGYIARSLSAKKDPYHLIYFILNYFFIVVAPVLLAAGVYTILSALIPRVGSQY SFLPPRVILAFFITSDVISTIVQIAGACLIGVTESRREDPTTANNILLGGLAYQVFVMTIFVIVAASFQFRARLA IRANGLGLFCLAFSISTLMIYLRTIFRLAETAQGLMGELQTNEVYFACLEFAPIALVALLFAVWYPGRCVGAAVL VNDKP* |
| Coding | >Pro_DTO377G3_2|g311.t1 ATGGTTCACTACATCACAGGCACCGCACTTGAACGCAGCTCTCCAGGGCCATCGTTTCAGATCACTAATGGAAAA ATAGCACGCTCATATGGCTATGTTGACCCCTACTTTCCAAATCCGGGCGGCGAAAATGACACCCCCGTGATCATC TATGGCTACACTCCTTCCATTGCCCTAGCTGCCTTCGCAGCCGCGTGGTTTTTTCTTCACTTCGTCTACCACACG ACTCAATCTATCAAGAACCGCAGCTGGTGGTGGATGACCTTTTCCGCCGGTCTGGTTTTCGAGGTTGTAGGGTAC ATTGCACGATCCCTCTCCGCTAAGAAGGATCCCTATCACCTCATCTACTTCATCCTCAACTACTTTTTTATCGTT GTGGCACCTGTATTGCTTGCCGCTGGCGTCTACACGATTCTCTCGGCACTGATCCCACGAGTAGGGAGCCAGTAC TCATTCTTACCTCCAAGGGTCATCCTAGCCTTCTTCATTACTTCGGATGTCATCTCAACAATCGTCCAGATCGCC GGTGCGTGTCTCATTGGCGTTACAGAGTCGCGCCGGGAAGATCCCACAACGGCGAACAATATCCTCCTGGGCGGC CTCGCATACCAGGTCTTTGTCATGACTATCTTTGTTATCGTGGCGGCGAGTTTCCAGTTCCGAGCTCGACTTGCT ATCAGAGCGAATGGGCTTGGGCTCTTCTGCTTGGCTTTTTCAATTTCGACCCTCATGATCTATTTGAGAACTATC TTCCGTCTTGCGGAAACCGCCCAGGGTCTCATGGGAGAGCTGCAAACCAATGAGGTCTATTTCGCATGCCTTGAA TTCGCGCCTATTGCGTTAGTGGCTCTTCTCTTTGCCGTCTGGTATCCCGGCCGCTGTGTAGGTGCCGCGGTGCTG GTTAACGATAAACCATAG |
| Transcript | >Pro_DTO377G3_2|g311.t1 ATGGTTCACTACATCACAGGCACCGCACTTGAACGCAGCTCTCCAGGGCCATCGTTTCAGATCACTAATGGAAAA ATAGCACGCTCATATGGCTATGTTGACCCCTACTTTCCAAATCCGGGCGGCGAAAATGACACCCCCGTGATCATC TATGGCTACACTCCTTCCATTGCCCTAGCTGCCTTCGCAGCCGCGTGGTTTTTTCTTCACTTCGTCTACCACACG ACTCAATCTATCAAGAACCGCAGCTGGTGGTGGATGACCTTTTCCGCCGGTCTGGTTTTCGAGGTTGTAGGGTAC ATTGCACGATCCCTCTCCGCTAAGAAGGATCCCTATCACCTCATCTACTTCATCCTCAACTACTTTTTTATCGTT GTGGCACCTGTATTGCTTGCCGCTGGCGTCTACACGATTCTCTCGGCACTGATCCCACGAGTAGGGAGCCAGTAC TCATTCTTACCTCCAAGGGTCATCCTAGCCTTCTTCATTACTTCGGATGTCATCTCAACAATCGTCCAGATCGCC GGTGCGTGTCTCATTGGCGTTACAGAGTCGCGCCGGGAAGATCCCACAACGGCGAACAATATCCTCCTGGGCGGC CTCGCATACCAGGTCTTTGTCATGACTATCTTTGTTATCGTGGCGGCGAGTTTCCAGTTCCGAGCTCGACTTGCT ATCAGAGCGAATGGGCTTGGGCTCTTCTGCTTGGCTTTTTCAATTTCGACCCTCATGATCTATTTGAGAACTATC TTCCGTCTTGCGGAAACCGCCCAGGGTCTCATGGGAGAGCTGCAAACCAATGAGGTCTATTTCGCATGCCTTGAA TTCGCGCCTATTGCGTTAGTGGCTCTTCTCTTTGCCGTCTGGTATCCCGGCCGCTGTGTAGGTGCCGCGGTGCTG GTTAACGATAAACCATAG |
| Gene | >Pro_DTO377G3_2|g311.t1 ATGGTTCACTACATCACAGGCACCGCACTTGAACGCAGCTCTCCAGGGCCATCGTTTCAGATCACTAATGGAAAA ATAGCACGCTCATATGGCTATGTTGACCCCTACTTTCCAAATCCGGGCGGCGAAAATGACACCCCCGTGATCATC TATGGCTACACTCCTTCCATTGCCCTAGCTGCCTTCGCAGCCGCGTGGTTTTTTCTTCACTTCGTCTACCACACG ACTCAATCTATCAAGAACCGCAGCTGGTGGTGGATGACCTTTTCCGCCGGTCTGGTTTTCGAGGTTGTAGGGTAC ATTGCACGATCCCTCTCCGCTAAGAAGGATCCCTATCACCTCATCTACTTCATCCTCAACTACTTTTTTATCGTT GTGGCACCTGTATTGCTTGCCGCTGGCGTCTACACGATTCTCTCGGCACTGATCCCACGAGTAGGGAGCCAGTAC TCATTCTTACCTCCAAGGGTCATCCTAGCCTTCTTCATTACTTCGGATGTCATCTCAACAATCGTCCAGATCGCC GGTGCGTGTCTCATTGGCGTTACAGAGTCGCGCCGGGAAGATCCCACAACGGCGAACAATATCCTCCTGGGCGGC CTCGCATACCAGGTCTTTGTCATGACTATCTTTGTTATCGTGGCGGCGAGTTTCCAGTTCCGAGCTCGACTTGCT ATCAGAGCGAATGGGCTTGGGCTCTTCTGCTTGGCTTTTTCAATTTCGACCCTCATGATCTATTTGAGAACTATC TTCCGTCTTGCGGAAACCGCCCAGGGTCTCATGGGAGAGCTGCAAACCAATGAGGTCTATTTCGCATGCCTTGAA TTCGCGCCTATTGCGTTAGTGGCTCTTCTCTTTGCCGTCTGGTATCCCGGCCGCTGTGTAGGTGCCGCGGTGCTG GTTAACGATAAACCATAG |