© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3105.t1 |
| Gene name | |
| Location | scaffold_04:705975..707464 |
| Strand | - |
| Gene length (bp) | 1489 |
| Transcript length (bp) | 1368 |
| Coding sequence length (bp) | 1368 |
| Protein length (aa) | 456 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00840 | Glyco_hydro_7 | Glycosyl hydrolase family 7 | 1.0E-207 | 21 | 452 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 12.32 | 5.36 | 19.28 |
| 5d_25C | Five days - 25 degrees Celsius | 12.65 | 5.57 | 19.72 |
| 7d_25C | Seven days - 25 degrees Celsius | 13.71 | 6.13 | 21.29 |
| 10d_25C | Ten days - 25 degrees Celsius | 14.48 | 6.58 | 22.38 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.94 | 4.56 | 17.33 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.89 | 5.09 | 18.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.958111 | no |
| 3d_25C | 7d_25C | 0.803554 | no |
| 3d_25C | 7d_15C | 0.783373 | no |
| 3d_25C | 7d_30C | 0.940984 | no |
| 3d_25C | 10d_25C | 0.677784 | no |
| 5d_25C | 7d_25C | 0.858022 | no |
| 5d_25C | 7d_15C | 0.733844 | no |
| 5d_25C | 7d_30C | 0.897086 | no |
| 5d_25C | 10d_25C | 0.738285 | no |
| 7d_25C | 7d_15C | 0.561423 | no |
| 7d_25C | 7d_30C | 0.732762 | no |
| 7d_25C | 10d_25C | 0.906566 | no |
| 7d_15C | 7d_30C | 0.857680 | no |
| 7d_15C | 10d_25C | 0.430335 | no |
| 7d_30C | 10d_25C | 0.600505 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3105.t1 MYQRALLFSVLAAAARAQQAGTLTAETHPSLTWQKCTTAGSCTDQQGSVVIDANWRWLHSVDGYTNCYTGNEWDA TLCPDDETCATNCALDGADYAGTYGATTDGNALTLSFVTGANIGSRLYLMEDESTYQIFKLKNQEFTFDVDTSGL PCGLNGALYFVSMDSDGGLAKYTGNKAGAKYGTGYCDSQCPRDLKFINGQANVDGWVPSENDKNAGVGGHGSCCP EMDIWEANSISTAYTPHPCDSPEQTMCEGDDCGGTYSSTRYAGTCDPDGCDFNSFRMGNETFFGPGMTVDTKSKI TVVTQFITSDGTDTGTLSEIKRIYVQDGKVIANSASDVSGVTGNSITTDFCTAQKKAFGDEDIFAQHGGLATMGE GLDQGMVLVMSLWDDHYANMLWLDGEVYPTDASASDPGAARGTCATTSGDPATVEAESGSAKVTYSNIKVGPIGS TYASS* |
| Coding | >Pro_DTO377G3_2|g3105.t1 ATGTATCAACGCGCACTCCTTTTCTCCGTCCTGGCGGCCGCAGCCCGTGCCCAGCAAGCTGGCACATTGACGGCT GAGACCCATCCCTCTTTGACCTGGCAAAAGTGCACTACCGCGGGCAGTTGCACCGACCAGCAGGGCTCTGTTGTC ATTGATGCCAACTGGCGTTGGCTTCACTCTGTCGATGGTTACACCAACTGCTACACTGGAAACGAGTGGGATGCG ACTCTCTGCCCCGATGACGAGACTTGCGCCACTAACTGTGCGTTGGACGGCGCTGACTACGCCGGCACATACGGT GCGACCACTGATGGCAATGCCCTCACTTTGAGCTTCGTCACTGGCGCCAACATTGGCTCTCGTCTGTACCTGATG GAGGACGAGAGTACCTACCAGATATTCAAGCTGAAGAACCAGGAGTTCACATTCGACGTGGATACTTCCGGGTTG CCCTGCGGACTCAATGGAGCTCTGTACTTTGTCTCCATGGATTCCGATGGTGGCCTGGCTAAGTACACGGGGAAC AAGGCAGGTGCCAAGTACGGAACTGGCTATTGCGATTCTCAGTGCCCTCGTGATCTGAAGTTCATCAACGGCCAG GCCAACGTGGACGGCTGGGTGCCTTCCGAGAACGACAAGAACGCTGGTGTTGGCGGCCATGGATCTTGCTGCCCT GAGATGGATATCTGGGAAGCCAATAGCATTTCCACTGCTTACACGCCTCACCCTTGCGACAGCCCTGAACAGACT ATGTGCGAGGGCGATGATTGTGGCGGAACTTACTCTTCCACCCGCTACGCAGGAACCTGCGATCCCGATGGATGT GACTTTAACTCCTTCCGCATGGGAAATGAGACCTTCTTCGGTCCCGGCATGACTGTTGACACTAAGTCCAAGATA ACCGTGGTCACTCAGTTCATCACCAGCGACGGCACCGACACCGGCACCCTCAGCGAGATCAAGCGCATCTACGTC CAGGACGGAAAAGTCATCGCCAACTCAGCCTCGGATGTTAGCGGTGTCACCGGAAACTCGATCACCACCGACTTC TGCACAGCCCAGAAGAAAGCCTTCGGCGATGAGGATATCTTCGCCCAGCACGGTGGTCTGGCTACCATGGGCGAG GGGTTGGACCAGGGAATGGTCCTTGTCATGAGCCTGTGGGATGACCACTATGCTAACATGCTCTGGTTGGATGGG GAGGTCTACCCCACTGATGCATCTGCCTCCGATCCCGGTGCTGCTCGCGGCACATGCGCCACCACTTCCGGCGAC CCAGCAACCGTTGAGGCCGAGTCGGGCTCGGCCAAGGTGACCTACTCTAACATCAAGGTCGGCCCCATTGGCTCC ACCTACGCTTCTTCCTAG |
| Transcript | >Pro_DTO377G3_2|g3105.t1 ATGTATCAACGCGCACTCCTTTTCTCCGTCCTGGCGGCCGCAGCCCGTGCCCAGCAAGCTGGCACATTGACGGCT GAGACCCATCCCTCTTTGACCTGGCAAAAGTGCACTACCGCGGGCAGTTGCACCGACCAGCAGGGCTCTGTTGTC ATTGATGCCAACTGGCGTTGGCTTCACTCTGTCGATGGTTACACCAACTGCTACACTGGAAACGAGTGGGATGCG ACTCTCTGCCCCGATGACGAGACTTGCGCCACTAACTGTGCGTTGGACGGCGCTGACTACGCCGGCACATACGGT GCGACCACTGATGGCAATGCCCTCACTTTGAGCTTCGTCACTGGCGCCAACATTGGCTCTCGTCTGTACCTGATG GAGGACGAGAGTACCTACCAGATATTCAAGCTGAAGAACCAGGAGTTCACATTCGACGTGGATACTTCCGGGTTG CCCTGCGGACTCAATGGAGCTCTGTACTTTGTCTCCATGGATTCCGATGGTGGCCTGGCTAAGTACACGGGGAAC AAGGCAGGTGCCAAGTACGGAACTGGCTATTGCGATTCTCAGTGCCCTCGTGATCTGAAGTTCATCAACGGCCAG GCCAACGTGGACGGCTGGGTGCCTTCCGAGAACGACAAGAACGCTGGTGTTGGCGGCCATGGATCTTGCTGCCCT GAGATGGATATCTGGGAAGCCAATAGCATTTCCACTGCTTACACGCCTCACCCTTGCGACAGCCCTGAACAGACT ATGTGCGAGGGCGATGATTGTGGCGGAACTTACTCTTCCACCCGCTACGCAGGAACCTGCGATCCCGATGGATGT GACTTTAACTCCTTCCGCATGGGAAATGAGACCTTCTTCGGTCCCGGCATGACTGTTGACACTAAGTCCAAGATA ACCGTGGTCACTCAGTTCATCACCAGCGACGGCACCGACACCGGCACCCTCAGCGAGATCAAGCGCATCTACGTC CAGGACGGAAAAGTCATCGCCAACTCAGCCTCGGATGTTAGCGGTGTCACCGGAAACTCGATCACCACCGACTTC TGCACAGCCCAGAAGAAAGCCTTCGGCGATGAGGATATCTTCGCCCAGCACGGTGGTCTGGCTACCATGGGCGAG GGGTTGGACCAGGGAATGGTCCTTGTCATGAGCCTGTGGGATGACCACTATGCTAACATGCTCTGGTTGGATGGG GAGGTCTACCCCACTGATGCATCTGCCTCCGATCCCGGTGCTGCTCGCGGCACATGCGCCACCACTTCCGGCGAC CCAGCAACCGTTGAGGCCGAGTCGGGCTCGGCCAAGGTGACCTACTCTAACATCAAGGTCGGCCCCATTGGCTCC ACCTACGCTTCTTCCTAG |
| Gene | >Pro_DTO377G3_2|g3105.t1 ATGTATCAACGCGCACTCCTTTTCTCCGTCCTGGCGGCCGCAGCCCGTGCCCAGCAAGCTGGCACATTGACGGCT GAGACCCATCCCTCTTTGACCTGGCAAAAGTGCACTACCGCGGGCAGTTGCACCGACCAGCAGGGCTCTGTTGTC ATTGATGCCAACTGGCGTTGGCTTCACTCTGTCGATGGTTACACCAACTGCTACACTGGAAACGAGGTAAGAGAT CCTCAACCGAGAAGGTGAGCGTTCACATTGATTGACTTGTTTGATGATAGTGGGATGCGACTCTCTGCCCCGATG ACGAGACTTGCGCCACTAACTGTGCGTTGGACGGCGCTGACTACGCCGGCACATACGGTGCGACCACTGATGGCA ATGCCCTCACTTTGAGCTTCGTCACTGGCGCCAACATTGGCTCTCGTCTGTACCTGATGGAGGACGAGAGTACCT ACCAGATATTCAAGCTGAAGAACCAGGAGTTCACATTCGACGTGGATACTTCCGGGTTGCCCTGCGGACTCAATG GAGCTCTGTACTTTGTCTCCATGGATTCCGATGGTGGCCTGGCTAAGTACACGGGGAACAAGGCAGGTGCCAAGT ACGGAACTGGCTATTGCGATTCTCAGTGCCCTCGTGATCTGAAGTTCATCAACGGCCAGGTGAGTTTTTATACTG GTCAATTCGAACGGTTTGCGGGCAAAGTGACTGATGCGCGATACAGGCCAACGTGGACGGCTGGGTGCCTTCCGA GAACGACAAGAACGCTGGTGTTGGCGGCCATGGATCTTGCTGCCCTGAGATGGATATCTGGGAAGCCAATAGCAT TTCCACTGCTTACACGCCTCACCCTTGCGACAGCCCTGAACAGACTATGTGCGAGGGCGATGATTGTGGCGGAAC TTACTCTTCCACCCGCTACGCAGGAACCTGCGATCCCGATGGATGTGACTTTAACTCCTTCCGCATGGGAAATGA GACCTTCTTCGGTCCCGGCATGACTGTTGACACTAAGTCCAAGATAACCGTGGTCACTCAGTTCATCACCAGCGA CGGCACCGACACCGGCACCCTCAGCGAGATCAAGCGCATCTACGTCCAGGACGGAAAAGTCATCGCCAACTCAGC CTCGGATGTTAGCGGTGTCACCGGAAACTCGATCACCACCGACTTCTGCACAGCCCAGAAGAAAGCCTTCGGCGA TGAGGATATCTTCGCCCAGCACGGTGGTCTGGCTACCATGGGCGAGGGGTTGGACCAGGGAATGGTCCTTGTCAT GAGCCTGTGGGATGACCACTATGCTAACATGCTCTGGTTGGATGGGGAGGTCTACCCCACTGATGCATCTGCCTC CGATCCCGGTGCTGCTCGCGGCACATGCGCCACCACTTCCGGCGACCCAGCAACCGTTGAGGCCGAGTCGGGCTC GGCCAAGGTGACCTACTCTAACATCAAGGTCGGCCCCATTGGCTCCACCTACGCTTCTTCCTAG |