© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3093.t1 |
| Gene name | |
| Location | scaffold_04:682707..684273 |
| Strand | + |
| Gene length (bp) | 1566 |
| Transcript length (bp) | 1503 |
| Coding sequence length (bp) | 1503 |
| Protein length (aa) | 501 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03006 | HlyIII | Haemolysin-III related | 7.6E-60 | 255 | 477 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 262 | 284 | 22 |
| 2 | 297 | 319 | 22 |
| 3 | 334 | 356 | 22 |
| 4 | 363 | 385 | 22 |
| 5 | 395 | 414 | 19 |
| 6 | 421 | 443 | 22 |
| 7 | 458 | 480 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 72.84 | 44.33 | 101.36 |
| 5d_25C | Five days - 25 degrees Celsius | 82.53 | 50.17 | 114.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 88.60 | 54.03 | 123.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 112.30 | 68.37 | 156.23 |
| 7d_15C | Seven days - 15 degrees Celsius | 68.37 | 40.94 | 95.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 68.59 | 41.16 | 96.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.657396 | no |
| 3d_25C | 7d_25C | 0.438580 | no |
| 3d_25C | 7d_15C | 0.843445 | no |
| 3d_25C | 7d_30C | 0.850166 | no |
| 3d_25C | 10d_25C | 0.040599 | yes |
| 5d_25C | 7d_25C | 0.820040 | no |
| 5d_25C | 7d_15C | 0.461805 | no |
| 5d_25C | 7d_30C | 0.464367 | no |
| 5d_25C | 10d_25C | 0.169389 | no |
| 7d_25C | 7d_15C | 0.274201 | no |
| 7d_25C | 7d_30C | 0.281482 | no |
| 7d_25C | 10d_25C | 0.318807 | no |
| 7d_15C | 7d_30C | 0.993166 | no |
| 7d_15C | 10d_25C | 0.015558 | yes |
| 7d_30C | 10d_25C | 0.018560 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3093.t1 MACGASSMTAQSPEAEAFASATATPDENTGMLRDRRRHSFHASRKLSCDYQDADAVFIRVELFLSELERRMHWIE QYRKSHMVQVDASLKRGYATLEAVRDQCSLASGELMGSGKKRAKILVETLEDGYNEALVTKETLEQKAQAGVRLM ESFLVELESKVHAVRDRGIYGTIDDGWKAVDSGLVHAREIVDEGMERARHARDTLRDTIEEAIRLAKEKRLINYD ELPHPWRVNPHILNGYRFTTSKVECVSSIFAFSNEMFNIWSHVIGLIIVLAIAFYFYPLHTNFHLSSKSDVTIAA VFFFAACKCLVCSTIWHTMNSIASQPLMERFACVDYTGISMLVAASIVTTEYTAFYCEPFSRWVYILLTMSFGIG GIILPWHPTFNRHDMAWARVGFYVTLALTGFSPIAQLIYTRGFSWTMYFYAPVMKSIMVYFIGACVYASKVPERW KPGLFDYVGGSHNIWHLAVLGGIFFHYHAMQDLFAGAFQRALGECPNMTM* |
| Coding | >Pro_DTO377G3_2|g3093.t1 ATGGCTTGCGGCGCTTCTTCAATGACGGCGCAGTCTCCTGAAGCAGAGGCATTTGCCTCTGCCACTGCGACCCCC GATGAGAATACCGGTATGCTCCGTGATCGGCGCAGACATTCGTTCCATGCTTCTAGAAAACTCTCGTGCGACTAT CAAGATGCAGATGCAGTATTTATCAGGGTCGAACTCTTCTTATCCGAACTGGAACGTCGGATGCACTGGATCGAG CAATACCGGAAATCCCACATGGTGCAAGTCGATGCCAGTCTGAAACGAGGCTATGCTACGCTGGAAGCCGTGAGA GATCAATGCTCTCTCGCCTCGGGAGAGTTGATGGGAAGTGGCAAAAAGCGGGCCAAGATTCTGGTTGAAACCCTC GAGGATGGATACAATGAAGCCCTGGTGACCAAGGAGACTCTGGAACAAAAGGCGCAAGCCGGTGTGCGGTTAATG GAGTCATTCTTGGTCGAACTTGAGAGCAAAGTGCATGCGGTTCGCGATCGCGGCATCTACGGAACTATAGATGAC GGGTGGAAAGCGGTCGATTCGGGCTTGGTTCACGCCCGAGAAATCGTTGACGAGGGTATGGAGCGTGCCCGCCAT GCTCGTGATACTCTGCGAGATACTATTGAGGAAGCTATCCGGCTAGCCAAGGAGAAGCGATTGATCAACTACGAT GAACTACCTCACCCATGGCGCGTCAACCCGCACATCCTCAATGGCTACCGATTCACCACTTCCAAGGTAGAATGT GTCTCGTCGATTTTCGCCTTCTCGAATGAAATGTTCAACATCTGGTCCCATGTGATCGGCCTCATCATCGTCCTA GCCATCGCCTTTTACTTCTACCCGCTTCACACCAATTTCCACTTGAGCTCCAAATCCGACGTCACAATCGCTGCC GTCTTCTTCTTTGCTGCATGTAAATGTCTAGTCTGCAGCACTATTTGGCATACTATGAACAGCATTGCTTCGCAA CCATTGATGGAACGATTCGCTTGTGTGGACTACACTGGAATCTCTATGCTCGTCGCTGCCTCGATTGTGACGACC GAGTACACTGCTTTCTATTGCGAGCCCTTCTCCCGGTGGGTATACATTCTGCTTACCATGTCATTCGGCATCGGT GGCATCATTCTACCTTGGCACCCAACCTTCAACCGCCACGATATGGCATGGGCCCGCGTAGGATTCTACGTGACC CTTGCACTCACTGGTTTCTCGCCCATAGCGCAGCTTATTTATACCCGTGGCTTCTCATGGACCATGTATTTCTAT GCACCAGTCATGAAGAGCATCATGGTGTATTTTATCGGTGCCTGTGTCTACGCTTCCAAAGTTCCTGAGCGCTGG AAGCCAGGTCTTTTCGATTATGTCGGTGGCAGCCACAATATCTGGCACCTGGCTGTCCTGGGTGGGATTTTCTTC CACTATCACGCCATGCAGGACTTGTTCGCGGGGGCCTTCCAACGAGCCCTGGGCGAGTGTCCGAACATGACGATG TGA |
| Transcript | >Pro_DTO377G3_2|g3093.t1 ATGGCTTGCGGCGCTTCTTCAATGACGGCGCAGTCTCCTGAAGCAGAGGCATTTGCCTCTGCCACTGCGACCCCC GATGAGAATACCGGTATGCTCCGTGATCGGCGCAGACATTCGTTCCATGCTTCTAGAAAACTCTCGTGCGACTAT CAAGATGCAGATGCAGTATTTATCAGGGTCGAACTCTTCTTATCCGAACTGGAACGTCGGATGCACTGGATCGAG CAATACCGGAAATCCCACATGGTGCAAGTCGATGCCAGTCTGAAACGAGGCTATGCTACGCTGGAAGCCGTGAGA GATCAATGCTCTCTCGCCTCGGGAGAGTTGATGGGAAGTGGCAAAAAGCGGGCCAAGATTCTGGTTGAAACCCTC GAGGATGGATACAATGAAGCCCTGGTGACCAAGGAGACTCTGGAACAAAAGGCGCAAGCCGGTGTGCGGTTAATG GAGTCATTCTTGGTCGAACTTGAGAGCAAAGTGCATGCGGTTCGCGATCGCGGCATCTACGGAACTATAGATGAC GGGTGGAAAGCGGTCGATTCGGGCTTGGTTCACGCCCGAGAAATCGTTGACGAGGGTATGGAGCGTGCCCGCCAT GCTCGTGATACTCTGCGAGATACTATTGAGGAAGCTATCCGGCTAGCCAAGGAGAAGCGATTGATCAACTACGAT GAACTACCTCACCCATGGCGCGTCAACCCGCACATCCTCAATGGCTACCGATTCACCACTTCCAAGGTAGAATGT GTCTCGTCGATTTTCGCCTTCTCGAATGAAATGTTCAACATCTGGTCCCATGTGATCGGCCTCATCATCGTCCTA GCCATCGCCTTTTACTTCTACCCGCTTCACACCAATTTCCACTTGAGCTCCAAATCCGACGTCACAATCGCTGCC GTCTTCTTCTTTGCTGCATGTAAATGTCTAGTCTGCAGCACTATTTGGCATACTATGAACAGCATTGCTTCGCAA CCATTGATGGAACGATTCGCTTGTGTGGACTACACTGGAATCTCTATGCTCGTCGCTGCCTCGATTGTGACGACC GAGTACACTGCTTTCTATTGCGAGCCCTTCTCCCGGTGGGTATACATTCTGCTTACCATGTCATTCGGCATCGGT GGCATCATTCTACCTTGGCACCCAACCTTCAACCGCCACGATATGGCATGGGCCCGCGTAGGATTCTACGTGACC CTTGCACTCACTGGTTTCTCGCCCATAGCGCAGCTTATTTATACCCGTGGCTTCTCATGGACCATGTATTTCTAT GCACCAGTCATGAAGAGCATCATGGTGTATTTTATCGGTGCCTGTGTCTACGCTTCCAAAGTTCCTGAGCGCTGG AAGCCAGGTCTTTTCGATTATGTCGGTGGCAGCCACAATATCTGGCACCTGGCTGTCCTGGGTGGGATTTTCTTC CACTATCACGCCATGCAGGACTTGTTCGCGGGGGCCTTCCAACGAGCCCTGGGCGAGTGTCCGAACATGACGATG TGA |
| Gene | >Pro_DTO377G3_2|g3093.t1 ATGGCTTGCGGCGCTTCTTCAATGACGGCGCAGTCTCCTGAAGCAGAGGCATTTGCCTCTGCCACTGCGACCCCC GATGAGAATACCGGTATGCTCCGTGATCGGCGCAGACATTCGTTCCATGCTTCTAGAAAACTCTCGTGCGACTAT CAAGATGCAGATGCAGTATTTATCAGGGTATGTACATGCATTACCAGTGGAAAATATACCCGGGAAATAGTGTGT CTAATCAACTCCTAGGTCGAACTCTTCTTATCCGAACTGGAACGTCGGATGCACTGGATCGAGCAATACCGGAAA TCCCACATGGTGCAAGTCGATGCCAGTCTGAAACGAGGCTATGCTACGCTGGAAGCCGTGAGAGATCAATGCTCT CTCGCCTCGGGAGAGTTGATGGGAAGTGGCAAAAAGCGGGCCAAGATTCTGGTTGAAACCCTCGAGGATGGATAC AATGAAGCCCTGGTGACCAAGGAGACTCTGGAACAAAAGGCGCAAGCCGGTGTGCGGTTAATGGAGTCATTCTTG GTCGAACTTGAGAGCAAAGTGCATGCGGTTCGCGATCGCGGCATCTACGGAACTATAGATGACGGGTGGAAAGCG GTCGATTCGGGCTTGGTTCACGCCCGAGAAATCGTTGACGAGGGTATGGAGCGTGCCCGCCATGCTCGTGATACT CTGCGAGATACTATTGAGGAAGCTATCCGGCTAGCCAAGGAGAAGCGATTGATCAACTACGATGAACTACCTCAC CCATGGCGCGTCAACCCGCACATCCTCAATGGCTACCGATTCACCACTTCCAAGGTAGAATGTGTCTCGTCGATT TTCGCCTTCTCGAATGAAATGTTCAACATCTGGTCCCATGTGATCGGCCTCATCATCGTCCTAGCCATCGCCTTT TACTTCTACCCGCTTCACACCAATTTCCACTTGAGCTCCAAATCCGACGTCACAATCGCTGCCGTCTTCTTCTTT GCTGCATGTAAATGTCTAGTCTGCAGCACTATTTGGCATACTATGAACAGCATTGCTTCGCAACCATTGATGGAA CGATTCGCTTGTGTGGACTACACTGGAATCTCTATGCTCGTCGCTGCCTCGATTGTGACGACCGAGTACACTGCT TTCTATTGCGAGCCCTTCTCCCGGTGGGTATACATTCTGCTTACCATGTCATTCGGCATCGGTGGCATCATTCTA CCTTGGCACCCAACCTTCAACCGCCACGATATGGCATGGGCCCGCGTAGGATTCTACGTGACCCTTGCACTCACT GGTTTCTCGCCCATAGCGCAGCTTATTTATACCCGTGGCTTCTCATGGACCATGTATTTCTATGCACCAGTCATG AAGAGCATCATGGTGTATTTTATCGGTGCCTGTGTCTACGCTTCCAAAGTTCCTGAGCGCTGGAAGCCAGGTCTT TTCGATTATGTCGGTGGCAGCCACAATATCTGGCACCTGGCTGTCCTGGGTGGGATTTTCTTCCACTATCACGCC ATGCAGGACTTGTTCGCGGGGGCCTTCCAACGAGCCCTGGGCGAGTGTCCGAACATGACGATGTGA |