© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g3081.t1 |
| Gene name | |
| Location | scaffold_04:656236..657211 |
| Strand | - |
| Gene length (bp) | 975 |
| Transcript length (bp) | 546 |
| Coding sequence length (bp) | 546 |
| Protein length (aa) | 182 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03311 | Cornichon | Cornichon protein | 1.4E-49 | 49 | 169 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 24 | 43 | 19 |
| 2 | 50 | 72 | 22 |
| 3 | 101 | 123 | 22 |
| 4 | 154 | 176 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 310.75 | 190.69 | 430.80 |
| 5d_25C | Five days - 25 degrees Celsius | 315.77 | 193.94 | 437.61 |
| 7d_25C | Seven days - 25 degrees Celsius | 348.91 | 214.03 | 483.79 |
| 10d_25C | Ten days - 25 degrees Celsius | 422.49 | 259.00 | 585.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 295.83 | 181.85 | 409.81 |
| 7d_30C | Seven days - 30 degrees Celsius | 316.53 | 194.36 | 438.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.963681 | no |
| 3d_25C | 7d_25C | 0.674642 | no |
| 3d_25C | 7d_15C | 0.878221 | no |
| 3d_25C | 7d_30C | 0.959510 | no |
| 3d_25C | 10d_25C | 0.178570 | no |
| 5d_25C | 7d_25C | 0.718447 | no |
| 5d_25C | 7d_15C | 0.831730 | no |
| 5d_25C | 7d_30C | 0.994202 | no |
| 5d_25C | 10d_25C | 0.195729 | no |
| 7d_25C | 7d_15C | 0.517217 | no |
| 7d_25C | 7d_30C | 0.739723 | no |
| 7d_25C | 10d_25C | 0.437830 | no |
| 7d_15C | 7d_30C | 0.829757 | no |
| 7d_15C | 10d_25C | 0.104487 | no |
| 7d_30C | 10d_25C | 0.213066 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3081.t1 MTSPPDTADRSSLIETLSFDPTSSLLSTLFFISISLSAFSFVFPFKFSWLYLLSVLINAVNLFLQVFFTIMYSDL ECDYINPIDLCNRLNAYIIPEAAVHAFLTFLFVINGYWLAIVLNLPLVLFNAKKIYENQHLLDATEIFRKLNVHK KESFIKLGFHLLMFFFYLYSMIVALIRDEGN* |
| Coding | >Pro_DTO377G3_2|g3081.t1 ATGACCAGCCCTCCCGACACCGCCGACCGCAGTTCGCTAATCGAAACTCTTTCTTTCGATCCCACCTCATCTCTG CTCAGTACGTTGTTTTTCATCTCCATCAGCTTGAGTGCATTTAGCTTTGTTTTTCCATTCAAATTCTCATGGCTT TACCTGTTGTCGGTGTTGATCAACGCCGTCAACCTCTTCCTCCAGGTGTTCTTCACGATCATGTACAGTGATCTT GAATGCGATTACATCAACCCTATCGACCTTTGCAACCGCCTCAACGCCTACATCATCCCCGAAGCCGCTGTCCAC GCGTTCCTGACCTTCCTCTTCGTGATCAACGGATACTGGCTCGCCATCGTGCTGAACCTACCCCTCGTGTTGTTC AACGCCAAGAAGATCTACGAGAACCAGCACCTTTTGGATGCGACCGAGATTTTCCGCAAGTTGAACGTGCACAAG AAGGAATCCTTCATCAAGCTTGGCTTCCACCTTCTTATGTTCTTCTTCTATCTTTACAGCATGATTGTTGCCCTG ATCCGTGATGAGGGTAATTGA |
| Transcript | >Pro_DTO377G3_2|g3081.t1 ATGACCAGCCCTCCCGACACCGCCGACCGCAGTTCGCTAATCGAAACTCTTTCTTTCGATCCCACCTCATCTCTG CTCAGTACGTTGTTTTTCATCTCCATCAGCTTGAGTGCATTTAGCTTTGTTTTTCCATTCAAATTCTCATGGCTT TACCTGTTGTCGGTGTTGATCAACGCCGTCAACCTCTTCCTCCAGGTGTTCTTCACGATCATGTACAGTGATCTT GAATGCGATTACATCAACCCTATCGACCTTTGCAACCGCCTCAACGCCTACATCATCCCCGAAGCCGCTGTCCAC GCGTTCCTGACCTTCCTCTTCGTGATCAACGGATACTGGCTCGCCATCGTGCTGAACCTACCCCTCGTGTTGTTC AACGCCAAGAAGATCTACGAGAACCAGCACCTTTTGGATGCGACCGAGATTTTCCGCAAGTTGAACGTGCACAAG AAGGAATCCTTCATCAAGCTTGGCTTCCACCTTCTTATGTTCTTCTTCTATCTTTACAGCATGATTGTTGCCCTG ATCCGTGATGAGGGTAATTGA |
| Gene | >Pro_DTO377G3_2|g3081.t1 ATGACCAGCCCTCCCGACACCGCCGACCGCAGTTCGCTAATCGAAACTCTTTCTTTCGATCCCACCTCATCTCTG CTCAGTACGTTGTTTTTCATCTCCATCAGCTTGAGTGCATTTAGCTTTGTTTTTGTGAGTGAGCTTTGATCCCTC TTTGGAGAGGACTCTGTGCGATTCGTCTGTCTTCCTTGGGCGGAAGAACCCCACAAACATCTCCAATTCCGGCCT CTTCAATCCACCTCAACCTCACCCACTTTTGTCGCCGACAGTTTACTCATATCCTCTGTTTAGCCATTCAAATTC TGTCAATTATACTTGACGCAACGTCAAAATCGCAATGATGTCTGGCGAAGCATGGCTTTACCTGTTGTCGGTGTT GATCAACGCCGTCAACCTCTTCCTCCAGGTGTTCTTCACGATCATGTACAGTGATCTTGAATGGTGAGTCTTCGC AGTCGTCCCAAGCAACAGTTTTTGATCCACACATACTGCCGAATACAAGCTGACACTTCACCTTTTTTTCCCAGC GATTACATCAACCCTATCGACCTTTGCAACCGCCTCAACGCCTACATCATCCCCGAAGCCGCTGTCCACGCGTTC CTGACCTTCCTCTTCGTGATCAACGGATACTGGCTCGCCATCGTGCTGAACCTACCCCTCGTGTTGTTCAACGCC AAGAAGTACGTTGGAAGCTCCCCGAGTAGTCGCAAGCCCTCTTCAGCGGTAGGCTAACCGTGTCGTTTTTGAAAA TACAGGATCTACGAGAACCAGCACCTTTTGGATGCGACCGAGATTTTCCGCAAGTTGAACGTGCACAAGAAGGTA TGTTTGGTTTCTACCTCCCAATTTACCGCACAGTGACTGACTCGAAATCGTGTTTAGGAATCCTTCATCAAGCTT GGCTTCCACCTTCTTATGTTCTTCTTCTATCTTTACAGCATGATTGTTGCCCTGATCCGTGATGAGGGTAATTGA |