© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3081.t1 |
| Gene name | |
| Location | scaffold_04:656236..657211 |
| Strand | - |
| Gene length (bp) | 975 |
| Transcript length (bp) | 546 |
| Coding sequence length (bp) | 546 |
| Protein length (aa) | 182 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03311 | Cornichon | Cornichon protein | 1.4E-49 | 49 | 169 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 24 | 43 | 19 |
| 2 | 50 | 72 | 22 |
| 3 | 101 | 123 | 22 |
| 4 | 154 | 176 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3081.t1 MTSPPDTADRSSLIETLSFDPTSSLLSTLFFISISLSAFSFVFPFKFSWLYLLSVLINAVNLFLQVFFTIMYSDL ECDYINPIDLCNRLNAYIIPEAAVHAFLTFLFVINGYWLAIVLNLPLVLFNAKKIYENQHLLDATEIFRKLNVHK KESFIKLGFHLLMFFFYLYSMIVALIRDEGN* |
| Coding | >Pro_DTO377G3_2|g3081.t1 ATGACCAGCCCTCCCGACACCGCCGACCGCAGTTCGCTAATCGAAACTCTTTCTTTCGATCCCACCTCATCTCTG CTCAGTACGTTGTTTTTCATCTCCATCAGCTTGAGTGCATTTAGCTTTGTTTTTCCATTCAAATTCTCATGGCTT TACCTGTTGTCGGTGTTGATCAACGCCGTCAACCTCTTCCTCCAGGTGTTCTTCACGATCATGTACAGTGATCTT GAATGCGATTACATCAACCCTATCGACCTTTGCAACCGCCTCAACGCCTACATCATCCCCGAAGCCGCTGTCCAC GCGTTCCTGACCTTCCTCTTCGTGATCAACGGATACTGGCTCGCCATCGTGCTGAACCTACCCCTCGTGTTGTTC AACGCCAAGAAGATCTACGAGAACCAGCACCTTTTGGATGCGACCGAGATTTTCCGCAAGTTGAACGTGCACAAG AAGGAATCCTTCATCAAGCTTGGCTTCCACCTTCTTATGTTCTTCTTCTATCTTTACAGCATGATTGTTGCCCTG ATCCGTGATGAGGGTAATTGA |
| Transcript | >Pro_DTO377G3_2|g3081.t1 ATGACCAGCCCTCCCGACACCGCCGACCGCAGTTCGCTAATCGAAACTCTTTCTTTCGATCCCACCTCATCTCTG CTCAGTACGTTGTTTTTCATCTCCATCAGCTTGAGTGCATTTAGCTTTGTTTTTCCATTCAAATTCTCATGGCTT TACCTGTTGTCGGTGTTGATCAACGCCGTCAACCTCTTCCTCCAGGTGTTCTTCACGATCATGTACAGTGATCTT GAATGCGATTACATCAACCCTATCGACCTTTGCAACCGCCTCAACGCCTACATCATCCCCGAAGCCGCTGTCCAC GCGTTCCTGACCTTCCTCTTCGTGATCAACGGATACTGGCTCGCCATCGTGCTGAACCTACCCCTCGTGTTGTTC AACGCCAAGAAGATCTACGAGAACCAGCACCTTTTGGATGCGACCGAGATTTTCCGCAAGTTGAACGTGCACAAG AAGGAATCCTTCATCAAGCTTGGCTTCCACCTTCTTATGTTCTTCTTCTATCTTTACAGCATGATTGTTGCCCTG ATCCGTGATGAGGGTAATTGA |
| Gene | >Pro_DTO377G3_2|g3081.t1 ATGACCAGCCCTCCCGACACCGCCGACCGCAGTTCGCTAATCGAAACTCTTTCTTTCGATCCCACCTCATCTCTG CTCAGTACGTTGTTTTTCATCTCCATCAGCTTGAGTGCATTTAGCTTTGTTTTTGTGAGTGAGCTTTGATCCCTC TTTGGAGAGGACTCTGTGCGATTCGTCTGTCTTCCTTGGGCGGAAGAACCCCACAAACATCTCCAATTCCGGCCT CTTCAATCCACCTCAACCTCACCCACTTTTGTCGCCGACAGTTTACTCATATCCTCTGTTTAGCCATTCAAATTC TGTCAATTATACTTGACGCAACGTCAAAATCGCAATGATGTCTGGCGAAGCATGGCTTTACCTGTTGTCGGTGTT GATCAACGCCGTCAACCTCTTCCTCCAGGTGTTCTTCACGATCATGTACAGTGATCTTGAATGGTGAGTCTTCGC AGTCGTCCCAAGCAACAGTTTTTGATCCACACATACTGCCGAATACAAGCTGACACTTCACCTTTTTTTCCCAGC GATTACATCAACCCTATCGACCTTTGCAACCGCCTCAACGCCTACATCATCCCCGAAGCCGCTGTCCACGCGTTC CTGACCTTCCTCTTCGTGATCAACGGATACTGGCTCGCCATCGTGCTGAACCTACCCCTCGTGTTGTTCAACGCC AAGAAGTACGTTGGAAGCTCCCCGAGTAGTCGCAAGCCCTCTTCAGCGGTAGGCTAACCGTGTCGTTTTTGAAAA TACAGGATCTACGAGAACCAGCACCTTTTGGATGCGACCGAGATTTTCCGCAAGTTGAACGTGCACAAGAAGGTA TGTTTGGTTTCTACCTCCCAATTTACCGCACAGTGACTGACTCGAAATCGTGTTTAGGAATCCTTCATCAAGCTT GGCTTCCACCTTCTTATGTTCTTCTTCTATCTTTACAGCATGATTGTTGCCCTGATCCGTGATGAGGGTAATTGA |