Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g3080.t1
Gene name
Locationscaffold_04:653606..655449
Strand-
Gene length (bp)1843
Transcript length (bp)1752
Coding sequence length (bp)1752
Protein length (aa) 584

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00400 WD40 WD domain, G-beta repeat 6.3E-04 280 318
PF00400 WD40 WD domain, G-beta repeat 3.2E-08 324 361
PF00400 WD40 WD domain, G-beta repeat 9.1E-02 409 446
PF00400 WD40 WD domain, G-beta repeat 1.1E-03 502 537
PF00400 WD40 WD domain, G-beta repeat 4.9E-03 555 583
PF12894 ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 1.5E-05 495 563

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 59.94 36.42 83.47
5d_25C Five days - 25 degrees Celsius 61.12 37.42 84.83
7d_25C Seven days - 25 degrees Celsius 61.54 37.41 85.67
10d_25C Ten days - 25 degrees Celsius 66.00 40.02 91.98
7d_15C Seven days - 15 degrees Celsius 71.35 43.34 99.36
7d_30C Seven days - 30 degrees Celsius 59.91 36.43 83.39

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.956470 no
3d_25C 7d_25C 0.938042 no
3d_25C 7d_15C 0.494862 no
3d_25C 7d_30C 0.998471 no
3d_25C 10d_25C 0.744517 no
5d_25C 7d_25C 0.985492 no
5d_25C 7d_15C 0.546502 no
5d_25C 7d_30C 0.953857 no
5d_25C 10d_25C 0.801061 no
7d_25C 7d_15C 0.580368 no
7d_25C 7d_30C 0.938811 no
7d_25C 10d_25C 0.825456 no
7d_15C 7d_30C 0.499832 no
7d_15C 10d_25C 0.800847 no
7d_30C 10d_25C 0.744139 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g3080.t1
MSALLGLGYDSSDDDDATAMPSSVTTATKVVAAPEVNTEDQAHMQMALANASSQALTYNATYDDLTKPSQGPVNP
FKPAGPGNGIKRKNVPTGFAEEAAISESTFSAQHRTFQSLGYTRNPTLPDQFIGSLENAAQYGGRDIVQIKPTKS
ASANWRTKRQKKGDSSVVEGEGAYLGPWAKYQNDQQYDYVEVAEGEERALGSDEEYIEEEDETLTTTAPMPAMSK
DATAYEGDLATQETTEFHGSEQYDYQGRTYMHVPQDLDIDLRKEPGTTKNYVPKKLVQTWKSHTKPITSLRFIPK
SGHLLLSSAADGKAKLWDVYHSRELLRTFSGHTKAISDTDFHPSGTTFLTGSYDRQIKLWDTEYGKCLGRFSTGK
TPHVVRFNPSPEHSHEFLAGMSDKKIVQFDTRSGELVQEYDHHLAAVNTLTFVDDNRRFISTSDDKSLRAWEYGI
PVPIKFIAEPYMFALTRAAPHPNGKYVAFQSGDNQIVVYSATDKFRQNRKKRFVGHNTSGYAIDLKISPDGQFLV
SGDSGGYVCFWDWKTGKMYHKIQAGGKEGGAITCVDWHPHESSKVVTGGLDGVIRYWD*
Coding >Pro_DTO377G3_2|g3080.t1
ATGTCCGCCTTACTAGGTCTTGGTTATGACTCCAGCGATGATGATGACGCCACAGCTATGCCCTCGTCTGTGACG
ACCGCGACCAAGGTCGTTGCTGCACCAGAGGTCAATACAGAGGACCAAGCGCATATGCAGATGGCCCTCGCCAAC
GCCTCATCCCAAGCCCTCACCTACAATGCCACATACGATGATCTTACAAAGCCTTCCCAGGGCCCTGTGAACCCG
TTCAAGCCAGCAGGTCCGGGAAACGGTATCAAAAGAAAGAATGTTCCGACTGGATTTGCTGAAGAAGCAGCCATC
AGCGAGTCCACATTTTCTGCGCAACATCGCACGTTCCAAAGTCTGGGATACACTCGCAATCCGACACTACCGGAC
CAATTTATCGGAAGCCTCGAAAATGCGGCACAATATGGAGGCCGGGATATTGTACAAATTAAGCCGACTAAGAGC
GCGTCCGCAAACTGGCGGACAAAGCGGCAAAAGAAGGGCGACTCCAGTGTTGTGGAGGGAGAGGGCGCATATCTG
GGACCCTGGGCGAAATACCAAAATGACCAGCAATATGACTACGTGGAGGTTGCTGAAGGAGAAGAGCGCGCGCTT
GGTAGTGACGAGGAATATATCGAAGAGGAAGACGAGACTCTGACTACCACGGCACCTATGCCGGCCATGAGTAAG
GATGCCACCGCTTACGAAGGTGATCTTGCCACGCAAGAAACCACCGAGTTTCACGGATCAGAGCAGTACGACTAC
CAGGGCCGGACGTACATGCACGTGCCTCAGGACTTGGATATCGATTTGCGCAAAGAGCCCGGCACCACCAAGAAC
TACGTACCCAAAAAACTCGTGCAAACTTGGAAATCGCACACCAAGCCGATCACCTCTCTTCGATTCATCCCCAAA
TCTGGCCACTTGCTGCTTTCATCAGCAGCCGATGGGAAAGCCAAGCTCTGGGATGTGTATCACTCTCGGGAACTC
TTGCGGACTTTCTCCGGCCACACCAAAGCAATCTCAGACACAGATTTCCATCCATCGGGGACGACCTTCCTTACC
GGGTCATACGACCGACAGATCAAGCTCTGGGATACCGAATACGGTAAATGTCTTGGCCGGTTTTCCACAGGCAAG
ACACCGCACGTTGTCCGCTTCAACCCTAGCCCAGAACACTCACACGAGTTCCTGGCCGGTATGTCTGACAAGAAG
ATTGTGCAATTCGACACCCGGTCCGGCGAGTTGGTCCAAGAGTATGACCACCATCTGGCTGCCGTCAACACTCTT
ACTTTCGTTGATGACAACCGCCGCTTCATCTCCACCTCAGATGACAAGTCGCTGCGCGCTTGGGAATACGGCATT
CCTGTCCCGATTAAGTTCATCGCAGAGCCCTACATGTTCGCGCTCACGCGTGCGGCGCCCCATCCGAATGGCAAG
TATGTCGCCTTCCAGTCAGGCGACAACCAGATTGTCGTCTACAGCGCGACGGACAAGTTCCGCCAGAACCGAAAG
AAGCGCTTCGTTGGGCATAATACTTCCGGATACGCTATCGACCTCAAGATCTCACCTGATGGTCAGTTCCTTGTT
TCCGGTGACAGCGGTGGTTATGTCTGCTTCTGGGACTGGAAGACCGGCAAGATGTATCATAAGATCCAGGCTGGT
GGAAAGGAAGGTGGGGCTATTACTTGTGTGGACTGGCATCCCCATGAGTCCAGTAAGGTCGTCACTGGTGGATTG
GACGGTGTTATCAGGTATTGGGATTAA
Transcript >Pro_DTO377G3_2|g3080.t1
ATGTCCGCCTTACTAGGTCTTGGTTATGACTCCAGCGATGATGATGACGCCACAGCTATGCCCTCGTCTGTGACG
ACCGCGACCAAGGTCGTTGCTGCACCAGAGGTCAATACAGAGGACCAAGCGCATATGCAGATGGCCCTCGCCAAC
GCCTCATCCCAAGCCCTCACCTACAATGCCACATACGATGATCTTACAAAGCCTTCCCAGGGCCCTGTGAACCCG
TTCAAGCCAGCAGGTCCGGGAAACGGTATCAAAAGAAAGAATGTTCCGACTGGATTTGCTGAAGAAGCAGCCATC
AGCGAGTCCACATTTTCTGCGCAACATCGCACGTTCCAAAGTCTGGGATACACTCGCAATCCGACACTACCGGAC
CAATTTATCGGAAGCCTCGAAAATGCGGCACAATATGGAGGCCGGGATATTGTACAAATTAAGCCGACTAAGAGC
GCGTCCGCAAACTGGCGGACAAAGCGGCAAAAGAAGGGCGACTCCAGTGTTGTGGAGGGAGAGGGCGCATATCTG
GGACCCTGGGCGAAATACCAAAATGACCAGCAATATGACTACGTGGAGGTTGCTGAAGGAGAAGAGCGCGCGCTT
GGTAGTGACGAGGAATATATCGAAGAGGAAGACGAGACTCTGACTACCACGGCACCTATGCCGGCCATGAGTAAG
GATGCCACCGCTTACGAAGGTGATCTTGCCACGCAAGAAACCACCGAGTTTCACGGATCAGAGCAGTACGACTAC
CAGGGCCGGACGTACATGCACGTGCCTCAGGACTTGGATATCGATTTGCGCAAAGAGCCCGGCACCACCAAGAAC
TACGTACCCAAAAAACTCGTGCAAACTTGGAAATCGCACACCAAGCCGATCACCTCTCTTCGATTCATCCCCAAA
TCTGGCCACTTGCTGCTTTCATCAGCAGCCGATGGGAAAGCCAAGCTCTGGGATGTGTATCACTCTCGGGAACTC
TTGCGGACTTTCTCCGGCCACACCAAAGCAATCTCAGACACAGATTTCCATCCATCGGGGACGACCTTCCTTACC
GGGTCATACGACCGACAGATCAAGCTCTGGGATACCGAATACGGTAAATGTCTTGGCCGGTTTTCCACAGGCAAG
ACACCGCACGTTGTCCGCTTCAACCCTAGCCCAGAACACTCACACGAGTTCCTGGCCGGTATGTCTGACAAGAAG
ATTGTGCAATTCGACACCCGGTCCGGCGAGTTGGTCCAAGAGTATGACCACCATCTGGCTGCCGTCAACACTCTT
ACTTTCGTTGATGACAACCGCCGCTTCATCTCCACCTCAGATGACAAGTCGCTGCGCGCTTGGGAATACGGCATT
CCTGTCCCGATTAAGTTCATCGCAGAGCCCTACATGTTCGCGCTCACGCGTGCGGCGCCCCATCCGAATGGCAAG
TATGTCGCCTTCCAGTCAGGCGACAACCAGATTGTCGTCTACAGCGCGACGGACAAGTTCCGCCAGAACCGAAAG
AAGCGCTTCGTTGGGCATAATACTTCCGGATACGCTATCGACCTCAAGATCTCACCTGATGGTCAGTTCCTTGTT
TCCGGTGACAGCGGTGGTTATGTCTGCTTCTGGGACTGGAAGACCGGCAAGATGTATCATAAGATCCAGGCTGGT
GGAAAGGAAGGTGGGGCTATTACTTGTGTGGACTGGCATCCCCATGAGTCCAGTAAGGTCGTCACTGGTGGATTG
GACGGTGTTATCAGGTATTGGGATTAA
Gene >Pro_DTO377G3_2|g3080.t1
ATGTCCGCCTTACTAGGTCTTGGTTATGACTCCAGCGATGATGATGACGCCACAGCTATGCCCTCGTCTGTGACG
ACCGCGACCAAGGTCGTTGCTGCACCAGAGGTCAATACAGAGGTTTGGTCCCCCCATAATCATCCTCCTTCCCGA
ATCTCTTTGTGCCTTACACTTGAGCTATGACGAACAGATAAGACTAACGATCCTACAGGACCAAGCGCATATGCA
GATGGCCCTCGCCAACGCCTCATCCCAAGCCCTCACCTACAATGCCACATACGATGATCTTACAAAGCCTTCCCA
GGGCCCTGTGAACCCGTTCAAGCCAGCAGGTCCGGGAAACGGTATCAAAAGAAAGAATGTTCCGACTGGATTTGC
TGAAGAAGCAGCCATCAGCGAGTCCACATTTTCTGCGCAACATCGCACGTTCCAAAGTCTGGGATACACTCGCAA
TCCGACACTACCGGACCAATTTATCGGAAGCCTCGAAAATGCGGCACAATATGGAGGCCGGGATATTGTACAAAT
TAAGCCGACTAAGAGCGCGTCCGCAAACTGGCGGACAAAGCGGCAAAAGAAGGGCGACTCCAGTGTTGTGGAGGG
AGAGGGCGCATATCTGGGACCCTGGGCGAAATACCAAAATGACCAGCAATATGACTACGTGGAGGTTGCTGAAGG
AGAAGAGCGCGCGCTTGGTAGTGACGAGGAATATATCGAAGAGGAAGACGAGACTCTGACTACCACGGCACCTAT
GCCGGCCATGAGTAAGGATGCCACCGCTTACGAAGGTGATCTTGCCACGCAAGAAACCACCGAGTTTCACGGATC
AGAGCAGTACGACTACCAGGGCCGGACGTACATGCACGTGCCTCAGGACTTGGATATCGATTTGCGCAAAGAGCC
CGGCACCACCAAGAACTACGTACCCAAAAAACTCGTGCAAACTTGGAAATCGCACACCAAGCCGATCACCTCTCT
TCGATTCATCCCCAAATCTGGCCACTTGCTGCTTTCATCAGCAGCCGATGGGAAAGCCAAGCTCTGGGATGTGTA
TCACTCTCGGGAACTCTTGCGGACTTTCTCCGGCCACACCAAAGCAATCTCAGACACAGATTTCCATCCATCGGG
GACGACCTTCCTTACCGGGTCATACGACCGACAGATCAAGCTCTGGGATACCGAATACGGTAAATGTCTTGGCCG
GTTTTCCACAGGCAAGACACCGCACGTTGTCCGCTTCAACCCTAGCCCAGAACACTCACACGAGTTCCTGGCCGG
TATGTCTGACAAGAAGATTGTGCAATTCGACACCCGGTCCGGCGAGTTGGTCCAAGAGTATGACCACCATCTGGC
TGCCGTCAACACTCTTACTTTCGTTGATGACAACCGCCGCTTCATCTCCACCTCAGATGACAAGTCGCTGCGCGC
TTGGGAATACGGCATTCCTGTCCCGATTAAGTTCATCGCAGAGCCCTACATGTTCGCGCTCACGCGTGCGGCGCC
CCATCCGAATGGCAAGTATGTCGCCTTCCAGTCAGGCGACAACCAGATTGTCGTCTACAGCGCGACGGACAAGTT
CCGCCAGAACCGAAAGAAGCGCTTCGTTGGGCATAATACTTCCGGATACGCTATCGACCTCAAGATCTCACCTGA
TGGTCAGTTCCTTGTTTCCGGTGACAGCGGTGGTTATGTCTGCTTCTGGGACTGGAAGACCGGCAAGATGTATCA
TAAGATCCAGGCTGGTGGAAAGGAAGGTGGGGCTATTACTTGTGTGGACTGGCATCCCCATGAGTCCAGTAAGGT
CGTCACTGGTGGATTGGACGGTGTTATCAGGTATTGGGATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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