© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3080.t1 |
| Gene name | |
| Location | scaffold_04:653606..655449 |
| Strand | - |
| Gene length (bp) | 1843 |
| Transcript length (bp) | 1752 |
| Coding sequence length (bp) | 1752 |
| Protein length (aa) | 584 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | 6.3E-04 | 280 | 318 |
| PF00400 | WD40 | WD domain, G-beta repeat | 3.2E-08 | 324 | 361 |
| PF00400 | WD40 | WD domain, G-beta repeat | 9.1E-02 | 409 | 446 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.1E-03 | 502 | 537 |
| PF00400 | WD40 | WD domain, G-beta repeat | 4.9E-03 | 555 | 583 |
| PF12894 | ANAPC4_WD40 | Anaphase-promoting complex subunit 4 WD40 domain | 1.5E-05 | 495 | 563 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 59.94 | 36.42 | 83.47 |
| 5d_25C | Five days - 25 degrees Celsius | 61.12 | 37.42 | 84.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 61.54 | 37.41 | 85.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 66.00 | 40.02 | 91.98 |
| 7d_15C | Seven days - 15 degrees Celsius | 71.35 | 43.34 | 99.36 |
| 7d_30C | Seven days - 30 degrees Celsius | 59.91 | 36.43 | 83.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.956470 | no |
| 3d_25C | 7d_25C | 0.938042 | no |
| 3d_25C | 7d_15C | 0.494862 | no |
| 3d_25C | 7d_30C | 0.998471 | no |
| 3d_25C | 10d_25C | 0.744517 | no |
| 5d_25C | 7d_25C | 0.985492 | no |
| 5d_25C | 7d_15C | 0.546502 | no |
| 5d_25C | 7d_30C | 0.953857 | no |
| 5d_25C | 10d_25C | 0.801061 | no |
| 7d_25C | 7d_15C | 0.580368 | no |
| 7d_25C | 7d_30C | 0.938811 | no |
| 7d_25C | 10d_25C | 0.825456 | no |
| 7d_15C | 7d_30C | 0.499832 | no |
| 7d_15C | 10d_25C | 0.800847 | no |
| 7d_30C | 10d_25C | 0.744139 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3080.t1 MSALLGLGYDSSDDDDATAMPSSVTTATKVVAAPEVNTEDQAHMQMALANASSQALTYNATYDDLTKPSQGPVNP FKPAGPGNGIKRKNVPTGFAEEAAISESTFSAQHRTFQSLGYTRNPTLPDQFIGSLENAAQYGGRDIVQIKPTKS ASANWRTKRQKKGDSSVVEGEGAYLGPWAKYQNDQQYDYVEVAEGEERALGSDEEYIEEEDETLTTTAPMPAMSK DATAYEGDLATQETTEFHGSEQYDYQGRTYMHVPQDLDIDLRKEPGTTKNYVPKKLVQTWKSHTKPITSLRFIPK SGHLLLSSAADGKAKLWDVYHSRELLRTFSGHTKAISDTDFHPSGTTFLTGSYDRQIKLWDTEYGKCLGRFSTGK TPHVVRFNPSPEHSHEFLAGMSDKKIVQFDTRSGELVQEYDHHLAAVNTLTFVDDNRRFISTSDDKSLRAWEYGI PVPIKFIAEPYMFALTRAAPHPNGKYVAFQSGDNQIVVYSATDKFRQNRKKRFVGHNTSGYAIDLKISPDGQFLV SGDSGGYVCFWDWKTGKMYHKIQAGGKEGGAITCVDWHPHESSKVVTGGLDGVIRYWD* |
| Coding | >Pro_DTO377G3_2|g3080.t1 ATGTCCGCCTTACTAGGTCTTGGTTATGACTCCAGCGATGATGATGACGCCACAGCTATGCCCTCGTCTGTGACG ACCGCGACCAAGGTCGTTGCTGCACCAGAGGTCAATACAGAGGACCAAGCGCATATGCAGATGGCCCTCGCCAAC GCCTCATCCCAAGCCCTCACCTACAATGCCACATACGATGATCTTACAAAGCCTTCCCAGGGCCCTGTGAACCCG TTCAAGCCAGCAGGTCCGGGAAACGGTATCAAAAGAAAGAATGTTCCGACTGGATTTGCTGAAGAAGCAGCCATC AGCGAGTCCACATTTTCTGCGCAACATCGCACGTTCCAAAGTCTGGGATACACTCGCAATCCGACACTACCGGAC CAATTTATCGGAAGCCTCGAAAATGCGGCACAATATGGAGGCCGGGATATTGTACAAATTAAGCCGACTAAGAGC GCGTCCGCAAACTGGCGGACAAAGCGGCAAAAGAAGGGCGACTCCAGTGTTGTGGAGGGAGAGGGCGCATATCTG GGACCCTGGGCGAAATACCAAAATGACCAGCAATATGACTACGTGGAGGTTGCTGAAGGAGAAGAGCGCGCGCTT GGTAGTGACGAGGAATATATCGAAGAGGAAGACGAGACTCTGACTACCACGGCACCTATGCCGGCCATGAGTAAG GATGCCACCGCTTACGAAGGTGATCTTGCCACGCAAGAAACCACCGAGTTTCACGGATCAGAGCAGTACGACTAC CAGGGCCGGACGTACATGCACGTGCCTCAGGACTTGGATATCGATTTGCGCAAAGAGCCCGGCACCACCAAGAAC TACGTACCCAAAAAACTCGTGCAAACTTGGAAATCGCACACCAAGCCGATCACCTCTCTTCGATTCATCCCCAAA TCTGGCCACTTGCTGCTTTCATCAGCAGCCGATGGGAAAGCCAAGCTCTGGGATGTGTATCACTCTCGGGAACTC TTGCGGACTTTCTCCGGCCACACCAAAGCAATCTCAGACACAGATTTCCATCCATCGGGGACGACCTTCCTTACC GGGTCATACGACCGACAGATCAAGCTCTGGGATACCGAATACGGTAAATGTCTTGGCCGGTTTTCCACAGGCAAG ACACCGCACGTTGTCCGCTTCAACCCTAGCCCAGAACACTCACACGAGTTCCTGGCCGGTATGTCTGACAAGAAG ATTGTGCAATTCGACACCCGGTCCGGCGAGTTGGTCCAAGAGTATGACCACCATCTGGCTGCCGTCAACACTCTT ACTTTCGTTGATGACAACCGCCGCTTCATCTCCACCTCAGATGACAAGTCGCTGCGCGCTTGGGAATACGGCATT CCTGTCCCGATTAAGTTCATCGCAGAGCCCTACATGTTCGCGCTCACGCGTGCGGCGCCCCATCCGAATGGCAAG TATGTCGCCTTCCAGTCAGGCGACAACCAGATTGTCGTCTACAGCGCGACGGACAAGTTCCGCCAGAACCGAAAG AAGCGCTTCGTTGGGCATAATACTTCCGGATACGCTATCGACCTCAAGATCTCACCTGATGGTCAGTTCCTTGTT TCCGGTGACAGCGGTGGTTATGTCTGCTTCTGGGACTGGAAGACCGGCAAGATGTATCATAAGATCCAGGCTGGT GGAAAGGAAGGTGGGGCTATTACTTGTGTGGACTGGCATCCCCATGAGTCCAGTAAGGTCGTCACTGGTGGATTG GACGGTGTTATCAGGTATTGGGATTAA |
| Transcript | >Pro_DTO377G3_2|g3080.t1 ATGTCCGCCTTACTAGGTCTTGGTTATGACTCCAGCGATGATGATGACGCCACAGCTATGCCCTCGTCTGTGACG ACCGCGACCAAGGTCGTTGCTGCACCAGAGGTCAATACAGAGGACCAAGCGCATATGCAGATGGCCCTCGCCAAC GCCTCATCCCAAGCCCTCACCTACAATGCCACATACGATGATCTTACAAAGCCTTCCCAGGGCCCTGTGAACCCG TTCAAGCCAGCAGGTCCGGGAAACGGTATCAAAAGAAAGAATGTTCCGACTGGATTTGCTGAAGAAGCAGCCATC AGCGAGTCCACATTTTCTGCGCAACATCGCACGTTCCAAAGTCTGGGATACACTCGCAATCCGACACTACCGGAC CAATTTATCGGAAGCCTCGAAAATGCGGCACAATATGGAGGCCGGGATATTGTACAAATTAAGCCGACTAAGAGC GCGTCCGCAAACTGGCGGACAAAGCGGCAAAAGAAGGGCGACTCCAGTGTTGTGGAGGGAGAGGGCGCATATCTG GGACCCTGGGCGAAATACCAAAATGACCAGCAATATGACTACGTGGAGGTTGCTGAAGGAGAAGAGCGCGCGCTT GGTAGTGACGAGGAATATATCGAAGAGGAAGACGAGACTCTGACTACCACGGCACCTATGCCGGCCATGAGTAAG GATGCCACCGCTTACGAAGGTGATCTTGCCACGCAAGAAACCACCGAGTTTCACGGATCAGAGCAGTACGACTAC CAGGGCCGGACGTACATGCACGTGCCTCAGGACTTGGATATCGATTTGCGCAAAGAGCCCGGCACCACCAAGAAC TACGTACCCAAAAAACTCGTGCAAACTTGGAAATCGCACACCAAGCCGATCACCTCTCTTCGATTCATCCCCAAA TCTGGCCACTTGCTGCTTTCATCAGCAGCCGATGGGAAAGCCAAGCTCTGGGATGTGTATCACTCTCGGGAACTC TTGCGGACTTTCTCCGGCCACACCAAAGCAATCTCAGACACAGATTTCCATCCATCGGGGACGACCTTCCTTACC GGGTCATACGACCGACAGATCAAGCTCTGGGATACCGAATACGGTAAATGTCTTGGCCGGTTTTCCACAGGCAAG ACACCGCACGTTGTCCGCTTCAACCCTAGCCCAGAACACTCACACGAGTTCCTGGCCGGTATGTCTGACAAGAAG ATTGTGCAATTCGACACCCGGTCCGGCGAGTTGGTCCAAGAGTATGACCACCATCTGGCTGCCGTCAACACTCTT ACTTTCGTTGATGACAACCGCCGCTTCATCTCCACCTCAGATGACAAGTCGCTGCGCGCTTGGGAATACGGCATT CCTGTCCCGATTAAGTTCATCGCAGAGCCCTACATGTTCGCGCTCACGCGTGCGGCGCCCCATCCGAATGGCAAG TATGTCGCCTTCCAGTCAGGCGACAACCAGATTGTCGTCTACAGCGCGACGGACAAGTTCCGCCAGAACCGAAAG AAGCGCTTCGTTGGGCATAATACTTCCGGATACGCTATCGACCTCAAGATCTCACCTGATGGTCAGTTCCTTGTT TCCGGTGACAGCGGTGGTTATGTCTGCTTCTGGGACTGGAAGACCGGCAAGATGTATCATAAGATCCAGGCTGGT GGAAAGGAAGGTGGGGCTATTACTTGTGTGGACTGGCATCCCCATGAGTCCAGTAAGGTCGTCACTGGTGGATTG GACGGTGTTATCAGGTATTGGGATTAA |
| Gene | >Pro_DTO377G3_2|g3080.t1 ATGTCCGCCTTACTAGGTCTTGGTTATGACTCCAGCGATGATGATGACGCCACAGCTATGCCCTCGTCTGTGACG ACCGCGACCAAGGTCGTTGCTGCACCAGAGGTCAATACAGAGGTTTGGTCCCCCCATAATCATCCTCCTTCCCGA ATCTCTTTGTGCCTTACACTTGAGCTATGACGAACAGATAAGACTAACGATCCTACAGGACCAAGCGCATATGCA GATGGCCCTCGCCAACGCCTCATCCCAAGCCCTCACCTACAATGCCACATACGATGATCTTACAAAGCCTTCCCA GGGCCCTGTGAACCCGTTCAAGCCAGCAGGTCCGGGAAACGGTATCAAAAGAAAGAATGTTCCGACTGGATTTGC TGAAGAAGCAGCCATCAGCGAGTCCACATTTTCTGCGCAACATCGCACGTTCCAAAGTCTGGGATACACTCGCAA TCCGACACTACCGGACCAATTTATCGGAAGCCTCGAAAATGCGGCACAATATGGAGGCCGGGATATTGTACAAAT TAAGCCGACTAAGAGCGCGTCCGCAAACTGGCGGACAAAGCGGCAAAAGAAGGGCGACTCCAGTGTTGTGGAGGG AGAGGGCGCATATCTGGGACCCTGGGCGAAATACCAAAATGACCAGCAATATGACTACGTGGAGGTTGCTGAAGG AGAAGAGCGCGCGCTTGGTAGTGACGAGGAATATATCGAAGAGGAAGACGAGACTCTGACTACCACGGCACCTAT GCCGGCCATGAGTAAGGATGCCACCGCTTACGAAGGTGATCTTGCCACGCAAGAAACCACCGAGTTTCACGGATC AGAGCAGTACGACTACCAGGGCCGGACGTACATGCACGTGCCTCAGGACTTGGATATCGATTTGCGCAAAGAGCC CGGCACCACCAAGAACTACGTACCCAAAAAACTCGTGCAAACTTGGAAATCGCACACCAAGCCGATCACCTCTCT TCGATTCATCCCCAAATCTGGCCACTTGCTGCTTTCATCAGCAGCCGATGGGAAAGCCAAGCTCTGGGATGTGTA TCACTCTCGGGAACTCTTGCGGACTTTCTCCGGCCACACCAAAGCAATCTCAGACACAGATTTCCATCCATCGGG GACGACCTTCCTTACCGGGTCATACGACCGACAGATCAAGCTCTGGGATACCGAATACGGTAAATGTCTTGGCCG GTTTTCCACAGGCAAGACACCGCACGTTGTCCGCTTCAACCCTAGCCCAGAACACTCACACGAGTTCCTGGCCGG TATGTCTGACAAGAAGATTGTGCAATTCGACACCCGGTCCGGCGAGTTGGTCCAAGAGTATGACCACCATCTGGC TGCCGTCAACACTCTTACTTTCGTTGATGACAACCGCCGCTTCATCTCCACCTCAGATGACAAGTCGCTGCGCGC TTGGGAATACGGCATTCCTGTCCCGATTAAGTTCATCGCAGAGCCCTACATGTTCGCGCTCACGCGTGCGGCGCC CCATCCGAATGGCAAGTATGTCGCCTTCCAGTCAGGCGACAACCAGATTGTCGTCTACAGCGCGACGGACAAGTT CCGCCAGAACCGAAAGAAGCGCTTCGTTGGGCATAATACTTCCGGATACGCTATCGACCTCAAGATCTCACCTGA TGGTCAGTTCCTTGTTTCCGGTGACAGCGGTGGTTATGTCTGCTTCTGGGACTGGAAGACCGGCAAGATGTATCA TAAGATCCAGGCTGGTGGAAAGGAAGGTGGGGCTATTACTTGTGTGGACTGGCATCCCCATGAGTCCAGTAAGGT CGTCACTGGTGGATTGGACGGTGTTATCAGGTATTGGGATTAA |