© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3072.t1 |
| Gene name | |
| Location | scaffold_04:632943..634148 |
| Strand | + |
| Gene length (bp) | 1205 |
| Transcript length (bp) | 1068 |
| Coding sequence length (bp) | 1068 |
| Protein length (aa) | 356 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 1.0E-49 | 9 | 273 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 4.3E-38 | 8 | 236 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 1.6E-18 | 9 | 338 |
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 8.6E-15 | 7 | 268 |
| PF07993 | NAD_binding_4 | Male sterility protein | 6.3E-09 | 74 | 226 |
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 7.4E-12 | 12 | 184 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 7.4E-08 | 8 | 127 |
| PF08659 | KR | KR domain | 6.2E-07 | 8 | 134 |
| PF02254 | TrkA_N | TrkA-N domain | 4.4E-06 | 13 | 80 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0006813 | potassium ion transport | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0051234 | establishment of localization | No |
| GO:0008152 | metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0051179 | localization | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0030001 | metal ion transport | No |
| Orthofinder run ID | 2 |
| Orthogroup | 2338 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3072.t1 MTDTARKVLISGGTGFVGSAVVRALAEKYPNFIIAVIDQNPPRAEHVLPEITTWIQVDITSTETLSKAFEAVKPD IVIHTAGVVPDLAERFGRRLEQEVWKINFEGTRNILDISKHSGVEVFIYTSSCCVVIDDTRTAHPNINEEWPSAF RSTIYGESKAAAEALVLNASSSKMVTCALRPSVLCGPGDYQLLPAIHACIAKYETPFLIGDGFNLWDITHVDNAA DAHILAIENLLSSRTAAGEAFFIQNNEPIAFRDFCLAIWAHFGHVPPFQMHIPKSLAYFTGLVCETVTWLTGTTT TLSRGSVQDACAIRYASGNKAKEILGYEARIGIEEAIRLSCEDYASRLGFELPPQ* |
| Coding | >Pro_DTO377G3_2|g3072.t1 ATGACTGACACAGCGAGGAAAGTCCTGATATCTGGTGGCACGGGTTTTGTAGGCTCGGCCGTGGTACGGGCTCTT GCAGAAAAATACCCAAACTTTATCATCGCCGTCATCGACCAAAACCCTCCACGAGCCGAGCACGTCCTGCCAGAA ATAACTACGTGGATTCAGGTGGATATTACTTCAACTGAAACATTGAGCAAAGCATTTGAGGCTGTGAAGCCAGAT ATCGTTATCCACACTGCTGGAGTCGTCCCAGATCTGGCCGAACGGTTTGGTCGCCGACTAGAACAGGAGGTATGG AAGATCAACTTTGAAGGCACACGGAATATTCTGGATATATCCAAGCACAGCGGGGTTGAAGTATTCATATACACG AGCAGTTGCTGTGTGGTGATCGACGATACGCGTACCGCTCATCCTAACATCAATGAAGAATGGCCCTCGGCATTT AGGTCAACCATTTATGGAGAGTCCAAGGCTGCTGCAGAAGCACTCGTTCTAAATGCCTCAAGCAGTAAAATGGTG ACATGTGCCCTCCGGCCATCGGTACTATGCGGACCAGGAGACTACCAGCTATTACCAGCTATTCACGCATGTATC GCCAAATACGAAACCCCTTTTTTGATCGGAGATGGCTTCAACCTATGGGATATCACCCATGTCGACAATGCCGCC GATGCTCATATCCTAGCCATAGAGAATCTGCTATCATCTCGCACGGCTGCAGGCGAGGCATTTTTCATTCAGAAT AACGAACCTATCGCCTTTCGTGATTTTTGTCTGGCAATTTGGGCGCATTTTGGGCATGTCCCTCCTTTTCAAATG CATATCCCTAAGAGTCTGGCTTACTTCACCGGGTTGGTGTGTGAGACTGTCACCTGGTTGACGGGAACAACGACA ACTTTGAGCCGTGGAAGTGTACAAGATGCATGCGCCATTCGATATGCCAGTGGCAACAAAGCCAAGGAGATTCTG GGGTACGAGGCGCGCATAGGTATCGAGGAAGCCATCCGTTTGAGTTGCGAGGATTATGCTTCTCGTCTCGGGTTC GAATTGCCTCCTCAATAG |
| Transcript | >Pro_DTO377G3_2|g3072.t1 ATGACTGACACAGCGAGGAAAGTCCTGATATCTGGTGGCACGGGTTTTGTAGGCTCGGCCGTGGTACGGGCTCTT GCAGAAAAATACCCAAACTTTATCATCGCCGTCATCGACCAAAACCCTCCACGAGCCGAGCACGTCCTGCCAGAA ATAACTACGTGGATTCAGGTGGATATTACTTCAACTGAAACATTGAGCAAAGCATTTGAGGCTGTGAAGCCAGAT ATCGTTATCCACACTGCTGGAGTCGTCCCAGATCTGGCCGAACGGTTTGGTCGCCGACTAGAACAGGAGGTATGG AAGATCAACTTTGAAGGCACACGGAATATTCTGGATATATCCAAGCACAGCGGGGTTGAAGTATTCATATACACG AGCAGTTGCTGTGTGGTGATCGACGATACGCGTACCGCTCATCCTAACATCAATGAAGAATGGCCCTCGGCATTT AGGTCAACCATTTATGGAGAGTCCAAGGCTGCTGCAGAAGCACTCGTTCTAAATGCCTCAAGCAGTAAAATGGTG ACATGTGCCCTCCGGCCATCGGTACTATGCGGACCAGGAGACTACCAGCTATTACCAGCTATTCACGCATGTATC GCCAAATACGAAACCCCTTTTTTGATCGGAGATGGCTTCAACCTATGGGATATCACCCATGTCGACAATGCCGCC GATGCTCATATCCTAGCCATAGAGAATCTGCTATCATCTCGCACGGCTGCAGGCGAGGCATTTTTCATTCAGAAT AACGAACCTATCGCCTTTCGTGATTTTTGTCTGGCAATTTGGGCGCATTTTGGGCATGTCCCTCCTTTTCAAATG CATATCCCTAAGAGTCTGGCTTACTTCACCGGGTTGGTGTGTGAGACTGTCACCTGGTTGACGGGAACAACGACA ACTTTGAGCCGTGGAAGTGTACAAGATGCATGCGCCATTCGATATGCCAGTGGCAACAAAGCCAAGGAGATTCTG GGGTACGAGGCGCGCATAGGTATCGAGGAAGCCATCCGTTTGAGTTGCGAGGATTATGCTTCTCGTCTCGGGTTC GAATTGCCTCCTCAATAG |
| Gene | >Pro_DTO377G3_2|g3072.t1 ATGACTGACACAGCGAGGAAAGTCCTGATATCTGGTGGCACGGGTTTTGTAGGCTCGGCCGTGGTACGGGCTCTT GCAGAAAAATACCCAAACTTTATCATCGCCGTCATCGACCAAAACCCTCCACGAGCCGAGCACGTCCTGCCAGAA ATAACTACGTGGATTCAGGTGGATATTACTTCAACTGAAACATTGAGCAAAGCATTTGAGGCTGTGAAGCCAGAT ATCGTTATCCACACTGCTGGAGTCGTCCCAGATCTGGCCGAACGGTTTGGTCGCCGACTAGAACAGGAGGTATGG AAGATCAACTTTGAAGGCACACGGAATATTCTGGATATATCCAAGCACAGCGGGGTTGAAGTATTCATATACACG AGCAGTTGCTGTGTGGTGATCGACGATACGCGTACCGCTCATCCTAACATCAATGAAGAATGGCCCTCGGCATTT AGGTCAACCATTTATGGAGAGTCCAAGGTTGGAACTACCAATCCCATCAGCAAGATTCACGGCATCGATATGAGA TATATAACTAACACGATTTGGGATGGTCACTAGGCTGCTGCAGAAGCACTCGTTCTAAATGCCTCAAGCAGTAAA ATGGTGACATGTGCCCTCCGGCCATCGGTACTATGCGGACCAGGAGACTACCAGCTATTACCAGCTATTCACGCA TGTATCGCCAAATACGAAACCCCTTTTTTGATCGGAGATGGCTTCAACCTATGGGATATCACCCATGTCGACAAT GCCGCCGATGCTCATATCCTAGCCATAGAGAATCTGCTATCATCTCGCACGGCTGCAGGCGAGGCATTTTTCATT CAGAATAACGAACCTATCGCCTTTCGTGATTTTTGTCTGGCAATTTGGGCGCATTTTGGGCATGTCCCTCCTTTT CAAATGCATATCCCTAAGAGTCTGGCTTACTTCACCGGGTTGGTGTGTGAGACTGTCACCTGGTTGACGGGAACA ACGACAACTTTGAGCCGTGGAAGTGTACAAGATGCATGCGCCATTCGATATGCCAGTGGCAACAAAGCCAAGGAG ATTCTGGGGTACGAGGCGCGCATAGGTATCGAGGAAGCCATCCGTTTGAGTTGCGAGGTAAGTAAACACCAAGCG TAACCTTTTCTATTGCCGTACTCACCAAAGCAATTTAGGATTATGCTTCTCGTCTCGGGTTCGAATTGCCTCCTC AATAG |