Protein ID | Pro_DTO377G3_2|g3064.t1 |
Gene name | |
Location | scaffold_04:618044..619340 |
Strand | + |
Gene length (bp) | 1296 |
Transcript length (bp) | 1296 |
Coding sequence length (bp) | 1296 |
Protein length (aa) | 432 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00144 | Beta-lactamase | Beta-lactamase | 3.3E-61 | 69 | 409 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 21 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 3.44 | 0.73 | 6.16 |
5d_25C | Five days - 25 degrees Celsius | 1.48 | 0.03 | 2.93 |
7d_25C | Seven days - 25 degrees Celsius | 1.54 | 0.04 | 3.03 |
10d_25C | Ten days - 25 degrees Celsius | 1.25 | 0.09 | 2.42 |
7d_15C | Seven days - 15 degrees Celsius | 1.96 | 0.15 | 3.77 |
7d_30C | Seven days - 30 degrees Celsius | 2.44 | 0.46 | 4.43 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.101006 | no |
3d_25C | 7d_25C | 0.101148 | no |
3d_25C | 7d_15C | 0.285720 | no |
3d_25C | 7d_30C | 0.512600 | no |
3d_25C | 10d_25C | 0.028871 | yes |
5d_25C | 7d_25C | 0.963940 | no |
5d_25C | 7d_15C | 0.690875 | no |
5d_25C | 7d_30C | 0.376011 | no |
5d_25C | 10d_25C | 0.824242 | no |
7d_25C | 7d_15C | 0.732208 | no |
7d_25C | 7d_30C | 0.400368 | no |
7d_25C | 10d_25C | 0.772694 | no |
7d_15C | 7d_30C | 0.733670 | no |
7d_15C | 10d_25C | 0.454517 | no |
7d_30C | 10d_25C | 0.171107 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g3064.t1 MRLKLSAISLIASCGSLCSATDRVLKHGSPESVGLLAEPLKEMPLNLSQYTVAANYGAFTYDLVHPVQPGGSVVV GHKATIVSSFAFGHTNMYADSNGTLLPHAKWTPNHIDTIYDMASLTKVFTAVAALRAIDEGKLSLYRTVASYIPE FATNGKENITILMLVTHTSGFPPDPLPGLYDPSYTTMQQRVNAVLEQALQDAPGSTYTYSDLNFMNLRFVLEKVT GKPFDEYVNEYTSELGMTSTFFNKGNNQSPSFHYYSRMAPTEYQIEVLGDDEPKRPQPVRGTVHDENAWSLNGVS GHAGLFSTAGDVAILCQMILNNGTYGGKRILKPETVDLMFHNFNTKFPGDEHSVGFELNQNYFSGPMANMLAGGH TGFTGTTLVVDRASDTFMVMMAHRVYPSRTWSSNNIVREAVGYWVARALGRDVAFP* |
Coding | >Pro_DTO377G3_2|g3064.t1 ATGAGACTCAAGCTTTCAGCCATTTCCCTCATTGCAAGCTGCGGCTCGCTGTGCAGTGCCACAGACCGTGTCCTC AAGCATGGCTCTCCTGAATCAGTGGGACTTCTTGCCGAGCCTCTCAAGGAGATGCCGCTCAACTTGAGCCAGTAC ACTGTTGCTGCCAATTATGGAGCATTCACCTACGATTTGGTTCACCCCGTCCAGCCGGGAGGCTCCGTTGTCGTC GGTCACAAGGCCACCATTGTGAGCTCCTTCGCTTTCGGCCATACGAACATGTATGCAGACTCCAATGGCACATTG CTCCCTCACGCAAAGTGGACCCCGAACCACATCGACACCATCTACGATATGGCCAGTCTGACTAAAGTGTTCACT GCGGTGGCCGCATTGCGCGCCATTGACGAGGGCAAGCTCAGCTTGTACAGAACCGTTGCCTCCTATATCCCCGAG TTCGCGACCAATGGAAAGGAAAACATCACTATCCTGATGCTGGTGACCCACACAAGTGGCTTCCCTCCTGACCCT CTGCCCGGTCTGTATGATCCATCTTACACGACCATGCAGCAGCGTGTCAATGCCGTCCTCGAGCAAGCCCTCCAG GATGCTCCTGGATCTACCTACACCTACTCTGACTTGAACTTCATGAACCTGCGCTTCGTGTTGGAGAAGGTCACC GGTAAACCATTCGATGAGTATGTCAATGAGTACACCAGCGAGCTCGGCATGACCAGCACCTTCTTCAACAAGGGA AACAACCAGTCCCCTTCATTCCATTACTACTCGCGCATGGCACCGACTGAGTACCAGATCGAAGTTCTGGGAGAC GACGAGCCCAAGCGTCCTCAGCCCGTGCGTGGAACCGTGCACGACGAGAATGCCTGGTCTCTTAACGGTGTGAGC GGACACGCCGGTCTCTTCTCGACCGCCGGTGACGTGGCAATCCTCTGCCAGATGATCCTCAACAACGGTACCTAT GGCGGCAAGCGGATCCTGAAGCCGGAGACTGTCGACTTGATGTTCCACAACTTCAACACCAAATTCCCTGGTGAT GAGCACAGTGTCGGCTTCGAGCTCAACCAGAACTACTTCTCCGGACCCATGGCCAATATGCTTGCTGGAGGCCAC ACTGGCTTTACTGGTACCACGCTTGTTGTTGATCGCGCATCGGACACCTTCATGGTCATGATGGCCCACCGTGTG TATCCCAGCCGTACCTGGTCGAGTAACAACATTGTTCGGGAGGCGGTAGGCTATTGGGTCGCCCGTGCGCTTGGT CGGGATGTTGCCTTCCCTTGA |
Transcript | >Pro_DTO377G3_2|g3064.t1 ATGAGACTCAAGCTTTCAGCCATTTCCCTCATTGCAAGCTGCGGCTCGCTGTGCAGTGCCACAGACCGTGTCCTC AAGCATGGCTCTCCTGAATCAGTGGGACTTCTTGCCGAGCCTCTCAAGGAGATGCCGCTCAACTTGAGCCAGTAC ACTGTTGCTGCCAATTATGGAGCATTCACCTACGATTTGGTTCACCCCGTCCAGCCGGGAGGCTCCGTTGTCGTC GGTCACAAGGCCACCATTGTGAGCTCCTTCGCTTTCGGCCATACGAACATGTATGCAGACTCCAATGGCACATTG CTCCCTCACGCAAAGTGGACCCCGAACCACATCGACACCATCTACGATATGGCCAGTCTGACTAAAGTGTTCACT GCGGTGGCCGCATTGCGCGCCATTGACGAGGGCAAGCTCAGCTTGTACAGAACCGTTGCCTCCTATATCCCCGAG TTCGCGACCAATGGAAAGGAAAACATCACTATCCTGATGCTGGTGACCCACACAAGTGGCTTCCCTCCTGACCCT CTGCCCGGTCTGTATGATCCATCTTACACGACCATGCAGCAGCGTGTCAATGCCGTCCTCGAGCAAGCCCTCCAG GATGCTCCTGGATCTACCTACACCTACTCTGACTTGAACTTCATGAACCTGCGCTTCGTGTTGGAGAAGGTCACC GGTAAACCATTCGATGAGTATGTCAATGAGTACACCAGCGAGCTCGGCATGACCAGCACCTTCTTCAACAAGGGA AACAACCAGTCCCCTTCATTCCATTACTACTCGCGCATGGCACCGACTGAGTACCAGATCGAAGTTCTGGGAGAC GACGAGCCCAAGCGTCCTCAGCCCGTGCGTGGAACCGTGCACGACGAGAATGCCTGGTCTCTTAACGGTGTGAGC GGACACGCCGGTCTCTTCTCGACCGCCGGTGACGTGGCAATCCTCTGCCAGATGATCCTCAACAACGGTACCTAT GGCGGCAAGCGGATCCTGAAGCCGGAGACTGTCGACTTGATGTTCCACAACTTCAACACCAAATTCCCTGGTGAT GAGCACAGTGTCGGCTTCGAGCTCAACCAGAACTACTTCTCCGGACCCATGGCCAATATGCTTGCTGGAGGCCAC ACTGGCTTTACTGGTACCACGCTTGTTGTTGATCGCGCATCGGACACCTTCATGGTCATGATGGCCCACCGTGTG TATCCCAGCCGTACCTGGTCGAGTAACAACATTGTTCGGGAGGCGGTAGGCTATTGGGTCGCCCGTGCGCTTGGT CGGGATGTTGCCTTCCCTTGA |
Gene | >Pro_DTO377G3_2|g3064.t1 ATGAGACTCAAGCTTTCAGCCATTTCCCTCATTGCAAGCTGCGGCTCGCTGTGCAGTGCCACAGACCGTGTCCTC AAGCATGGCTCTCCTGAATCAGTGGGACTTCTTGCCGAGCCTCTCAAGGAGATGCCGCTCAACTTGAGCCAGTAC ACTGTTGCTGCCAATTATGGAGCATTCACCTACGATTTGGTTCACCCCGTCCAGCCGGGAGGCTCCGTTGTCGTC GGTCACAAGGCCACCATTGTGAGCTCCTTCGCTTTCGGCCATACGAACATGTATGCAGACTCCAATGGCACATTG CTCCCTCACGCAAAGTGGACCCCGAACCACATCGACACCATCTACGATATGGCCAGTCTGACTAAAGTGTTCACT GCGGTGGCCGCATTGCGCGCCATTGACGAGGGCAAGCTCAGCTTGTACAGAACCGTTGCCTCCTATATCCCCGAG TTCGCGACCAATGGAAAGGAAAACATCACTATCCTGATGCTGGTGACCCACACAAGTGGCTTCCCTCCTGACCCT CTGCCCGGTCTGTATGATCCATCTTACACGACCATGCAGCAGCGTGTCAATGCCGTCCTCGAGCAAGCCCTCCAG GATGCTCCTGGATCTACCTACACCTACTCTGACTTGAACTTCATGAACCTGCGCTTCGTGTTGGAGAAGGTCACC GGTAAACCATTCGATGAGTATGTCAATGAGTACACCAGCGAGCTCGGCATGACCAGCACCTTCTTCAACAAGGGA AACAACCAGTCCCCTTCATTCCATTACTACTCGCGCATGGCACCGACTGAGTACCAGATCGAAGTTCTGGGAGAC GACGAGCCCAAGCGTCCTCAGCCCGTGCGTGGAACCGTGCACGACGAGAATGCCTGGTCTCTTAACGGTGTGAGC GGACACGCCGGTCTCTTCTCGACCGCCGGTGACGTGGCAATCCTCTGCCAGATGATCCTCAACAACGGTACCTAT GGCGGCAAGCGGATCCTGAAGCCGGAGACTGTCGACTTGATGTTCCACAACTTCAACACCAAATTCCCTGGTGAT GAGCACAGTGTCGGCTTCGAGCTCAACCAGAACTACTTCTCCGGACCCATGGCCAATATGCTTGCTGGAGGCCAC ACTGGCTTTACTGGTACCACGCTTGTTGTTGATCGCGCATCGGACACCTTCATGGTCATGATGGCCCACCGTGTG TATCCCAGCCGTACCTGGTCGAGTAACAACATTGTTCGGGAGGCGGTAGGCTATTGGGTCGCCCGTGCGCTTGGT CGGGATGTTGCCTTCCCTTGA |