© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3054.t1 |
| Gene name | |
| Location | scaffold_04:585486..586572 |
| Strand | + |
| Gene length (bp) | 1086 |
| Transcript length (bp) | 1029 |
| Coding sequence length (bp) | 1029 |
| Protein length (aa) | 343 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06687 | SUR7 | SUR7/PalI family | 1.3E-49 | 9 | 255 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0016020 | membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 162 | 184 | 22 |
| 3 | 196 | 218 | 22 |
| 4 | 238 | 260 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 55.23 | 31.31 | 79.15 |
| 5d_25C | Five days - 25 degrees Celsius | 30.40 | 14.56 | 46.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 43.92 | 20.36 | 67.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 36.99 | 17.29 | 56.70 |
| 7d_15C | Seven days - 15 degrees Celsius | 34.01 | 13.61 | 54.41 |
| 7d_30C | Seven days - 30 degrees Celsius | 44.95 | 22.91 | 67.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.016634 | yes |
| 3d_25C | 7d_25C | 0.462462 | no |
| 3d_25C | 7d_15C | 0.101883 | no |
| 3d_25C | 7d_30C | 0.486244 | no |
| 3d_25C | 10d_25C | 0.144882 | no |
| 5d_25C | 7d_25C | 0.243117 | no |
| 5d_25C | 7d_15C | 0.796541 | no |
| 5d_25C | 7d_30C | 0.176783 | no |
| 5d_25C | 10d_25C | 0.584060 | no |
| 7d_25C | 7d_15C | 0.487809 | no |
| 7d_25C | 7d_30C | 0.960243 | no |
| 7d_25C | 10d_25C | 0.650092 | no |
| 7d_15C | 7d_30C | 0.420406 | no |
| 7d_15C | 10d_25C | 0.856965 | no |
| 7d_30C | 10d_25C | 0.573286 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3054.t1 MGKAGRVACIFTPYVLTIASLICIILVGLGCTKASSSTLNNLYFIRLDLSNISEGSALTSEITDRLSAAGITDVT ADEVSETIETLQADANISDFYDIGLWGYCEGNITNSTDTVSSCTDPKAEFYFNPSTILGVSETELEKEIGSDLKK TMKIYKAVSKWMFIAYLVAFIATCAQVLLGIFAIFSRWGSCVTTIVSIVSFLFTLGASLTSTIMFSIAKSSLGTV LEVYGIDVSLGKNIYAATWLAVAFSLGATFFWMLSTCCCSGRSPYGHRDRSPRGITAEKAPYTYEPIGAAHPPFG SQQPLVPQHGYSTSYPAATHNNDIPMTHNNQQSSAYEPFRHA* |
| Coding | >Pro_DTO377G3_2|g3054.t1 ATGGGAAAAGCTGGTCGTGTCGCGTGTATCTTCACGCCCTATGTCTTGACCATCGCATCATTGATCTGCATCATT TTGGTGGGATTGGGCTGCACAAAAGCCAGTTCTTCGACCTTGAATAATCTATACTTCATTCGTCTCGACCTCTCG AACATAAGTGAAGGATCGGCACTTACATCAGAAATCACAGATCGCCTCAGTGCTGCCGGTATCACTGATGTCACT GCGGATGAGGTCTCGGAGACCATCGAAACACTGCAGGCTGATGCCAATATTTCTGATTTCTACGACATCGGTCTC TGGGGTTACTGCGAGGGAAATATCACCAACAGCACGGATACCGTCTCCAGCTGCACAGACCCCAAGGCCGAGTTC TACTTCAACCCGTCTACAATCCTAGGAGTGAGCGAGACCGAGCTTGAGAAGGAGATTGGCAGCGACCTGAAGAAG ACCATGAAAATTTACAAGGCTGTCTCCAAGTGGATGTTCATTGCCTACCTAGTCGCGTTTATTGCCACTTGCGCC CAGGTCCTGCTTGGTATCTTCGCCATCTTCAGCCGCTGGGGCAGCTGCGTCACCACGATTGTCTCGATTGTTTCG TTCCTCTTCACCCTTGGCGCATCGCTTACCTCGACTATCATGTTCTCGATCGCAAAAAGCTCCCTCGGCACAGTC CTCGAGGTCTATGGTATCGATGTAAGCCTGGGTAAGAACATATACGCCGCCACCTGGCTCGCAGTCGCTTTCTCT CTGGGAGCCACCTTCTTCTGGATGCTCAGCACCTGCTGTTGCTCCGGCCGCTCGCCCTACGGCCACAGGGACCGC AGCCCCCGCGGCATCACCGCAGAGAAGGCCCCCTACACTTATGAGCCCATCGGTGCCGCCCACCCACCCTTCGGT TCTCAGCAGCCCCTTGTTCCCCAACACGGCTACAGCACCTCTTACCCTGCTGCCACCCACAACAACGATATCCCC ATGACCCACAACAACCAGCAGTCAAGCGCCTACGAGCCATTCCGCCATGCTTAA |
| Transcript | >Pro_DTO377G3_2|g3054.t1 ATGGGAAAAGCTGGTCGTGTCGCGTGTATCTTCACGCCCTATGTCTTGACCATCGCATCATTGATCTGCATCATT TTGGTGGGATTGGGCTGCACAAAAGCCAGTTCTTCGACCTTGAATAATCTATACTTCATTCGTCTCGACCTCTCG AACATAAGTGAAGGATCGGCACTTACATCAGAAATCACAGATCGCCTCAGTGCTGCCGGTATCACTGATGTCACT GCGGATGAGGTCTCGGAGACCATCGAAACACTGCAGGCTGATGCCAATATTTCTGATTTCTACGACATCGGTCTC TGGGGTTACTGCGAGGGAAATATCACCAACAGCACGGATACCGTCTCCAGCTGCACAGACCCCAAGGCCGAGTTC TACTTCAACCCGTCTACAATCCTAGGAGTGAGCGAGACCGAGCTTGAGAAGGAGATTGGCAGCGACCTGAAGAAG ACCATGAAAATTTACAAGGCTGTCTCCAAGTGGATGTTCATTGCCTACCTAGTCGCGTTTATTGCCACTTGCGCC CAGGTCCTGCTTGGTATCTTCGCCATCTTCAGCCGCTGGGGCAGCTGCGTCACCACGATTGTCTCGATTGTTTCG TTCCTCTTCACCCTTGGCGCATCGCTTACCTCGACTATCATGTTCTCGATCGCAAAAAGCTCCCTCGGCACAGTC CTCGAGGTCTATGGTATCGATGTAAGCCTGGGTAAGAACATATACGCCGCCACCTGGCTCGCAGTCGCTTTCTCT CTGGGAGCCACCTTCTTCTGGATGCTCAGCACCTGCTGTTGCTCCGGCCGCTCGCCCTACGGCCACAGGGACCGC AGCCCCCGCGGCATCACCGCAGAGAAGGCCCCCTACACTTATGAGCCCATCGGTGCCGCCCACCCACCCTTCGGT TCTCAGCAGCCCCTTGTTCCCCAACACGGCTACAGCACCTCTTACCCTGCTGCCACCCACAACAACGATATCCCC ATGACCCACAACAACCAGCAGTCAAGCGCCTACGAGCCATTCCGCCATGCTTAA |
| Gene | >Pro_DTO377G3_2|g3054.t1 ATGGGAAAAGCTGGTCGTGTCGCGTGTATCTTCACGCCCTATGTCTTGACCATCGCATCATTGATCTGCATCATT TTGGTGGGATTGGGCTGCACAAAAGCCAGTTCTTCGACCTTGAATAATCTATACTTCATTCGTGTAAGTGATCAA AGATTCTACATGGTTACTGCATCCGCTAATGCCAATAATCTATAGCTCGACCTCTCGAACATAAGTGAAGGATCG GCACTTACATCAGAAATCACAGATCGCCTCAGTGCTGCCGGTATCACTGATGTCACTGCGGATGAGGTCTCGGAG ACCATCGAAACACTGCAGGCTGATGCCAATATTTCTGATTTCTACGACATCGGTCTCTGGGGTTACTGCGAGGGA AATATCACCAACAGCACGGATACCGTCTCCAGCTGCACAGACCCCAAGGCCGAGTTCTACTTCAACCCGTCTACA ATCCTAGGAGTGAGCGAGACCGAGCTTGAGAAGGAGATTGGCAGCGACCTGAAGAAGACCATGAAAATTTACAAG GCTGTCTCCAAGTGGATGTTCATTGCCTACCTAGTCGCGTTTATTGCCACTTGCGCCCAGGTCCTGCTTGGTATC TTCGCCATCTTCAGCCGCTGGGGCAGCTGCGTCACCACGATTGTCTCGATTGTTTCGTTCCTCTTCACCCTTGGC GCATCGCTTACCTCGACTATCATGTTCTCGATCGCAAAAAGCTCCCTCGGCACAGTCCTCGAGGTCTATGGTATC GATGTAAGCCTGGGTAAGAACATATACGCCGCCACCTGGCTCGCAGTCGCTTTCTCTCTGGGAGCCACCTTCTTC TGGATGCTCAGCACCTGCTGTTGCTCCGGCCGCTCGCCCTACGGCCACAGGGACCGCAGCCCCCGCGGCATCACC GCAGAGAAGGCCCCCTACACTTATGAGCCCATCGGTGCCGCCCACCCACCCTTCGGTTCTCAGCAGCCCCTTGTT CCCCAACACGGCTACAGCACCTCTTACCCTGCTGCCACCCACAACAACGATATCCCCATGACCCACAACAACCAG CAGTCAAGCGCCTACGAGCCATTCCGCCATGCTTAA |