© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3053.t1 |
| Gene name | |
| Location | scaffold_04:583120..584404 |
| Strand | + |
| Gene length (bp) | 1284 |
| Transcript length (bp) | 1002 |
| Coding sequence length (bp) | 1002 |
| Protein length (aa) | 334 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00150 | Cellulase | Cellulase (glycosyl hydrolase family 5) | 4.0E-54 | 29 | 302 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0071704 | organic substance metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 11.67 | 4.42 | 18.92 |
| 5d_25C | Five days - 25 degrees Celsius | 16.75 | 7.09 | 26.42 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.09 | 8.48 | 29.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 24.84 | 11.88 | 37.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 18.88 | 8.41 | 29.35 |
| 7d_30C | Seven days - 30 degrees Celsius | 21.87 | 10.05 | 33.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.310613 | no |
| 3d_25C | 7d_25C | 0.137144 | no |
| 3d_25C | 7d_15C | 0.145004 | no |
| 3d_25C | 7d_30C | 0.038966 | yes |
| 3d_25C | 10d_25C | 0.011388 | yes |
| 5d_25C | 7d_25C | 0.761966 | no |
| 5d_25C | 7d_15C | 0.785956 | no |
| 5d_25C | 7d_30C | 0.457004 | no |
| 5d_25C | 10d_25C | 0.221892 | no |
| 7d_25C | 7d_15C | 0.983302 | no |
| 7d_25C | 7d_30C | 0.739065 | no |
| 7d_25C | 10d_25C | 0.445517 | no |
| 7d_15C | 7d_30C | 0.712040 | no |
| 7d_15C | 10d_25C | 0.421074 | no |
| 7d_30C | 10d_25C | 0.745942 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3053.t1 MRLGQIAFLAVVAGPAAAVPTKNHAKRASPFQWFGTSESGAEFGEDQIPGVYGTDYIFPDASTIQILTGKGMNIF RVDFLMERLVPDSMTGGFDDAYLSNLTTTVKAITDAGSHAVLDPHNYGRFNGEIISSTSDFQTFWKNVAGEFASN ELVIFDTNNEYHDMDQDLVLQLNQAAIDGIREAGATSQYIFVEGNSWTGAWTWVDVNDNLKDLTDPQDKIVYEMH QYLDSDGSGTSEICVSTTIGEERVTDATQWLKDNGKVGVLGEFAGGVNDDCKAAITGMLDYLGDNSDVWLGALWW AAGPWWGDYIFSMEPTTGAAYTGMLSTLEPYLE* |
| Coding | >Pro_DTO377G3_2|g3053.t1 ATGAGACTCGGTCAAATTGCCTTCCTCGCCGTTGTGGCTGGACCCGCAGCAGCAGTTCCTACAAAGAACCATGCA AAGAGAGCTTCGCCCTTTCAATGGTTCGGAACAAGCGAGTCCGGAGCTGAGTTTGGCGAGGACCAAATTCCTGGC GTCTATGGAACCGATTATATCTTCCCGGATGCTAGCACCATTCAAATTTTGACTGGAAAAGGAATGAACATCTTC CGGGTGGACTTCCTGATGGAACGGCTGGTACCGGACTCCATGACAGGCGGGTTTGACGATGCCTACCTTAGCAAT CTGACCACGACGGTCAAAGCCATCACCGATGCAGGATCCCACGCCGTTCTTGATCCGCACAACTATGGAAGATTC AACGGCGAGATCATTTCGAGCACATCCGACTTTCAGACATTCTGGAAGAACGTCGCAGGCGAATTCGCTTCTAAT GAGCTGGTCATTTTCGACACAAACAACGAGTACCACGACATGGACCAAGACCTCGTCCTACAGCTCAACCAGGCA GCCATTGACGGCATCCGCGAAGCAGGAGCAACAAGCCAATATATCTTCGTCGAGGGCAACTCTTGGACCGGCGCG TGGACCTGGGTCGACGTGAACGATAACCTGAAGGACCTGACCGACCCCCAAGACAAGATTGTCTATGAGATGCAC CAGTACCTCGACTCGGACGGGTCAGGCACGAGCGAGATATGTGTTTCGACGACGATCGGAGAAGAGCGTGTGACG GACGCGACACAGTGGCTGAAGGATAACGGTAAGGTTGGGGTTTTAGGCGAGTTTGCCGGTGGTGTGAATGATGAT TGCAAGGCGGCGATCACAGGCATGCTTGATTACCTGGGTGACAACTCGGATGTGTGGCTCGGGGCATTGTGGTGG GCTGCCGGACCTTGGTGGGGTGATTATATCTTTAGTATGGAACCTACCACTGGGGCAGCGTACACAGGCATGTTG TCGACGCTTGAGCCATATCTGGAGTAA |
| Transcript | >Pro_DTO377G3_2|g3053.t1 ATGAGACTCGGTCAAATTGCCTTCCTCGCCGTTGTGGCTGGACCCGCAGCAGCAGTTCCTACAAAGAACCATGCA AAGAGAGCTTCGCCCTTTCAATGGTTCGGAACAAGCGAGTCCGGAGCTGAGTTTGGCGAGGACCAAATTCCTGGC GTCTATGGAACCGATTATATCTTCCCGGATGCTAGCACCATTCAAATTTTGACTGGAAAAGGAATGAACATCTTC CGGGTGGACTTCCTGATGGAACGGCTGGTACCGGACTCCATGACAGGCGGGTTTGACGATGCCTACCTTAGCAAT CTGACCACGACGGTCAAAGCCATCACCGATGCAGGATCCCACGCCGTTCTTGATCCGCACAACTATGGAAGATTC AACGGCGAGATCATTTCGAGCACATCCGACTTTCAGACATTCTGGAAGAACGTCGCAGGCGAATTCGCTTCTAAT GAGCTGGTCATTTTCGACACAAACAACGAGTACCACGACATGGACCAAGACCTCGTCCTACAGCTCAACCAGGCA GCCATTGACGGCATCCGCGAAGCAGGAGCAACAAGCCAATATATCTTCGTCGAGGGCAACTCTTGGACCGGCGCG TGGACCTGGGTCGACGTGAACGATAACCTGAAGGACCTGACCGACCCCCAAGACAAGATTGTCTATGAGATGCAC CAGTACCTCGACTCGGACGGGTCAGGCACGAGCGAGATATGTGTTTCGACGACGATCGGAGAAGAGCGTGTGACG GACGCGACACAGTGGCTGAAGGATAACGGTAAGGTTGGGGTTTTAGGCGAGTTTGCCGGTGGTGTGAATGATGAT TGCAAGGCGGCGATCACAGGCATGCTTGATTACCTGGGTGACAACTCGGATGTGTGGCTCGGGGCATTGTGGTGG GCTGCCGGACCTTGGTGGGGTGATTATATCTTTAGTATGGAACCTACCACTGGGGCAGCGTACACAGGCATGTTG TCGACGCTTGAGCCATATCTGGAGTAA |
| Gene | >Pro_DTO377G3_2|g3053.t1 ATGAGACTCGGTCAAATTGCCTTCCTCGCCGTTGTGGCTGGACCCGCAGCAGCAGTTCCTACAAAGAACCATGCA AAGAGAGCTTCGCCCTTTCAATGTGCGAGTCCATGAGTTCCAAAGATATTTCTGACAATCCATTGACCAAATTTC TCGTATAGGGTTCGGAACAAGCGAGTCCGGAGCTGAGTTTGGCGAGGACCAAATTCCTGGCGTCTATGTGAGTTG GCCAAACATGTCTTCGGAGAAGCTCCACTGATAAAAATCGGAATAGGGAACCGATTATATCTTCCCGGATGCTAG CACCATTCAAATTTTGACTGGAAAAGGAATGAACATCTTCCGGGTGGACTTCCTGATGGAACGGCTGGTACCGGA CTCCATGACAGGCGGGTTTGACGATGCCTACCTTAGCAATCTGACCACGGTATGTTGTGCCGTATCTATCCCTAA GGGAACAAGCGCATACTGATCTAGTAGCAGACGGTCAAAGCCATCACCGATGCAGGATCCCACGCCGTTCTTGAT CCGCACAACTATGGAAGATTGTAAATATTCCATCGAACCAACGAATGAATCGAAGCTGATGAGTGTACATAGCAA CGGCGAGATCATTTCGAGCACATCCGACTTTCAGACATTCTGGAAGAACGTCGCAGGCGAATTCGCTTCTAATGA GCTGGTCATTTTCGACACAAGTTAGTACCCCAGATCTTGAGTCGTATCACAAAAAGTCTGTTAACCGCATCATGC ATAGACAACGAGTACCACGACATGGACCAAGACCTCGTCCTACAGCTCAACCAGGCAGCCATTGACGGCATCCGC GAAGCAGGAGCAACAAGCCAATATATCTTCGTCGAGGGCAACTCTTGGACCGGCGCGTGGACCTGGGTCGACGTG AACGATAACCTGAAGGACCTGACCGACCCCCAAGACAAGATTGTCTATGAGATGCACCAGTACCTCGACTCGGAC GGGTCAGGCACGAGCGAGATATGTGTTTCGACGACGATCGGAGAAGAGCGTGTGACGGACGCGACACAGTGGCTG AAGGATAACGGTAAGGTTGGGGTTTTAGGCGAGTTTGCCGGTGGTGTGAATGATGATTGCAAGGCGGCGATCACA GGCATGCTTGATTACCTGGGTGACAACTCGGATGTGTGGCTCGGGGCATTGTGGTGGGCTGCCGGACCTTGGTGG GGTGATTATATCTTTAGTATGGAACCTACCACTGGGGCAGCGTACACAGGCATGTTGTCGACGCTTGAGCCATAT CTGGAGTAA |