© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g3049.t1 |
| Gene name | |
| Location | scaffold_04:570517..571933 |
| Strand | - |
| Gene length (bp) | 1416 |
| Transcript length (bp) | 1416 |
| Coding sequence length (bp) | 1416 |
| Protein length (aa) | 472 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00171 | Aldedh | Aldehyde dehydrogenase family | 2.2E-127 | 5 | 455 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5124.62 | 1968.67 | 8280.58 |
| 5d_25C | Five days - 25 degrees Celsius | 5162.88 | 2001.61 | 8324.14 |
| 7d_25C | Seven days - 25 degrees Celsius | 4308.21 | 1657.43 | 6958.98 |
| 10d_25C | Ten days - 25 degrees Celsius | 4137.47 | 1713.44 | 6561.51 |
| 7d_15C | Seven days - 15 degrees Celsius | 4364.97 | 1611.33 | 7118.60 |
| 7d_30C | Seven days - 30 degrees Celsius | 3296.38 | 1302.13 | 5290.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.989263 | no |
| 3d_25C | 7d_25C | 0.696481 | no |
| 3d_25C | 7d_15C | 0.713952 | no |
| 3d_25C | 7d_30C | 0.200959 | no |
| 3d_25C | 10d_25C | 0.605192 | no |
| 5d_25C | 7d_25C | 0.687286 | no |
| 5d_25C | 7d_15C | 0.704882 | no |
| 5d_25C | 7d_30C | 0.194103 | no |
| 5d_25C | 10d_25C | 0.593436 | no |
| 7d_25C | 7d_15C | 0.981265 | no |
| 7d_25C | 7d_30C | 0.493093 | no |
| 7d_25C | 10d_25C | 0.939966 | no |
| 7d_15C | 7d_30C | 0.458662 | no |
| 7d_15C | 10d_25C | 0.917165 | no |
| 7d_30C | 10d_25C | 0.563124 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g3049.t1 MSKPAHYKSINPATGELFQSYKDTTDQEVSNALDRAQECFTDDWRRRTIAERSEVLHRVARLMSDRSEHMATLIT KEMGKLYTQALAEVSLSVDILTYYATNAEEFLKGTTIHEHGASSEVICEPFGIILAIEPWNFPYYQLARVAGPQL MAGNVVLLKHAARVPQCALAFSQLFEDAGAPEGAWTNLFCTRSQIETIIDDFRVRGVTLTGSERAGSIVAECAGR NLKKVILELGGSDPFIVLEDADLDFAIAEACAGRIWCLGQVCSAPKRFIVVGKERTERFIEGMRHRFSSRVAGDP MDPHTAVSPLSSESAMKVLLDEIDKAKSHGATVLFGGNRIDRPGFYIESTMITDVTPENPIFYEELFGPVSMVFS VDTDDAAIELANATKFGLGSSVISENHEHARAVANKIEAGMVFINSFFVTVPELPFGGVKNSGFGRELSELGIGE FINKKLIRVAPESKKLVKYDD* |
| Coding | >Pro_DTO377G3_2|g3049.t1 ATGTCCAAGCCAGCCCATTACAAATCCATCAACCCGGCAACCGGTGAACTGTTCCAATCGTATAAGGATACTACC GACCAGGAGGTGTCCAATGCACTGGATAGAGCACAAGAATGCTTCACCGACGATTGGCGACGGCGTACTATCGCT GAAAGGTCGGAGGTTCTTCACCGTGTTGCGCGGCTCATGAGTGACCGATCAGAGCACATGGCCACACTCATCACC AAGGAGATGGGTAAATTATACACCCAAGCCTTAGCCGAGGTCTCACTCTCGGTCGATATCTTGACATATTATGCA ACGAACGCCGAGGAGTTCTTGAAAGGTACCACGATTCACGAGCACGGAGCTAGTTCTGAAGTCATTTGCGAACCG TTCGGCATCATTCTCGCCATCGAGCCATGGAACTTCCCATATTATCAATTGGCACGTGTTGCGGGGCCCCAATTG ATGGCTGGAAACGTGGTGTTGCTGAAACATGCGGCACGCGTGCCGCAATGCGCGCTCGCATTTTCTCAGCTCTTC GAGGATGCCGGTGCGCCTGAGGGCGCGTGGACGAATCTCTTTTGCACCAGATCACAGATTGAAACGATCATCGAC GACTTCCGCGTGCGTGGTGTAACACTTACCGGCAGCGAGCGCGCGGGTTCGATCGTCGCCGAATGTGCTGGACGA AACCTGAAAAAGGTCATCCTTGAGTTAGGCGGGTCGGACCCGTTTATCGTGCTCGAGGATGCGGATTTAGATTTC GCAATCGCGGAGGCCTGCGCTGGACGTATCTGGTGTCTTGGCCAAGTCTGCTCCGCGCCCAAGCGCTTTATCGTG GTTGGCAAGGAGCGTACAGAGCGCTTTATCGAAGGCATGAGACATCGGTTCAGCTCTCGGGTGGCCGGTGACCCT ATGGATCCTCACACTGCTGTCTCTCCGCTGTCCTCGGAAAGTGCTATGAAGGTGCTTTTGGATGAGATAGATAAA GCCAAAAGCCATGGAGCCACGGTACTCTTTGGGGGTAATCGTATTGACCGGCCGGGCTTCTATATCGAGTCTACG ATGATCACAGACGTCACTCCGGAGAACCCCATTTTTTATGAGGAATTATTCGGTCCAGTCTCCATGGTGTTCTCG GTAGATACAGATGATGCTGCCATCGAACTGGCCAACGCAACTAAGTTCGGCCTTGGTTCGTCTGTTATTAGCGAG AATCACGAACATGCTCGCGCCGTGGCAAATAAGATTGAGGCGGGCATGGTTTTCATCAATTCATTCTTTGTGACA GTTCCCGAGTTACCATTTGGAGGTGTCAAGAACTCCGGCTTTGGCAGGGAGTTGTCTGAATTGGGAATTGGAGAA TTCATCAACAAAAAGCTCATTCGAGTGGCGCCTGAATCCAAGAAACTTGTGAAATATGATGACTAA |
| Transcript | >Pro_DTO377G3_2|g3049.t1 ATGTCCAAGCCAGCCCATTACAAATCCATCAACCCGGCAACCGGTGAACTGTTCCAATCGTATAAGGATACTACC GACCAGGAGGTGTCCAATGCACTGGATAGAGCACAAGAATGCTTCACCGACGATTGGCGACGGCGTACTATCGCT GAAAGGTCGGAGGTTCTTCACCGTGTTGCGCGGCTCATGAGTGACCGATCAGAGCACATGGCCACACTCATCACC AAGGAGATGGGTAAATTATACACCCAAGCCTTAGCCGAGGTCTCACTCTCGGTCGATATCTTGACATATTATGCA ACGAACGCCGAGGAGTTCTTGAAAGGTACCACGATTCACGAGCACGGAGCTAGTTCTGAAGTCATTTGCGAACCG TTCGGCATCATTCTCGCCATCGAGCCATGGAACTTCCCATATTATCAATTGGCACGTGTTGCGGGGCCCCAATTG ATGGCTGGAAACGTGGTGTTGCTGAAACATGCGGCACGCGTGCCGCAATGCGCGCTCGCATTTTCTCAGCTCTTC GAGGATGCCGGTGCGCCTGAGGGCGCGTGGACGAATCTCTTTTGCACCAGATCACAGATTGAAACGATCATCGAC GACTTCCGCGTGCGTGGTGTAACACTTACCGGCAGCGAGCGCGCGGGTTCGATCGTCGCCGAATGTGCTGGACGA AACCTGAAAAAGGTCATCCTTGAGTTAGGCGGGTCGGACCCGTTTATCGTGCTCGAGGATGCGGATTTAGATTTC GCAATCGCGGAGGCCTGCGCTGGACGTATCTGGTGTCTTGGCCAAGTCTGCTCCGCGCCCAAGCGCTTTATCGTG GTTGGCAAGGAGCGTACAGAGCGCTTTATCGAAGGCATGAGACATCGGTTCAGCTCTCGGGTGGCCGGTGACCCT ATGGATCCTCACACTGCTGTCTCTCCGCTGTCCTCGGAAAGTGCTATGAAGGTGCTTTTGGATGAGATAGATAAA GCCAAAAGCCATGGAGCCACGGTACTCTTTGGGGGTAATCGTATTGACCGGCCGGGCTTCTATATCGAGTCTACG ATGATCACAGACGTCACTCCGGAGAACCCCATTTTTTATGAGGAATTATTCGGTCCAGTCTCCATGGTGTTCTCG GTAGATACAGATGATGCTGCCATCGAACTGGCCAACGCAACTAAGTTCGGCCTTGGTTCGTCTGTTATTAGCGAG AATCACGAACATGCTCGCGCCGTGGCAAATAAGATTGAGGCGGGCATGGTTTTCATCAATTCATTCTTTGTGACA GTTCCCGAGTTACCATTTGGAGGTGTCAAGAACTCCGGCTTTGGCAGGGAGTTGTCTGAATTGGGAATTGGAGAA TTCATCAACAAAAAGCTCATTCGAGTGGCGCCTGAATCCAAGAAACTTGTGAAATATGATGACTAA |
| Gene | >Pro_DTO377G3_2|g3049.t1 ATGTCCAAGCCAGCCCATTACAAATCCATCAACCCGGCAACCGGTGAACTGTTCCAATCGTATAAGGATACTACC GACCAGGAGGTGTCCAATGCACTGGATAGAGCACAAGAATGCTTCACCGACGATTGGCGACGGCGTACTATCGCT GAAAGGTCGGAGGTTCTTCACCGTGTTGCGCGGCTCATGAGTGACCGATCAGAGCACATGGCCACACTCATCACC AAGGAGATGGGTAAATTATACACCCAAGCCTTAGCCGAGGTCTCACTCTCGGTCGATATCTTGACATATTATGCA ACGAACGCCGAGGAGTTCTTGAAAGGTACCACGATTCACGAGCACGGAGCTAGTTCTGAAGTCATTTGCGAACCG TTCGGCATCATTCTCGCCATCGAGCCATGGAACTTCCCATATTATCAATTGGCACGTGTTGCGGGGCCCCAATTG ATGGCTGGAAACGTGGTGTTGCTGAAACATGCGGCACGCGTGCCGCAATGCGCGCTCGCATTTTCTCAGCTCTTC GAGGATGCCGGTGCGCCTGAGGGCGCGTGGACGAATCTCTTTTGCACCAGATCACAGATTGAAACGATCATCGAC GACTTCCGCGTGCGTGGTGTAACACTTACCGGCAGCGAGCGCGCGGGTTCGATCGTCGCCGAATGTGCTGGACGA AACCTGAAAAAGGTCATCCTTGAGTTAGGCGGGTCGGACCCGTTTATCGTGCTCGAGGATGCGGATTTAGATTTC GCAATCGCGGAGGCCTGCGCTGGACGTATCTGGTGTCTTGGCCAAGTCTGCTCCGCGCCCAAGCGCTTTATCGTG GTTGGCAAGGAGCGTACAGAGCGCTTTATCGAAGGCATGAGACATCGGTTCAGCTCTCGGGTGGCCGGTGACCCT ATGGATCCTCACACTGCTGTCTCTCCGCTGTCCTCGGAAAGTGCTATGAAGGTGCTTTTGGATGAGATAGATAAA GCCAAAAGCCATGGAGCCACGGTACTCTTTGGGGGTAATCGTATTGACCGGCCGGGCTTCTATATCGAGTCTACG ATGATCACAGACGTCACTCCGGAGAACCCCATTTTTTATGAGGAATTATTCGGTCCAGTCTCCATGGTGTTCTCG GTAGATACAGATGATGCTGCCATCGAACTGGCCAACGCAACTAAGTTCGGCCTTGGTTCGTCTGTTATTAGCGAG AATCACGAACATGCTCGCGCCGTGGCAAATAAGATTGAGGCGGGCATGGTTTTCATCAATTCATTCTTTGTGACA GTTCCCGAGTTACCATTTGGAGGTGTCAAGAACTCCGGCTTTGGCAGGGAGTTGTCTGAATTGGGAATTGGAGAA TTCATCAACAAAAAGCTCATTCGAGTGGCGCCTGAATCCAAGAAACTTGTGAAATATGATGACTAA |