© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g304.t1 |
| Gene name | |
| Location | scaffold_01:772346..775036 |
| Strand | + |
| Gene length (bp) | 2690 |
| Transcript length (bp) | 2586 |
| Coding sequence length (bp) | 2586 |
| Protein length (aa) | 862 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05786 | Cnd2 | Condensin complex subunit 2 | 0.0E+00 | 15 | 847 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000796 | condensin complex | Yes |
| GO:0007076 | mitotic chromosome condensation | Yes |
| GO:0022402 | cell cycle process | No |
| GO:0008150 | biological_process | No |
| GO:0051276 | chromosome organization | No |
| GO:0032991 | protein-containing complex | No |
| GO:0009987 | cellular process | No |
| GO:0006996 | organelle organization | No |
| GO:0016043 | cellular component organization | No |
| GO:0005575 | cellular_component | No |
| GO:1903047 | mitotic cell cycle process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0030261 | chromosome condensation | No |
| GO:0044815 | DNA packaging complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 16.77 | 9.41 | 24.13 |
| 5d_25C | Five days - 25 degrees Celsius | 12.17 | 6.25 | 18.08 |
| 7d_25C | Seven days - 25 degrees Celsius | 12.70 | 6.33 | 19.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.22 | 3.79 | 12.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 15.14 | 7.20 | 23.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 18.53 | 10.03 | 27.02 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.235453 | no |
| 3d_25C | 7d_25C | 0.339870 | no |
| 3d_25C | 7d_15C | 0.781561 | no |
| 3d_25C | 7d_30C | 0.774417 | no |
| 3d_25C | 10d_25C | 0.004450 | yes |
| 5d_25C | 7d_25C | 0.922153 | no |
| 5d_25C | 7d_15C | 0.523681 | no |
| 5d_25C | 7d_30C | 0.111905 | no |
| 5d_25C | 10d_25C | 0.172783 | no |
| 7d_25C | 7d_15C | 0.633714 | no |
| 7d_25C | 7d_30C | 0.184143 | no |
| 7d_25C | 10d_25C | 0.139508 | no |
| 7d_15C | 7d_30C | 0.558864 | no |
| 7d_15C | 10d_25C | 0.032181 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g304.t1 MPRVANKVHRRSNGNSTPHKNTPVKIPLNDDEGEKAARMEARQALHDRQMSQIKAAVKTPMPPRRYTLDREESDS PVTPRASHHRSRTSDVNGRAVTPMKRVPILANFEEWMKMATDNKINANNSWNFALIDYFHDMSLLKEGDGVNFQK ASCTLDGCVKIYTSRVDSVATETGKLLSGLADSRDKRGRGEEDAEDGDEDEEGEDGQPRRSRKKTRSHEATLAPS FSSLQLKKFELEFAVDPLFKKASADFDEGGAKGLLLNHLAIDSHGRIVFDSSDDAVDDSAKTSEDDRQESTDPDQ QTDDQAKPNQKPASDTFENNTEIDLATLASRFFPDLDRLDEQDICPSLKNLDLGDPSGSLDLPLLKAPEEWRQDK MDEDGRAHDDPSGIMLDDDNAVGFDDDDATLAGFDLSGDTGFGDGGEVWAREAALEPMLNVHRTTHDGDNDGEGD DGNEDAYAISMSHQTNSHDHENILSYFDNALQKNWAGPEHWKIRRIKEHATPATSAPKQRKEKEPFEIDFAAPLD PAVAELIYTPASSNSAVSLPKTQWKTKGRNLLPDDKHFNSRNLLTLFLKPKAKMGSKKILGKRRRQDLTAGNGDM DEAFWANRKPEENAGEEGAAGAYDANFFADDDGLAFPNGMDLDDDDNLPFADAREMLSPPADGTAGTSAGEAGGA TGLSALLNMVGATPGRPGAGGYGSQLVTQGGRRARPDYVAYARVAKKVDVRRLKTEMWKGMGERLVDAVDFASAS QPGAVSSDAPTEPESESDAPVPPTPKGESPEQVGGRLRFTQIMNSLKEVYPTETLRDISTSFGFICLLHLANEQG LVLESDLSKMGNDAATLEEIFVSRDTHAIIEEGGGM* |
| Coding | >Pro_DTO377G3_2|g304.t1 ATGCCGCGTGTCGCAAACAAGGTACATCGCCGCTCTAACGGCAACTCGACCCCGCACAAAAACACACCGGTCAAG ATACCCCTCAACGATGATGAGGGCGAGAAGGCAGCGCGTATGGAGGCTCGTCAAGCACTTCATGATCGCCAAATG AGTCAGATTAAAGCGGCAGTCAAGACGCCTATGCCACCCCGTCGGTACACCCTCGATCGTGAAGAGAGCGACAGT CCCGTAACTCCTCGAGCCTCACATCATCGCAGTCGCACCAGCGATGTCAATGGCCGTGCAGTGACACCGATGAAG CGCGTGCCTATCTTGGCTAATTTTGAAGAATGGATGAAGATGGCGACTGATAACAAAATCAATGCGAATAACTCC TGGAACTTTGCGCTGATCGACTATTTTCACGACATGTCATTACTGAAGGAAGGAGATGGTGTAAACTTCCAAAAG GCTAGTTGCACCCTTGACGGTTGTGTTAAAATCTACACCAGCCGAGTGGACAGTGTTGCAACAGAGACGGGGAAA CTTCTGAGTGGACTGGCTGATAGTCGCGACAAGAGAGGGCGCGGGGAGGAGGATGCAGAGGATGGCGATGAGGAT GAAGAAGGCGAGGATGGTCAGCCTCGCAGGTCGCGGAAAAAGACACGTTCCCATGAGGCTACCCTCGCGCCGTCA TTTTCGTCATTGCAACTAAAGAAGTTCGAGCTAGAGTTCGCCGTGGACCCTCTATTCAAAAAAGCATCGGCGGAC TTTGATGAAGGAGGCGCCAAAGGCTTACTTCTGAACCACCTTGCTATTGATAGCCATGGAAGAATTGTTTTCGAT AGCAGCGACGATGCTGTGGATGATAGTGCAAAAACCTCCGAAGATGACCGTCAAGAATCTACGGATCCTGACCAG CAGACCGATGACCAAGCAAAACCAAACCAGAAACCCGCAAGCGACACATTTGAGAATAACACGGAGATCGACCTT GCTACACTAGCAAGCCGATTTTTCCCAGATCTAGATCGCCTAGATGAACAAGATATTTGTCCATCGCTTAAAAAC CTCGACTTGGGTGACCCCAGCGGGTCGCTGGATCTCCCTCTCCTCAAAGCGCCAGAGGAATGGCGGCAAGACAAG ATGGACGAAGATGGACGAGCACATGATGACCCATCTGGTATCATGCTGGACGACGACAACGCTGTCGGGTTTGAT GACGATGATGCTACCCTAGCCGGATTTGATCTCAGCGGCGACACTGGGTTTGGTGACGGAGGAGAGGTATGGGCT CGGGAAGCCGCCTTGGAACCAATGTTGAATGTTCACCGGACCACCCACGATGGGGATAATGATGGTGAGGGTGAC GATGGCAATGAAGACGCATATGCCATCTCCATGTCTCATCAAACTAATAGTCACGACCACGAGAATATTCTTAGC TACTTTGACAACGCGCTACAGAAGAACTGGGCTGGCCCAGAGCACTGGAAGATTCGAAGAATCAAAGAACATGCC ACACCCGCTACGTCGGCGCCCAAGCAGCGCAAAGAAAAAGAGCCATTTGAGATTGATTTCGCTGCCCCTCTGGAT CCTGCTGTCGCGGAATTGATCTACACCCCGGCCAGCTCCAACTCCGCCGTTTCATTACCCAAGACGCAGTGGAAA ACAAAGGGTCGCAACCTTCTTCCCGATGACAAGCATTTCAACTCCCGTAACCTACTCACATTGTTCCTCAAGCCG AAGGCAAAGATGGGCTCAAAGAAGATTTTGGGCAAACGCCGCCGGCAGGATTTGACGGCTGGTAATGGAGATATG GACGAGGCATTCTGGGCAAATCGCAAGCCGGAAGAAAACGCCGGCGAGGAAGGTGCCGCAGGTGCCTATGATGCC AATTTCTTTGCTGATGACGATGGTCTTGCTTTCCCGAACGGCATGGATCTCGATGACGACGACAATCTACCATTC GCGGATGCCCGGGAGATGCTCTCTCCGCCAGCAGACGGGACTGCAGGCACATCGGCTGGAGAAGCAGGTGGAGCA ACTGGACTCAGCGCGCTTTTGAATATGGTTGGCGCCACGCCTGGCCGACCGGGAGCTGGTGGCTACGGATCGCAA TTGGTGACACAAGGCGGTCGTCGTGCACGACCAGACTACGTGGCGTATGCACGTGTGGCAAAGAAGGTTGACGTT CGGCGTCTTAAAACCGAGATGTGGAAGGGCATGGGTGAGCGCCTGGTTGATGCCGTAGACTTTGCCTCAGCTTCA CAGCCAGGAGCCGTGTCCAGTGATGCTCCGACCGAACCCGAGAGTGAATCGGATGCCCCTGTCCCGCCTACACCC AAGGGTGAAAGCCCAGAGCAGGTGGGTGGTCGGCTACGGTTCACGCAAATTATGAACTCCCTCAAGGAAGTCTAC CCGACTGAGACTCTACGCGATATCAGCACCTCATTCGGGTTTATTTGTCTTCTGCATCTTGCCAACGAACAGGGC CTCGTGCTGGAGAGTGATCTTAGCAAGATGGGCAATGATGCGGCTACCCTAGAGGAGATCTTCGTAAGTAGGGAT ACGCACGCTATCATCGAAGAGGGAGGAGGGATGTGA |
| Transcript | >Pro_DTO377G3_2|g304.t1 ATGCCGCGTGTCGCAAACAAGGTACATCGCCGCTCTAACGGCAACTCGACCCCGCACAAAAACACACCGGTCAAG ATACCCCTCAACGATGATGAGGGCGAGAAGGCAGCGCGTATGGAGGCTCGTCAAGCACTTCATGATCGCCAAATG AGTCAGATTAAAGCGGCAGTCAAGACGCCTATGCCACCCCGTCGGTACACCCTCGATCGTGAAGAGAGCGACAGT CCCGTAACTCCTCGAGCCTCACATCATCGCAGTCGCACCAGCGATGTCAATGGCCGTGCAGTGACACCGATGAAG CGCGTGCCTATCTTGGCTAATTTTGAAGAATGGATGAAGATGGCGACTGATAACAAAATCAATGCGAATAACTCC TGGAACTTTGCGCTGATCGACTATTTTCACGACATGTCATTACTGAAGGAAGGAGATGGTGTAAACTTCCAAAAG GCTAGTTGCACCCTTGACGGTTGTGTTAAAATCTACACCAGCCGAGTGGACAGTGTTGCAACAGAGACGGGGAAA CTTCTGAGTGGACTGGCTGATAGTCGCGACAAGAGAGGGCGCGGGGAGGAGGATGCAGAGGATGGCGATGAGGAT GAAGAAGGCGAGGATGGTCAGCCTCGCAGGTCGCGGAAAAAGACACGTTCCCATGAGGCTACCCTCGCGCCGTCA TTTTCGTCATTGCAACTAAAGAAGTTCGAGCTAGAGTTCGCCGTGGACCCTCTATTCAAAAAAGCATCGGCGGAC TTTGATGAAGGAGGCGCCAAAGGCTTACTTCTGAACCACCTTGCTATTGATAGCCATGGAAGAATTGTTTTCGAT AGCAGCGACGATGCTGTGGATGATAGTGCAAAAACCTCCGAAGATGACCGTCAAGAATCTACGGATCCTGACCAG CAGACCGATGACCAAGCAAAACCAAACCAGAAACCCGCAAGCGACACATTTGAGAATAACACGGAGATCGACCTT GCTACACTAGCAAGCCGATTTTTCCCAGATCTAGATCGCCTAGATGAACAAGATATTTGTCCATCGCTTAAAAAC CTCGACTTGGGTGACCCCAGCGGGTCGCTGGATCTCCCTCTCCTCAAAGCGCCAGAGGAATGGCGGCAAGACAAG ATGGACGAAGATGGACGAGCACATGATGACCCATCTGGTATCATGCTGGACGACGACAACGCTGTCGGGTTTGAT GACGATGATGCTACCCTAGCCGGATTTGATCTCAGCGGCGACACTGGGTTTGGTGACGGAGGAGAGGTATGGGCT CGGGAAGCCGCCTTGGAACCAATGTTGAATGTTCACCGGACCACCCACGATGGGGATAATGATGGTGAGGGTGAC GATGGCAATGAAGACGCATATGCCATCTCCATGTCTCATCAAACTAATAGTCACGACCACGAGAATATTCTTAGC TACTTTGACAACGCGCTACAGAAGAACTGGGCTGGCCCAGAGCACTGGAAGATTCGAAGAATCAAAGAACATGCC ACACCCGCTACGTCGGCGCCCAAGCAGCGCAAAGAAAAAGAGCCATTTGAGATTGATTTCGCTGCCCCTCTGGAT CCTGCTGTCGCGGAATTGATCTACACCCCGGCCAGCTCCAACTCCGCCGTTTCATTACCCAAGACGCAGTGGAAA ACAAAGGGTCGCAACCTTCTTCCCGATGACAAGCATTTCAACTCCCGTAACCTACTCACATTGTTCCTCAAGCCG AAGGCAAAGATGGGCTCAAAGAAGATTTTGGGCAAACGCCGCCGGCAGGATTTGACGGCTGGTAATGGAGATATG GACGAGGCATTCTGGGCAAATCGCAAGCCGGAAGAAAACGCCGGCGAGGAAGGTGCCGCAGGTGCCTATGATGCC AATTTCTTTGCTGATGACGATGGTCTTGCTTTCCCGAACGGCATGGATCTCGATGACGACGACAATCTACCATTC GCGGATGCCCGGGAGATGCTCTCTCCGCCAGCAGACGGGACTGCAGGCACATCGGCTGGAGAAGCAGGTGGAGCA ACTGGACTCAGCGCGCTTTTGAATATGGTTGGCGCCACGCCTGGCCGACCGGGAGCTGGTGGCTACGGATCGCAA TTGGTGACACAAGGCGGTCGTCGTGCACGACCAGACTACGTGGCGTATGCACGTGTGGCAAAGAAGGTTGACGTT CGGCGTCTTAAAACCGAGATGTGGAAGGGCATGGGTGAGCGCCTGGTTGATGCCGTAGACTTTGCCTCAGCTTCA CAGCCAGGAGCCGTGTCCAGTGATGCTCCGACCGAACCCGAGAGTGAATCGGATGCCCCTGTCCCGCCTACACCC AAGGGTGAAAGCCCAGAGCAGGTGGGTGGTCGGCTACGGTTCACGCAAATTATGAACTCCCTCAAGGAAGTCTAC CCGACTGAGACTCTACGCGATATCAGCACCTCATTCGGGTTTATTTGTCTTCTGCATCTTGCCAACGAACAGGGC CTCGTGCTGGAGAGTGATCTTAGCAAGATGGGCAATGATGCGGCTACCCTAGAGGAGATCTTCGTAAGTAGGGAT ACGCACGCTATCATCGAAGAGGGAGGAGGGATGTGA |
| Gene | >Pro_DTO377G3_2|g304.t1 ATGCCGCGTGTCGCAAACAAGGTACATCGCCGCTCTAACGGCAACTCGACCCCGCACAAAAACACACCGGTCAAG TACGGATCTGGATATCTCCTGGTTATCGCATTGAACTAATTATATCAGGATACCCCTCAACGATGATGAGGGCGA GAAGGCAGCGCGTATGGAGGCTCGTCAAGCACTTCATGATCGCCAAATGAGTCAGATTAAAGCGGCAGTCAAGAC GCCTATGCCACCCCGTCGGTACACCCTCGATCGTGAAGAGAGCGACAGTCCCGTAACTCCTCGAGCCTCACATCA TCGCAGTCGCACCAGCGATGTCAATGGCCGTGCAGTGACACCGATGAAGCGCGTGCCTATCTTGGCTAATTTTGA AGAATGGATGAAGATGGCGACTGATAACAAAATCAATGCGAATAACTCCTGGAACTTTGCGCTGATCGACTATTT TCACGACATGTCATTACTGAAGGAAGGAGATGGTGTAAACTTCCAAAAGGCTAGTTGCACCCTTGACGGTTGTGT TAAAATCTACACCAGCCGAGTGGACAGTGTTGCAACAGAGACGGGGAAACTTCTGAGTGGACTGGCTGATAGTCG CGACAAGAGAGGGCGCGGGGAGGAGGATGCAGAGGATGGCGATGAGGATGAAGAAGGCGAGGATGGTCAGCCTCG CAGGTCGCGGAAAAAGGTATGGTCTATACGGTGTCAGAGATTTGGGATTTTGACTAACTAGATGTGTCTAGACAC GTTCCCATGAGGCTACCCTCGCGCCGTCATTTTCGTCATTGCAACTAAAGAAGTTCGAGCTAGAGTTCGCCGTGG ACCCTCTATTCAAAAAAGCATCGGCGGACTTTGATGAAGGAGGCGCCAAAGGCTTACTTCTGAACCACCTTGCTA TTGATAGCCATGGAAGAATTGTTTTCGATAGCAGCGACGATGCTGTGGATGATAGTGCAAAAACCTCCGAAGATG ACCGTCAAGAATCTACGGATCCTGACCAGCAGACCGATGACCAAGCAAAACCAAACCAGAAACCCGCAAGCGACA CATTTGAGAATAACACGGAGATCGACCTTGCTACACTAGCAAGCCGATTTTTCCCAGATCTAGATCGCCTAGATG AACAAGATATTTGTCCATCGCTTAAAAACCTCGACTTGGGTGACCCCAGCGGGTCGCTGGATCTCCCTCTCCTCA AAGCGCCAGAGGAATGGCGGCAAGACAAGATGGACGAAGATGGACGAGCACATGATGACCCATCTGGTATCATGC TGGACGACGACAACGCTGTCGGGTTTGATGACGATGATGCTACCCTAGCCGGATTTGATCTCAGCGGCGACACTG GGTTTGGTGACGGAGGAGAGGTATGGGCTCGGGAAGCCGCCTTGGAACCAATGTTGAATGTTCACCGGACCACCC ACGATGGGGATAATGATGGTGAGGGTGACGATGGCAATGAAGACGCATATGCCATCTCCATGTCTCATCAAACTA ATAGTCACGACCACGAGAATATTCTTAGCTACTTTGACAACGCGCTACAGAAGAACTGGGCTGGCCCAGAGCACT GGAAGATTCGAAGAATCAAAGAACATGCCACACCCGCTACGTCGGCGCCCAAGCAGCGCAAAGAAAAAGAGCCAT TTGAGATTGATTTCGCTGCCCCTCTGGATCCTGCTGTCGCGGAATTGATCTACACCCCGGCCAGCTCCAACTCCG CCGTTTCATTACCCAAGACGCAGTGGAAAACAAAGGGTCGCAACCTTCTTCCCGATGACAAGCATTTCAACTCCC GTAACCTACTCACATTGTTCCTCAAGCCGAAGGCAAAGATGGGCTCAAAGAAGATTTTGGGCAAACGCCGCCGGC AGGATTTGACGGCTGGTAATGGAGATATGGACGAGGCATTCTGGGCAAATCGCAAGCCGGAAGAAAACGCCGGCG AGGAAGGTGCCGCAGGTGCCTATGATGCCAATTTCTTTGCTGATGACGATGGTCTTGCTTTCCCGAACGGCATGG ATCTCGATGACGACGACAATCTACCATTCGCGGATGCCCGGGAGATGCTCTCTCCGCCAGCAGACGGGACTGCAG GCACATCGGCTGGAGAAGCAGGTGGAGCAACTGGACTCAGCGCGCTTTTGAATATGGTTGGCGCCACGCCTGGCC GACCGGGAGCTGGTGGCTACGGATCGCAATTGGTGACACAAGGCGGTCGTCGTGCACGACCAGACTACGTGGCGT ATGCACGTGTGGCAAAGAAGGTTGACGTTCGGCGTCTTAAAACCGAGATGTGGAAGGGCATGGGTGAGCGCCTGG TTGATGCCGTAGACTTTGCCTCAGCTTCACAGCCAGGAGCCGTGTCCAGTGATGCTCCGACCGAACCCGAGAGTG AATCGGATGCCCCTGTCCCGCCTACACCCAAGGGTGAAAGCCCAGAGCAGGTGGGTGGTCGGCTACGGTTCACGC AAATTATGAACTCCCTCAAGGAAGTCTACCCGACTGAGACTCTACGCGATATCAGCACCTCATTCGGGTTTATTT GTCTTCTGCATCTTGCCAACGAACAGGGCCTCGTGCTGGAGAGTGATCTTAGCAAGATGGGCAATGATGCGGCTA CCCTAGAGGAGATCTTCGTAAGTAGGGATACGCACGCTATCATCGAAGAGGGAGGAGGGATGTGA |